View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5130-Insertion-10 (Length: 500)

Name: NF5130-Insertion-10
Description: NF5130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5130-Insertion-10
NF5130-Insertion-10
[»] chr6 (10 HSPs)
chr6 (8-497)||(7841093-7841582)
chr6 (8-319)||(7845197-7845508)
chr6 (8-319)||(7839215-7839526)
chr6 (399-497)||(7837757-7837854)
chr6 (374-487)||(7840944-7841057)
chr6 (372-486)||(7837608-7837720)
chr6 (411-486)||(28606565-28606640)
chr6 (367-425)||(7846974-7847032)
chr6 (418-487)||(15057108-15057177)
chr6 (427-486)||(28606452-28606509)
[»] chr8 (5 HSPs)
chr8 (8-266)||(3657039-3657297)
chr8 (418-493)||(3647472-3647547)
chr8 (374-489)||(3647326-3647434)
chr8 (421-486)||(43417520-43417585)
chr8 (449-485)||(31470839-31470875)
[»] chr3 (7 HSPs)
chr3 (415-486)||(26960932-26961003)
chr3 (433-486)||(53299822-53299875)
chr3 (427-483)||(53299711-53299767)
chr3 (427-486)||(26960818-26960877)
chr3 (419-475)||(16205706-16205762)
chr3 (416-489)||(2323085-2323158)
chr3 (430-471)||(30675008-30675049)
[»] chr4 (6 HSPs)
chr4 (418-486)||(22435445-22435513)
chr4 (412-486)||(29821318-29821392)
chr4 (418-475)||(22435348-22435405)
chr4 (449-486)||(11392392-11392429)
chr4 (418-471)||(13837842-13837895)
chr4 (418-471)||(35297580-35297633)
[»] chr2 (5 HSPs)
chr2 (418-482)||(18182498-18182562)
chr2 (412-487)||(1355986-1356064)
chr2 (418-475)||(18182605-18182662)
chr2 (416-471)||(532166-532221)
chr2 (416-471)||(3094282-3094337)
[»] chr5 (3 HSPs)
chr5 (421-487)||(34394664-34394730)
chr5 (418-486)||(5998526-5998593)
chr5 (427-486)||(20986441-20986500)
[»] chr7 (11 HSPs)
chr7 (422-487)||(16648908-16648973)
chr7 (422-487)||(17623269-17623334)
chr7 (412-475)||(16648783-16648846)
chr7 (412-475)||(17623144-17623207)
chr7 (427-475)||(36451999-36452047)
chr7 (427-486)||(27385925-27385984)
chr7 (430-473)||(33491191-33491234)
chr7 (427-485)||(6980866-6980924)
chr7 (418-471)||(6980966-6981019)
chr7 (421-486)||(42494864-42494929)
chr7 (427-475)||(42494777-42494825)
[»] chr1 (2 HSPs)
chr1 (416-471)||(51404089-51404144)
chr1 (430-462)||(46972975-46973007)
[»] scaffold0020 (1 HSPs)
scaffold0020 (418-468)||(1634-1684)


Alignment Details
Target: chr6 (Bit Score: 400; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 8 - 497
Target Start/End: Complemental strand, 7841582 - 7841093
Alignment:
Q  8 aaagattcttgcaagagggatttgttttcctagtagatggaggtgacctattaaaggtaatgcatataatggttctggtggtttcatacccttgaatttg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7841582 aaagattcttgcaagagggatttgttttcctagtagatggaggtgacctattaaaggtaatgcaaataatggttctggtggtttcatacccttgaatttg 7841483  T
Q  108 ttactaggttttttgatcttccatatgttgtatagaagcactaaaagtatagctagtactatatttattggctgtgaaaggaaaatatccatttttgagg 207  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7841482 ttactaggttttttgatcttccatatgttgtatataagcactaaaagtatagctagtactatatttattggctgtgaaaggaaaatatccatttttgagg 7841383  T
Q  208 aagtatagatgtttcgcatgatttttgacaagagagctatcatggtgttcttatagtgggtaatttgaaaaattaatgcattgaaatggagtgcaagaca 307  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7841382 gagtatagatgtttcgcatgatttttgacaagagagctatcatggtgttcttatagtgggtaatttgaaaaattaatgcattgaaatggagtgcaagaca 7841283  T
Q  308 tgtgaataatagtggttaacttgaaccaaatgactaacatannnnnnnnnnnnnnnnnnggtaaagacaatttgtgtatcgaaaatgctgcaccacacat 407  Q
    ||||||||||||||||||| |||||||||||||||| ||||                  | |||||||||||||||||  ||||||||||||||||||||    
T  7841282 tgtgaataatagtggttaatttgaaccaaatgactagcatattttgtttttctttttttgataaagacaatttgtgtagggaaaatgctgcaccacacat 7841183  T
Q  408 atgtggaaaacacttgggcgacattggggtgtcaatgttatgtgacatttgccaaccacaatgtcacatgtgtacaaaataaaaatcatg 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7841182 atgtggaaaacacttgggcgacattggggtgtcaatgttatgtgacatttgtcaaccacaatgtcacatgtgtacaaaataaaaatcatg 7841093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 7845508 - 7845197
Alignment:
Q  8 aaagattcttgcaagagggatttgttttcctagtagatggaggtgacctattaaaggtaatgcatataatggttctggtggtttcatacccttgaatttg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7845508 aaagattcttgcaagagggatttgttttcctagtagatggaggtgacctattaaaggtaatgcatataatggttctggtggtttcatacccttgaatttg 7845409  T
Q  108 ttactaggttttttgatcttccatatgttgtatagaagcactaaaagtatagctagtactatatttattggctgtgaaaggaaaatatccatttttgagg 207  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  7845408 ttactaggttttttgatcttccatatgttgtatataagcactaaaagtatagctagtactgtatttattggttgtgaaaggaaaatatccatttttgagg 7845309  T
Q  208 aagtatagatgtttcgcatgatttttgacaagagagctatcatggtgttcttatagtgggtaatttgaaaaattaatgcattgaaatggagtgcaagaca 307  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7845308 gagtatagatgtttcgcatgatttttgacaagagagctatcatggtgttcttatagtggttaatttgaaaaattaatgcattgaaatggagtgcaagaca 7845209  T
Q  308 tgtgaataatag 319  Q
    ||||||||||||    
T  7845208 tgtgaataatag 7845197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 7839526 - 7839215
Alignment:
Q  8 aaagattcttgcaagagggatttgttttcctagtagatggaggtgacctattaaaggtaatgcatataatggttctggtggtttcatacccttgaatttg 107  Q
    |||| |||||||||||| ||||| |||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  7839526 aaagtttcttgcaagagagatttattttcctagtagatggagctgacctattaatggtaatgcaaataatggttctggtggtttcatacccttgaatttg 7839427  T
Q  108 ttactaggttttttgatcttccatatgttgtatagaagcactaaaagtatagctagtactatatttattggctgtgaaaggaaaatatccatttttgagg 207  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||| || |||||||||||||||||||||||||    
T  7839426 ttactaggttttttgatcttccatatgttgtatagaagtactaaaagtattgctagtactgtatttattggttgcgaaaggaaaatatccatttttgagg 7839327  T
Q  208 aagtatagatgtttcgcatgatttttgacaagagagctatcatggtgttcttatagtgggtaatttgaaaaattaatgcattgaaatggagtgcaagaca 307  Q
     ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7839326 gagtatagatgtttcgcatgatttttgataagagagctatcatggtgttcttatagtggttaatttgaaaaattaatgcattgaaatggagtgcaagaca 7839227  T
Q  308 tgtgaataatag 319  Q
    ||||||||||||    
T  7839226 tgtgaataatag 7839215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 399 - 497
Target Start/End: Complemental strand, 7837854 - 7837757
Alignment:
Q  399 accacacatatgtggaaaacacttgggcgacattggggtgtcaatgttatgtgacatttgccaaccacaatgtcacatgtgtacaaaataaaaatcatg 497  Q
    ||||||| ||| ||||||| |||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||    
T  7837854 accacacctatatggaaaaaacttgg-cgacattggggtgtcaatgttatgtggcatttgccaactacaatatcacacgtgtacaaaataaaaatcatg 7837757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 374 - 487
Target Start/End: Original strand, 7840944 - 7841057
Alignment:
Q  374 acaatttgtgtatcgaaaatgctgcaccacacatatgtggaaaacacttgggcgacattggggtgtcaatgttatgtgacatttgccaaccacaatgtca 473  Q
    ||||||||||||  ||||||||||||| |||||||||||||||||| ||||| ||||||| |||| |||||| |||||| ||| |||||  ||||||| |    
T  7840944 acaatttgtgtactgaaaatgctgcactacacatatgtggaaaacatttgggtgacattgaggtgccaatgtcatgtgatattggccaattacaatgtta 7841043  T
Q  474 catgtgtacaaaat 487  Q
    || ||||| |||||    
T  7841044 caagtgtataaaat 7841057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 372 - 486
Target Start/End: Original strand, 7837608 - 7837720
Alignment:
Q  372 agacaatttgtgtatcgaaaatgctgcaccacacatatgtggaaaacacttgggcgacattggggtgtcaatgttatgtgacatttgccaaccacaatgt 471  Q
    ||||||||||||||  ||||||| |||||||||  ||||||||||||||||||| |||||||  ||| |||||| |||||| ||| |||||| |||||||    
T  7837608 agacaatttgtgtacggaaaatgttgcaccaca--tatgtggaaaacacttgggtgacattgaagtgccaatgtcatgtgatattggccaactacaatgt 7837705  T
Q  472 cacatgtgtacaaaa 486  Q
     ||| ||||||||||    
T  7837706 tacaagtgtacaaaa 7837720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 411 - 486
Target Start/End: Complemental strand, 28606640 - 28606565
Alignment:
Q  411 tggaaaacacttgggcgacattggggtgtcaatgttatgtgacatttgccaaccacaatgtcacatgtgtacaaaa 486  Q
    ||||||||||||||| |||||||||||| |||||| |||||||||| |||||||||||||||  | ||||||||||    
T  28606640 tggaaaacacttgggtgacattggggtgccaatgtcatgtgacattggccaaccacaatgtcttaagtgtacaaaa 28606565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 367 - 425
Target Start/End: Original strand, 7846974 - 7847032
Alignment:
Q  367 ggtaaagacaatttgtgtatcgaaaatgctgcaccacacatatgtggaaaacacttggg 425  Q
    |||||||||||||||||||  || |||||||||||||||||||||||||| ||||||||    
T  7846974 ggtaaagacaatttgtgtacggagaatgctgcaccacacatatgtggaaagcacttggg 7847032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 418 - 487
Target Start/End: Complemental strand, 15057177 - 15057108
Alignment:
Q  418 cacttgggcgacattggggtgtcaatgttatgtgacatttgccaaccacaatgtcacatgtgtacaaaat 487  Q
    ||||| || ||||||||||||||||||| |||||||||| |||||||| ||| ||||| |||||||||||    
T  15057177 cactttggtgacattggggtgtcaatgtcatgtgacattggccaaccaaaatatcacaagtgtacaaaat 15057108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 486
Target Start/End: Original strand, 28606452 - 28606509
Alignment:
Q  427 gacattggggtgtcaatgttatgtgacatttgccaaccacaatgtcacatgtgtacaaaa 486  Q
    |||||||||||| ||||||||||||||  | |||||||||||||||||| ||||||||||    
T  28606452 gacattggggtgccaatgttatgtgac--tggccaaccacaatgtcacaagtgtacaaaa 28606509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 155; Significance: 4e-82; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 8 - 266
Target Start/End: Complemental strand, 3657297 - 3657039
Alignment:
Q  8 aaagattcttgcaagagggatttgttttcctagtagatggaggtgacctattaaaggtaatgcatataatggttctggtggtttcatacccttgaatttg 107  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  3657297 aaagattcttgcaagagggatttggtttcctagtagatggaggtgacctattaaaggtaaggcatatgatggttctggtggtttcatacccttgaatttg 3657198  T
Q  108 ttactaggttttttgatcttccatatgttgtatagaagcactaaaagtatagctagtactatatttattggctgtgaaaggaaaatatccatttttgagg 207  Q
    |||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||| ||  ||| |||| |  |||| |||||||||||| ||    
T  3657197 ttactaggtttttttaccctccatatgttgtatagaagcactaaaagtatagctagtactatagttgctggttgtgtatagaaattatccatttttgtgg 3657098  T
Q  208 aagtatagatgtttcgcatgatttttgacaagagagctatcatggtgttcttatagtgg 266  Q
     |||| |||||| |  |||||||||||| |||| | ||||||| || ||||| ||||||    
T  3657097 gagtaaagatgtgttacatgatttttgagaagataactatcattgttttcttttagtgg 3657039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 418 - 493
Target Start/End: Complemental strand, 3647547 - 3647472
Alignment:
Q  418 cacttgggcgacattggggtgtcaatgttatgtgacatttgccaaccacaatgtcacatgtgtacaaaataaaaat 493  Q
    |||||||| |||||||||||| |||||| |||||||||| ||||||||||||| |||| |||||||||||||||||    
T  3647547 cacttgggtgacattggggtgccaatgtcatgtgacattggccaaccacaatgacacaagtgtacaaaataaaaat 3647472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 374 - 489
Target Start/End: Original strand, 3647326 - 3647434
Alignment:
Q  374 acaatttgtgtatcgaaaatgctgcaccacacatatgtggaaaacacttgggcgacattggggtgtcaatgttatgtgacatttgccaaccacaatgtca 473  Q
    |||| |||||||  |||||||||||| ||||||||||||||||||||||||| |||||||       | ||| |||||| ||| | |||| |||||||||    
T  3647326 acaaattgtgtacggaaaatgctgcagcacacatatgtggaaaacacttgggtgacattg-------agtgtcatgtgatattgggcaactacaatgtca 3647418  T
Q  474 catgtgtacaaaataa 489  Q
    || |||||||||||||    
T  3647419 caagtgtacaaaataa 3647434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 421 - 486
Target Start/End: Original strand, 43417520 - 43417585
Alignment:
Q  421 ttgggcgacattggggtgtcaatgttatgtgacatttgccaaccacaatgtcacatgtgtacaaaa 486  Q
    ||||| |||||||| |||||||||| |||||| ||| || |||||||||||| || ||||||||||    
T  43417520 ttgggtgacattggagtgtcaatgtcatgtgatattggctaaccacaatgtcgcaggtgtacaaaa 43417585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 485
Target Start/End: Complemental strand, 31470875 - 31470839
Alignment:
Q  449 gtgacatttgccaaccacaatgtcacatgtgtacaaa 485  Q
    |||||||| |||||||||||||||||| |||||||||    
T  31470875 gtgacattggccaaccacaatgtcacaagtgtacaaa 31470839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 415 - 486
Target Start/End: Complemental strand, 26961003 - 26960932
Alignment:
Q  415 aaacacttgggcgacattggggtgtcaatgttatgtgacatttgccaaccacaatgtcacatgtgtacaaaa 486  Q
    ||||||||||| ||||||| ||||||||||| |||||||||| |||||||||||||||||| ||||| ||||    
T  26961003 aaacacttgggtgacattgaggtgtcaatgtcatgtgacattggccaaccacaatgtcacaagtgtagaaaa 26960932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 433 - 486
Target Start/End: Complemental strand, 53299875 - 53299822
Alignment:
Q  433 ggggtgtcaatgttatgtgacatttgccaaccacaatgtcacatgtgtacaaaa 486  Q
    ||||||||||||| | |||||||| |||||||||||||||||| ||||||||||    
T  53299875 ggggtgtcaatgtcacgtgacattggccaaccacaatgtcacaagtgtacaaaa 53299822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 483
Target Start/End: Original strand, 53299711 - 53299767
Alignment:
Q  427 gacattggggtgtcaatgttatgtgacatttgccaaccacaatgtcacatgtgtaca 483  Q
    ||||||||||||||||||| |  ||||||| |||||||||||||||||| |||||||    
T  53299711 gacattggggtgtcaatgtcacatgacattggccaaccacaatgtcacaggtgtaca 53299767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 427 - 486
Target Start/End: Original strand, 26960818 - 26960877
Alignment:
Q  427 gacattggggtgtcaatgttatgtgacatttgccaaccacaatgtcacatgtgtacaaaa 486  Q
    |||||||||||  |||| | |||||||||| |||||||||||||||||| ||||||||||    
T  26960818 gacattggggtaccaatatcatgtgacattagccaaccacaatgtcacaagtgtacaaaa 26960877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 419 - 475
Target Start/End: Original strand, 16205706 - 16205762
Alignment:
Q  419 acttgggcgacattggggtgtcaatgttatgtgacatttgccaaccacaatgtcaca 475  Q
    ||||||| |||||||||||| |||||| ||||||||||   ||||||||||||||||    
T  16205706 acttgggtgacattggggtgccaatgtcatgtgacattgatcaaccacaatgtcaca 16205762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 489
Target Start/End: Original strand, 2323085 - 2323158
Alignment:
Q  416 aacacttgggcgacattggggtgtcaatgttatgtgacatttgccaaccacaatgtcacatgtgtacaaaataa 489  Q
    |||| ||||| |||||| |  ||||| |||||||||| ||| | |||| ||||||||||| |||||||||||||    
T  2323085 aacatttgggtgacattagaatgtcattgttatgtgatattagtcaactacaatgtcacaagtgtacaaaataa 2323158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 471
Target Start/End: Complemental strand, 30675049 - 30675008
Alignment:
Q  430 attggggtgtcaatgttatgtgacatttgccaaccacaatgt 471  Q
    |||| ||||||||||| |||||||||| ||||||||||||||    
T  30675049 attgtggtgtcaatgtcatgtgacattagccaaccacaatgt 30675008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 418 - 486
Target Start/End: Complemental strand, 22435513 - 22435445
Alignment:
Q  418 cacttgggcgacattggggtgtcaatgttatgtgacatttgccaaccacaatgtcacatgtgtacaaaa 486  Q
    |||||||| |||||||||||| |||||||||| ||||||  ||||||||||||||||| ||||||||||    
T  22435513 cacttgggtgacattggggtgccaatgttatgcgacattgaccaaccacaatgtcacaagtgtacaaaa 22435445  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 412 - 486
Target Start/End: Original strand, 29821318 - 29821392
Alignment:
Q  412 ggaaaacacttgggcgacattggggtgtcaatgttatgtgacatttgccaaccacaatgtcacatgtgtacaaaa 486  Q
    |||||||||||||| |||| ||||||| |||||| ||| ||| || |||||||||||||||||| ||||||||||    
T  29821318 ggaaaacacttgggtgacaatggggtgccaatgtcatgggaccttggccaaccacaatgtcacaagtgtacaaaa 29821392  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 475
Target Start/End: Original strand, 22435348 - 22435405
Alignment:
Q  418 cacttgggcgacattggggtgtcaatgttatgtgacatttgccaaccacaatgtcaca 475  Q
    |||||||| || ||||||||| |||||| |||||||||| || |||||||||||||||    
T  22435348 cacttgggtgatattggggtgccaatgtcatgtgacattggcaaaccacaatgtcaca 22435405  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 486
Target Start/End: Complemental strand, 11392429 - 11392392
Alignment:
Q  449 gtgacatttgccaaccacaatgtcacatgtgtacaaaa 486  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  11392429 gtgacattggccaaccacaatgtcacaagtgtacaaaa 11392392  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Original strand, 13837842 - 13837895
Alignment:
Q  418 cacttgggcgacattggggtgtcaatgttatgtgacatttgccaaccacaatgt 471  Q
    |||||| | ||||||| |||| |||||| |||||||||| ||||||||||||||    
T  13837842 cacttgtgtgacattgtggtgccaatgtcatgtgacattggccaaccacaatgt 13837895  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 35297633 - 35297580
Alignment:
Q  418 cacttgggcgacattggggtgtcaatgttatgtgacatttgccaaccacaatgt 471  Q
    |||||||| || |||||||||||||||| |||||| ||| | ||||||||||||    
T  35297633 cacttgggtgatattggggtgtcaatgtcatgtgatattagtcaaccacaatgt 35297580  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 418 - 482
Target Start/End: Original strand, 18182498 - 18182562
Alignment:
Q  418 cacttgggcgacattggggtgtcaatgttatgtgacatttgccaaccacaatgtcacatgtgtac 482  Q
    |||||||| |||||||||||| |||||| |||||||||| |||||||||||||||||| ||||||    
T  18182498 cacttgggtgacattggggtgccaatgtcatgtgacattggccaaccacaatgtcacaagtgtac 18182562  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 412 - 487
Target Start/End: Complemental strand, 1356064 - 1355986
Alignment:
Q  412 ggaaaacacttgggcgacattggggtgtcaatgttatgtgac---atttgccaaccacaatgtcacatgtgtacaaaat 487  Q
    |||||||| ||||| ||||||||||||||||||| || ||||   ||| |||||||||||||||||| |||||||||||    
T  1356064 ggaaaacatttgggtgacattggggtgtcaatgtcatctgacgacattggccaaccacaatgtcacaagtgtacaaaat 1355986  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 418 - 475
Target Start/End: Complemental strand, 18182662 - 18182605
Alignment:
Q  418 cacttgggcgacattggggtgtcaatgttatgtgacatttgccaaccacaatgtcaca 475  Q
    |||||||| |||||||||||| |||||| |||||||||| || |||||||||||||||    
T  18182662 cacttgggtgacattggggtgccaatgtcatgtgacattggcaaaccacaatgtcaca 18182605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 471
Target Start/End: Original strand, 532166 - 532221
Alignment:
Q  416 aacacttgggcgacattggggtgtcaatgttatgtgacatttgccaaccacaatgt 471  Q
    |||||||||| ||||| | |||| |||||| |||||||||| ||||||||||||||    
T  532166 aacacttgggtgacatggtggtgccaatgtcatgtgacattggccaaccacaatgt 532221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 471
Target Start/End: Complemental strand, 3094337 - 3094282
Alignment:
Q  416 aacacttgggcgacattggggtgtcaatgttatgtgacatttgccaaccacaatgt 471  Q
    ||||||| |||||||||| ||||||||||| |||||||||| | |||| |||||||    
T  3094337 aacacttaggcgacattgtggtgtcaatgtcatgtgacattggtcaactacaatgt 3094282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 421 - 487
Target Start/End: Original strand, 34394664 - 34394730
Alignment:
Q  421 ttgggcgacattggggtgtcaatgttatgtgacatttgccaaccacaatgtcacatgtgtacaaaat 487  Q
    ||||| |||||||||||| |||||| |||||||||| | |||||||||||||||| |||||||||||    
T  34394664 ttgggtgacattggggtgccaatgtgatgtgacattggtcaaccacaatgtcacaagtgtacaaaat 34394730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 486
Target Start/End: Original strand, 5998526 - 5998593
Alignment:
Q  418 cacttgggcgacattggggtgtcaatgttatgtgacatttgccaaccacaatgtcacatgtgtacaaaa 486  Q
    ||||||||||| || ||||||||||||| |||||||||| | |||||||||||||| | ||||||||||    
T  5998526 cacttgggcgatat-ggggtgtcaatgtcatgtgacattggtcaaccacaatgtcagaagtgtacaaaa 5998593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 486
Target Start/End: Original strand, 20986441 - 20986500
Alignment:
Q  427 gacattggggtgtcaatgttatgtgacatttgccaaccacaatgtcacatgtgtacaaaa 486  Q
    |||||||| |||  |||||||||||||||| | |||||||||||||||| |||| |||||    
T  20986441 gacattggcgtgcaaatgttatgtgacattggtcaaccacaatgtcacaagtgtgcaaaa 20986500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 422 - 487
Target Start/End: Complemental strand, 16648973 - 16648908
Alignment:
Q  422 tgggcgacattggggtgtcaatgttatgtgacatttgccaaccacaatgtcacatgtgtacaaaat 487  Q
    |||| |||||||||||| |||||| |||||||||| || ||||||||| ||||| |||||||||||    
T  16648973 tgggtgacattggggtgccaatgtcatgtgacattggcaaaccacaatttcacaagtgtacaaaat 16648908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 422 - 487
Target Start/End: Complemental strand, 17623334 - 17623269
Alignment:
Q  422 tgggcgacattggggtgtcaatgttatgtgacatttgccaaccacaatgtcacatgtgtacaaaat 487  Q
    |||| |||||||||||| |||||| |||||||||| || ||||||||| ||||| |||||||||||    
T  17623334 tgggtgacattggggtgccaatgtcatgtgacattggcaaaccacaatatcacaagtgtacaaaat 17623269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 412 - 475
Target Start/End: Original strand, 16648783 - 16648846
Alignment:
Q  412 ggaaaacacttgggcgacattggggtgtcaatgttatgtgacatttgccaaccacaatgtcaca 475  Q
    |||||||||||||| ||||| ||| ||||||||| |||||||||| | |||||||||| |||||    
T  16648783 ggaaaacacttgggtgacatcgggatgtcaatgtcatgtgacattggtcaaccacaatatcaca 16648846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 412 - 475
Target Start/End: Original strand, 17623144 - 17623207
Alignment:
Q  412 ggaaaacacttgggcgacattggggtgtcaatgttatgtgacatttgccaaccacaatgtcaca 475  Q
    |||||||||||||| ||||| ||| ||||||||| |||||||||| | |||||||||| |||||    
T  17623144 ggaaaacacttgggtgacatcgggatgtcaatgtcatgtgacattggtcaaccacaatatcaca 17623207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 475
Target Start/End: Original strand, 36451999 - 36452047
Alignment:
Q  427 gacattggggtgtcaatgttatgtgacatttgccaaccacaatgtcaca 475  Q
    ||||||| ||||||||||| |||||||||||| ||||||||||| ||||    
T  36451999 gacattgaggtgtcaatgtcatgtgacatttgtcaaccacaatgccaca 36452047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 486
Target Start/End: Complemental strand, 27385984 - 27385925
Alignment:
Q  427 gacattggggtgtcaatgttatgtgacatttgccaaccacaatgtcacatgtgtacaaaa 486  Q
    ||||||| |||| |||||| ||||||| || |||||||||||||||||| |||| |||||    
T  27385984 gacattgaggtgccaatgtcatgtgacgttggccaaccacaatgtcacaagtgtgcaaaa 27385925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 473
Target Start/End: Original strand, 33491191 - 33491234
Alignment:
Q  430 attggggtgtcaatgttatgtgacatttgccaaccacaatgtca 473  Q
    ||||||||| |||||| |||||||||| ||||||||||||||||    
T  33491191 attggggtgccaatgtcatgtgacattggccaaccacaatgtca 33491234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 427 - 485
Target Start/End: Original strand, 6980866 - 6980924
Alignment:
Q  427 gacattggggtgtcaatgttatgtgacatttgccaaccacaatgtcacatgtgtacaaa 485  Q
    |||||||||||| |||||| |  || |||| |||||||||||||||||| |||||||||    
T  6980866 gacattggggtgccaatgtcacatgtcattggccaaccacaatgtcacaagtgtacaaa 6980924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 6981019 - 6980966
Alignment:
Q  418 cacttgggcgacattggggtgtcaatgttatgtgacatttgccaaccacaatgt 471  Q
    |||||||| || ||| ||||| |||||| |||||||||| ||||||||||||||    
T  6981019 cacttgggtgaaattagggtgccaatgtcatgtgacattggccaaccacaatgt 6980966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 486
Target Start/End: Complemental strand, 42494929 - 42494864
Alignment:
Q  421 ttgggcgacattggggtgtcaatgttatgtgacatttgccaaccacaatgtcacatgtgtacaaaa 486  Q
    ||||| ||||||| |||| |||||| |||||||||| | |||||||||||| ||| || |||||||    
T  42494929 ttgggtgacattgtggtgccaatgtcatgtgacattggtcaaccacaatgttacaagtatacaaaa 42494864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 475
Target Start/End: Original strand, 42494777 - 42494825
Alignment:
Q  427 gacattggggtgtcaatgttatgtgacatttgccaaccacaatgtcaca 475  Q
    ||||||||||| | ||||| |||||||||| || |||||||||||||||    
T  42494777 gacattggggtattaatgtcatgtgacattggcaaaccacaatgtcaca 42494825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 471
Target Start/End: Complemental strand, 51404144 - 51404089
Alignment:
Q  416 aacacttgggcgacattggggtgtcaatgttatgtgacatttgccaaccacaatgt 471  Q
    |||||||  ||||||||| |||||||||||||| ||||||||||||| || |||||    
T  51404144 aacacttatgcgacattgtggtgtcaatgttatatgacatttgccaatcataatgt 51404089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 462
Target Start/End: Complemental strand, 46973007 - 46972975
Alignment:
Q  430 attggggtgtcaatgttatgtgacatttgccaa 462  Q
    |||||||||||||||||| ||||||||||||||    
T  46973007 attggggtgtcaatgttacgtgacatttgccaa 46972975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 468
Target Start/End: Original strand, 1634 - 1684
Alignment:
Q  418 cacttgggcgacattggggtgtcaatgttatgtgacatttgccaaccacaa 468  Q
    ||||| |||||| ||||||||||||||| |||||||||| |||| ||||||    
T  1634 cactttggcgacgttggggtgtcaatgtcatgtgacattggccatccacaa 1684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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