View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5130-Insertion-11 (Length: 423)
Name: NF5130-Insertion-11
Description: NF5130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5130-Insertion-11 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 7 - 417
Target Start/End: Complemental strand, 12313804 - 12313382
Alignment:
| Q |
7 |
atgaagttcttcatcttcaatctttgttt-gtaggtaattgctttccaaaatgcctactcttcaaacttcacttcctcctgaactcgccaacaatgccat |
105 |
Q |
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| T |
12313804 |
atgaacttcttcatcttcaatctttgttttgtaggtaattgctttccaaaatgcctactcttcaaacttcacttcctcctgaactcgccaacaatgccat |
12313705 |
T |
|
| Q |
106 |
tagggtaaaatacaacaccctttttgttcaattcaatgaaagattttaact--tgttttaaatttgcaaattttgtagctgatttnnnnnnnnnntgann |
203 |
Q |
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| T |
12313704 |
tagggtaaaatacaacgccctttttgttcaattcaatgaaagattttaacttgtgtattaaatttgcaaattttgtagctgattt-aaaaaaaaatgatt |
12313606 |
T |
|
| Q |
204 |
nnnnncagctttaccgtgaatgcctacgaagagcgaaatatatcggtcatcgggtacttgattctttattannnnnnnnnnnnnnaatcaggtttagtag |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12313605 |
tttttcagctttaccgtgaatgcctacgaagagcgaaatatatcggtcatcgggtacttgattctttattatctctctctctctcaatcaggtttagtag |
12313506 |
T |
|
| Q |
304 |
gagcttgttgctgc----------taaattaaacacaaatttgactttttctttagttatctgtttgttttccatagtcaattcttttgaaatgaaattt |
393 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
12313505 |
gagcttgttgctgctagcatagtttaaattaaacacaaatttgactttttctttagttatctgtttgttttccatagtcaattctttcgaaatgaaattt |
12313406 |
T |
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| Q |
394 |
gagtttattggtggtgtaagctct |
417 |
Q |
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|||||||||||||||||||||||| |
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| T |
12313405 |
gagtttattggtggtgtaagctct |
12313382 |
T |
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