View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5130-Insertion-2 (Length: 887)

Name: NF5130-Insertion-2
Description: NF5130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5130-Insertion-2
NF5130-Insertion-2
[»] chr2 (3 HSPs)
chr2 (192-887)||(15868306-15869002)
chr2 (8-163)||(15868137-15868294)
chr2 (331-407)||(45197909-45197985)
[»] chr5 (1 HSPs)
chr5 (22-163)||(15162058-15162201)
[»] chr4 (4 HSPs)
chr4 (572-744)||(53075704-53075876)
chr4 (260-413)||(53075988-53076141)
chr4 (52-163)||(53076239-53076350)
chr4 (331-404)||(48437344-48437417)
[»] chr1 (4 HSPs)
chr1 (260-413)||(28626519-28626672)
chr1 (266-413)||(1461801-1461948)
chr1 (271-413)||(1497433-1497575)
chr1 (691-740)||(1462287-1462336)
[»] chr3 (2 HSPs)
chr3 (293-413)||(50275635-50275755)
chr3 (569-741)||(50275840-50276012)
[»] chr8 (1 HSPs)
chr8 (266-413)||(26789288-26789435)
[»] chr7 (1 HSPs)
chr7 (329-413)||(48663568-48663652)


Alignment Details
Target: chr2 (Bit Score: 649; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 649; E-Value: 0
Query Start/End: Original strand, 192 - 887
Target Start/End: Original strand, 15868306 - 15869002
Alignment:
Q  192 tggattcataattgaaatttgtattgaaaatattcatttcgctaacgtaagcttttctcgtacttctttgcagaaagttcctgagaaaacaaaggaaagt 291  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  15868306 tggattcataattgaaatttgtattgaaaatattcatttcgttaacataatcttttcttgtacttctttgcagaaagttcctgagaaaacaaaagaaagt 15868405  T
Q  292 gctggtgctccatggcaatttgttggtttgttgtcggtgtttgatcctcctaggcatgacagtgctgaaaccattagaagagctcttaatcttggtgtaa 391  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15868406 gctggtgctccatggcaatttgttggtttgttgtcagtgtttgatcctcctaggcatgacagtgctgaaaccattagaagagctcttaatcttggtgtaa 15868505  T
Q  392 atgttaagatgattacaggtaactaaacaaaggactacatttctgttaaaatgacttattaacatttctgcatcggccacatttgactgcgattttctgt 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  15868506 atgttaagatgattacaggtaactaaacaaaggactacatttctgttaaaatgacttattaacatttctgcatcggccacatttgactgggattttctgt 15868605  T
Q  492 aatataaaggatcgcaactgttactggcttaccgcgactgctatttaaaaaacattatcttgacttttatttttctttctaggtgatcaacttgcaatag 591  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15868606 aatataaaggatcgcaactgttactggcttgccgcgactgctatttaaaaaacattatcttgacttttatttttctttctaggtgatcaacttgcaatag 15868705  T
Q  592 ctaaggagactggtaggagacttggtatgggaaccaatatgtatccatcttctaccttgttgggtcaagataaagatgcaaatgttgctgcacttccagt 691  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15868706 ctaaggagactggtaggagacttggtatgggaaccaatatgtatccatcttctaccttgttgggtcaagataaagatgcaaatgttgctgcacttccagt 15868805  T
Q  692 tgaagagctgattgagaaggcagacggatttgccggagtttttccaggttcatattcttttagcaactaactattctgaaaaaatttcctttttgcttat 791  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15868806 tgaagagctgattgagaaggcagacggatttgccggagtttttccaggttcatattcttttagcaactaactattctgaaaaaatttcctttttgcttat 15868905  T
Q  792 cctaatgctcttcg-aaaggtgtagttcctatgaagcactgacacatacacgaaaaccagacaagacactttcactgccacatttattctaaagtgt 887  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15868906 cctaatgctcttcgaaaaggtgtagttcctatgaagcattgacacatacacgaaaaccagacaagacactttcactgacacatttattctaaagtgt 15869002  T

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Target: chr2; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 15868137 - 15868294
Alignment:
Q  8 atagttacttacttcattgatgctaatagtacttt--tatatgtgaaaacagatcatgaacttgtgtaaccttagggatgatgaaaagaagaaggttcat 105  Q
    |||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||  |||| ||||| ||||| |||||||||||||||||||||    
T  15868137 atagttacttacttaattgatgctaatagtactttaatatatgtgaaaacagatcatgaatctgtgcaacctcagggaagatgaaaagaagaaggttcat 15868236  T
Q  106 gctattattgaaaagttcgcagaaagagggctacgttcacttggtgttgctagacagg 163  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15868237 gctatcattgaaaagttcgcagaaagagggctacgttcacttggtgttgctagacagg 15868294  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 331 - 407
Target Start/End: Complemental strand, 45197985 - 45197909
Alignment:
Q  331 tttgatcctcctaggcatgacagtgctgaaaccattagaagagctcttaatcttggtgtaaatgttaagatgattac 407  Q
    ||||||||||| |||||||||||||| |||||||||||| | || || ||||| || ||||| ||||| ||||||||    
T  45197985 tttgatcctccaaggcatgacagtgcagaaaccattagacgggccctcaatctcggagtaaacgttaaaatgattac 45197909  T

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Target: chr5 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 22 - 163
Target Start/End: Complemental strand, 15162201 - 15162058
Alignment:
Q  22 cattgatgctaatagtacttttatat--gtgaaaacagatcatgaacttgtgtaaccttagggatgatgaaaagaagaaggttcatgctattattgaaaa 119  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| | |||  ||||||||||||||||||||||||||||||||||    
T  15162201 cattgatgctaatagtacttttatatatgtgaaaacagatcatgaacttgtgtaacctcacggaatatgaaaagaagaaggttcatgctattattgaaaa 15162102  T
Q  120 gttcgcagaaagagggctacgttcacttggtgttgctagacagg 163  Q
     || |||||||||| |||||||||||||| ||||||||||||||    
T  15162101 atttgcagaaagagagctacgttcacttgatgttgctagacagg 15162058  T

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Target: chr4 (Bit Score: 93; Significance: 8e-45; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 572 - 744
Target Start/End: Complemental strand, 53075876 - 53075704
Alignment:
Q  572 aggtgatcaacttgcaatagctaaggagactggtaggagacttggtatgggaaccaatatgtatccatcttctaccttgttgggtcaagataaagatgca 671  Q
    ||||||||||||||| ||||| |||||||||||  |||||||||| |||||||| ||||||||||||||| | |||||  | |||||||| ||||| |||    
T  53075876 aggtgatcaacttgccatagcaaaggagactggccggagacttgggatgggaactaatatgtatccatctgccaccttacttggtcaagacaaagacgca 53075777  T
Q  672 aatgttgctgcacttccagttgaagagctgattgagaaggcagacggatttgccggagtttttccaggttcat 744  Q
    ||| |||| |||||||||||||||||||||||||||||||| || || ||||| ||||| |||||||||||||    
T  53075776 aatattgccgcacttccagttgaagagctgattgagaaggctgatgggtttgctggagtatttccaggttcat 53075704  T

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Target: chr4; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 260 - 413
Target Start/End: Complemental strand, 53076141 - 53075988
Alignment:
Q  260 tgcagaaagttcctgagaaaacaaaggaaagtgctggtgctccatggcaatttgttggtttgttgtcggtgtttgatcctcctaggcatgacagtgctga 359  Q
    ||||| |||||||||||||||| || |||||  |||||||||| ||||| |||||||||||||||||  ||||||| || ||||||||||||||||||||    
T  53076141 tgcaggaagttcctgagaaaactaaagaaagccctggtgctccttggcagtttgttggtttgttgtcactgtttgacccacctaggcatgacagtgctga 53076042  T
Q  360 aaccattagaagagctcttaatcttggtgtaaatgttaagatgattacaggtaa 413  Q
    ||| ||| | ||||||||| |||||||||| ||||||||||||||||| |||||    
T  53076041 aactattcggagagctcttcatcttggtgtcaatgttaagatgattactggtaa 53075988  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 163
Target Start/End: Complemental strand, 53076350 - 53076239
Alignment:
Q  52 aaacagatcatgaacttgtgtaaccttagggatgatgaaaagaagaaggttcatgctattattgaaaagttcgcagaaagagggctacgttcacttggtg 151  Q
    |||||||||||| || ||||||| |||||||| |||  ||||| |||  | ||||| |||||||| ||||| ||||| |||||||| ||||| |||| ||    
T  53076350 aaacagatcatggacctgtgtaagcttagggaagatacaaagaggaacatccatgcaattattgacaagtttgcagagagagggcttcgttctcttgctg 53076251  T
Q  152 ttgctagacagg 163  Q
    ||||||||||||    
T  53076250 ttgctagacagg 53076239  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 331 - 404
Target Start/End: Complemental strand, 48437417 - 48437344
Alignment:
Q  331 tttgatcctcctaggcatgacagtgctgaaaccattagaagagctcttaatcttggtgtaaatgttaagatgat 404  Q
    ||||| ||||| |||||||| |||||||| |||||| || | |||||| | |||||||| ||||||||||||||    
T  48437417 tttgaccctccaaggcatgatagtgctgagaccattcgacgtgctcttgaccttggtgttaatgttaagatgat 48437344  T

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Target: chr1 (Bit Score: 82; Significance: 3e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 260 - 413
Target Start/End: Original strand, 28626519 - 28626672
Alignment:
Q  260 tgcagaaagttcctgagaaaacaaaggaaagtgctggtgctccatggcaatttgttggtttgttgtcggtgtttgatcctcctaggcatgacagtgctga 359  Q
    ||||| |||||||||||||||| || |||||  |||||||||| ||||| |||||||||||||||||  ||| ||| || ||||||||||||||||||||    
T  28626519 tgcaggaagttcctgagaaaactaaagaaagccctggtgctccttggcagtttgttggtttgttgtcactgtctgacccacctaggcatgacagtgctga 28626618  T
Q  360 aaccattagaagagctcttaatcttggtgtaaatgttaagatgattacaggtaa 413  Q
    ||| ||| | ||||||||| |||||||||| ||||||||||||||||| |||||    
T  28626619 aactattcggagagctcttcatcttggtgtcaatgttaagatgattactggtaa 28626672  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 266 - 413
Target Start/End: Original strand, 1461801 - 1461948
Alignment:
Q  266 aagttcctgagaaaacaaaggaaagtgctggtgctccatggcaatttgttggtttgttgtcggtgtttgatcctcctaggcatgacagtgctgaaaccat 365  Q
    |||| ||||||| |||||| || ||| ||||||| |||||||||||||||||||||||  |  |||||||||||||||| ||||| ||||||||||| ||    
T  1461801 aagtacctgagagaacaaaagatagtcctggtgcaccatggcaatttgttggtttgttaccattgtttgatcctcctagacatgatagtgctgaaacgat 1461900  T
Q  366 tagaagagctcttaatcttggtgtaaatgttaagatgattacaggtaa 413  Q
    ||||||||||||| | |||||||| ||||| ||||||||||| |||||    
T  1461901 tagaagagctcttgaacttggtgtgaatgtcaagatgattactggtaa 1461948  T

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Target: chr1; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 271 - 413
Target Start/End: Complemental strand, 1497575 - 1497433
Alignment:
Q  271 cctgagaaaacaaaggaaagtgctggtgctccatggcaatttgttggtttgttgtcggtgtttgatcctcctaggcatgacagtgctgaaaccattagaa 370  Q
    ||||||| |||||| || ||| ||||||  |||||||||||||| ||| || |  || ||||||||||||| |||||||| ||||||||||| |||||||    
T  1497575 cctgagagaacaaaagatagtcctggtggaccatggcaatttgtcggtctgctaccgttgtttgatcctccaaggcatgatagtgctgaaacaattagaa 1497476  T
Q  371 gagctcttaatcttggtgtaaatgttaagatgattacaggtaa 413  Q
    |||| ||||| |||||||| ||||||||||||||||| |||||    
T  1497475 gagcacttaaccttggtgtgaatgttaagatgattactggtaa 1497433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 691 - 740
Target Start/End: Original strand, 1462287 - 1462336
Alignment:
Q  691 ttgaagagctgattgagaaggcagacggatttgccggagtttttccaggt 740  Q
    |||| ||| ||||||||||||| ||||||||||||||||| |||||||||    
T  1462287 ttgacgagttgattgagaaggctgacggatttgccggagtatttccaggt 1462336  T

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Target: chr3 (Bit Score: 65; Significance: 4e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 293 - 413
Target Start/End: Original strand, 50275635 - 50275755
Alignment:
Q  293 ctggtgctccatggcaatttgttggtttgttgtcggtgtttgatcctcctaggcatgacagtgctgaaaccattagaagagctcttaatcttggtgtaaa 392  Q
    ||||||| |||||||||||||||||| ||||  |  | |||||||||||||||||||| |||||||||||||| | ||||||||| || |||||||| ||    
T  50275635 ctggtgcaccatggcaatttgttggtctgttacctctatttgatcctcctaggcatgatagtgctgaaaccatcacaagagctctgaaccttggtgtgaa 50275734  T
Q  393 tgttaagatgattacaggtaa 413  Q
    ||||||||||||||| |||||    
T  50275735 tgttaagatgattactggtaa 50275755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 569 - 741
Target Start/End: Original strand, 50275840 - 50276012
Alignment:
Q  569 tctaggtgatcaacttgcaatagctaaggagactggtaggagacttggtatgggaaccaatatgtatccatcttctaccttgttgggtcaagataaagat 668  Q
    |||||||||||| ||||| || || ||||| |||||  | || ||||| |||||||| || ||||||||||||||| | ||| | ||||||   || |||    
T  50275840 tctaggtgatcagcttgccattgccaaggaaactggccgaaggcttggaatgggaacgaacatgtatccatcttcttcattgctcggtcaaagcaaggat 50275939  T
Q  669 gcaaatgttgctgcacttccagttgaagagctgattgagaaggcagacggatttgccggagtttttccaggtt 741  Q
    ||   |||| | || ||||||||||| ||| ||||||||||||| || |||||||| ||||| ||||| ||||    
T  50275940 gctgctgtttcagctcttccagttgatgagttgattgagaaggctgatggatttgctggagtgtttcctggtt 50276012  T

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Target: chr8 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 266 - 413
Target Start/End: Original strand, 26789288 - 26789435
Alignment:
Q  266 aagttcctgagaaaacaaaggaaagtgctggtgctccatggcaatttgttggtttgttgtcggtgtttgatcctcctaggcatgacagtgctgaaaccat 365  Q
    |||| ||||||| |||||| ||  || ||||||| |||||||||||||||||||||||  |  | |||||||||||||||||||| ||||||||||| ||    
T  26789288 aagtacctgagagaacaaaagatggtcctggtgcaccatggcaatttgttggtttgttaccactatttgatcctcctaggcatgatagtgctgaaactat 26789387  T
Q  366 tagaagagctcttaatcttggtgtaaatgttaagatgattacaggtaa 413  Q
    || |||||||||  | |||||||| ||||| ||||||||||| |||||    
T  26789388 taaaagagctctcgaacttggtgtgaatgtcaagatgattactggtaa 26789435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 329 - 413
Target Start/End: Original strand, 48663568 - 48663652
Alignment:
Q  329 tgtttgatcctcctaggcatgacagtgctgaaaccattagaagagctcttaatcttggtgtaaatgttaagatgattacaggtaa 413  Q
    |||||||||| || || ||||| ||||| || |||||  ||||||| ||||| ||||||||   |||||||||||||||||||||    
T  48663568 tgtttgatccaccaagacatgatagtgccgagaccatccgaagagcacttaaccttggtgtttgtgttaagatgattacaggtaa 48663652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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