View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5130-Insertion-3 (Length: 885)

Name: NF5130-Insertion-3
Description: NF5130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5130-Insertion-3
NF5130-Insertion-3
[»] chr8 (1 HSPs)
chr8 (7-879)||(7455650-7456530)


Alignment Details
Target: chr8 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 7 - 879
Target Start/End: Complemental strand, 7456530 - 7455650
Alignment:
Q  7 agctttgagccttttagagtgtgccacgacatttggcgccaaatcgttgcaagtgtcaacttttggcctattaacctgagctttatgccgacgctaaagc 106  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||    
T  7456530 agctttgagccttttagagtgtgccacgacatttggcgctaaatcgttgcaagtatcatcttttggcctattaacctgagctttatgctgacgctaaagc 7456431  T
Q  107 caattttctagtggtaatttgtattatac---------gaagtnnnnnnn-ggtaccctctaagtgtgagatttgagtgtaaagtgtgaaaataaaaaat 196  Q
    |||||||||||||||||||||||||||||         |||||        ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7456430 caattttctagtggtaatttgtattatacatattatacgaagtaaaacaaaggtaccctctaagcgtgagatttgagtgtaaagtgtgaaaataaaaaat 7456331  T
Q  197 tctgattttcgtaaattatgatttgttatgatataatttggattaaatgcatcaaccctttttgatcaatttttggaccaaatacattaattttctttaa 296  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7456330 tatgattttcgtaaattatgatttgttatgatataatttggattaaatgcatcaaccctttttgatcagtttttggaccaaatacattaattttctttaa 7456231  T
Q  297 tcaatttttgttcatatttaaggcgaagtagtatttacaatacctactttt--------taataaataattgatgttacttacttcatgctcttggatca 388  Q
    ||| ||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||    
T  7456230 tcagtttttgttcatatttgaggcgaagtagtatttacaatacctacttttgagttttttaataaataattgatgttacttacttcatgctcttggatca 7456131  T
Q  389 tgtttaactctcgtccctccaggcgtctcttagaacttagaagatagttgtcattccttaaaaattttggcattggaaatggtctaactgggtatcatcc 488  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||     
T  7456130 tgtttaactctcgtccctccaggtgtctcttagaacttagaagatagttgtcattccttaaaaaatttggcattggaaatggtctaactggatatcgtca 7456031  T
Q  489 attannnnnnn-cttggtgtcccttctgtaaaaaatgtggaggggcaacatcttttaccactaaaatattgtctgaaatctcaaaaatatttagaagact 587  Q
     |||        ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7456030 tttattttttttcttggtgtcccttctgtaaaaaatgtggaggggtaacatcttttaccactaaaatattgtctgaaatctcaaaaatatttagaagact 7455931  T
Q  588 gtttaattttnnnnnnnnntgacagatgttaatcgttagttattagattaatatttcaccttttttcatgtttgaaatgagagaaagcaatacaaataat 687  Q
    ||||| ||||         |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||    
T  7455930 gttta-ttttttttaaaaatgaccgatgttaatcgttagttattagattaatatttcaccctttttcatgtttgaaatgagagaaagcaatgctaataat 7455832  T
Q  688 atgaaactgatatatattagcaaaaatggatatgtgcagaaag-aagaagaagcnnnnnnnnnnnnnnnnnnnctagatatgcaaaa-ccaaccaaaa-g 784  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||| ||                     |||||||||||||| |||||||||| |    
T  7455831 atgaaactgatatatattagcaaaaatggctatgtgcagaaagaaagaaaaa-----------------aaaactagatatgcaaaaaccaaccaaaaag 7455749  T
Q  785 ggagagcatgctcatcttcttcagattgc-aaaattcaaac-aatacatggttagt-aatacatgtctttgaaataatgag-agtggagaacattgttt 879  Q
    ||||||||||||||||||||||||||||| |||||| |||| ||||||||| |||| || ||||||||||||||||||||| |||||||||||||||||    
T  7455748 ggagagcatgctcatcttcttcagattgcaaaaatttaaacaaatacatggctagtaaaaacatgtctttgaaataatgagaagtggagaacattgttt 7455650  T

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