View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5130-Insertion-4 (Length: 862)
Name: NF5130-Insertion-4
Description: NF5130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5130-Insertion-4 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 606; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 11 - 862
Target Start/End: Complemental strand, 36722754 - 36721916
Alignment:
| Q |
11 |
cgtcgggctgaggttttgaaatttgttgagcctgaagttgttcaggttaattggcctacttcaagcagtatgagtagtactgttgaatctttgactgggc |
110 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36722754 |
cgtcgggctgaggttttgaaatttgttgaacctgaagttgttcaggttaattggcctacttcaagcagtatgagtagtactgttgaatctttgagtgggc |
36722655 |
T |
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| Q |
111 |
ctaggattgttcaggttgttggttcttcgtcttcttctgctgtttccagggttcctattgttg---------gtggtggagctgctcaagctgttggtgc |
201 |
Q |
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| T |
36722654 |
ctaggattgttcaggttgttggttcttcgtcttcttctgctgtttccagggttcctattgttgctggtgctggtggtggagctgctcaacctgttggtgc |
36722555 |
T |
|
| Q |
202 |
tgctggtgctcgtgctggcgaaaaatttcatagtggctgtgattcatctacatctgctgttgatgatgacgaaaattttgttattctcagttcttttact |
301 |
Q |
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||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
36722554 |
tgctgctgctcgtgctggcaaaaaatttcatagtggctgtgattcatctacatctgctgttgatgatgacgaaaattgtgttattctcagttcttctact |
36722455 |
T |
|
| Q |
302 |
gcttcagtgaagaagcctacggtccaggctcatgctccgacccaggctcatgttcatgctcccgctcaggttccggctcagattccggttcaggttcagg |
401 |
Q |
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| T |
36722454 |
gcttcagtgaggaagcctatggtccaggctc------cggcccaggctcatgttcatgctcccgctcaggttccggctcaggttcaggttccggcgcagg |
36722361 |
T |
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| Q |
402 |
ttccggctcaggctcaagttcaagctcgggtgtttgctattgatctgaatttacctccaccgatggatgatgaagaacctttgtttgactgactttgatt |
501 |
Q |
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| T |
36722360 |
ctcaggctcaggctcaagttcaagctctggtgtttgctattgatctgaatttgcctcctccgatggatgatgaataacctttatttgactgactttgatt |
36722261 |
T |
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| Q |
502 |
catcttgtatctttagttctcattcttccatccaatattactctcatccataataaaaatagtcaattcgagagaattatccataaaaattaaatatgtc |
601 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
36722260 |
catcttgtatctttagttctcattcttccatccaatattactctcatccataataaaaatagtcaattc--gagaatgatccataaaaattaaatatgtc |
36722163 |
T |
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| Q |
602 |
ctcaaggatcacattaatgggaaataacataatataacacaccaatatgttctctnnnnnnnnnnnnnccacaccaatatgcagtgggattaaaattcct |
701 |
Q |
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| T |
36722162 |
ctcaaggatcacattaatgggaaataacataatataacacaccaatatgttctct----aaaaaaaaaccacaccaatatgcagtgggattaaaattcct |
36722067 |
T |
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| Q |
702 |
ccaacttgcaaaaatctactgggagcagcaacaaatatatagcaacaatcgaaaacaaataaaacactaacgtggaaaaccccacaatgcaagggtaaag |
801 |
Q |
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| T |
36722066 |
ccaacttgcaaaaatctactgggagcagcaacaaatatatagcagcaatcgaaaacaaataaaacactaacgtggaaaaccccacaatgcaagggtaaaa |
36721967 |
T |
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| Q |
802 |
atcataggttgttcaaaccagagaaatagatttgata-gcacgagagtctcagtgtgatgcc |
862 |
Q |
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| T |
36721966 |
atcataggttgttc-----------atagatttgataggcacgagagtctcagtgtgatgcc |
36721916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 16 - 372
Target Start/End: Complemental strand, 36709880 - 36709512
Alignment:
| Q |
16 |
ggctgaggttttgaaatttgttgagcctgaagttgttcaggttaattggcctacttcaagcagtatgagtagtactgttgaatctttgactgggcctagg |
115 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||| | |||||||||| |
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| T |
36709880 |
ggctgaggttttgaaatttgttgagccagatgttgttcaggttaattggcctacttcaagcggtatgagtagtaccgttgagtctttcagtgggcctagg |
36709781 |
T |
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| Q |
116 |
attgttcaggttgttggttcttcgtcttcttctgctgtttccagggttcctattgttggtg------------gtggagctgctcaagctgttggtgctg |
203 |
Q |
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| T |
36709780 |
attgttcagcttgttggttcttcgtcttcttctgttgtttccagggttcctactgttggtggtggtgctggtggtggagttgctcaagctgttggtggtg |
36709681 |
T |
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| Q |
204 |
ctggtgctcgtgctggcgaaaaatttcatagtggctgtgattcatctacatctgctgttgatgatgacgaaaattttgttattctcagttcttttactgc |
303 |
Q |
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| T |
36709680 |
ctggtgctggtgctggtgaagattttcatagtggttgtgattcatcttcatctgttgttgatgatgacgaagattgtgttattctcagttcttctgccgc |
36709581 |
T |
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| Q |
304 |
ttcagtgaagaagcctacggtccaggctcatgctccgacccaggctcatgttcatgctcccgctcaggt |
372 |
Q |
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| T |
36709580 |
ttcagtgaggaagcctccggtccaggcccatgctctggcccaagctcaggttcatgctcaggctcaggt |
36709512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 671 - 768
Target Start/End: Complemental strand, 36730613 - 36730515
Alignment:
| Q |
671 |
cacaccaatatgcagtgggattaaaattcctcc-aacttgcaaaaatctactgggagcagcaacaaatatatagcaacaatcgaaaacaaataaaacac |
768 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| ||| ||| | |||| |||||||||||| ||| |||||||||||||||||||||| |
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| T |
36730613 |
cacaccaatatgcagtgggattaaaattcctccaaacttgcaagaatatacaagcagcaacaacaaatatatggcagcaatcgaaaacaaataaaacac |
36730515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 407 - 478
Target Start/End: Complemental strand, 36709537 - 36709466
Alignment:
| Q |
407 |
gctcaggctcaagttcaagctcgggtgtttgctattgatctgaatttacctccaccgatggatgatgaagaa |
478 |
Q |
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||||||| ||| | ||| |||| |||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
36709537 |
gctcaggttcatgctcaggctcaggtgtttgctattgatttgaatttacctccaccaatggatgatgaagaa |
36709466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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