View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5130-Insertion-5 (Length: 693)

Name: NF5130-Insertion-5
Description: NF5130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5130-Insertion-5
NF5130-Insertion-5
[»] chr5 (1 HSPs)
chr5 (16-693)||(10330441-10331117)


Alignment Details
Target: chr5 (Bit Score: 622; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 16 - 693
Target Start/End: Complemental strand, 10331117 - 10330441
Alignment:
Q  16 atatatatttccccacatattttttatggggaacaagatcaaattttagataactatcgtaatctatttggctatagatatcttttttgtttcctcgcgt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10331117 atatatatttccccacatattttttatggggaacaagatcaaattttagataactatcataatctatttggctatagatatcttttttgtttcctcgcgt 10331018  T
Q  116 gaaaaactcacaatatacagtacattaactatatagcaatctcatactcaaagaagaatccatgatagctagctaaagagggaaaatcaagaattgaaat 215  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10331017 gaaaaattcacaatatatagtacattaactatatagcaatctcatactcaaagaagaatccatgatagctagctaaagagggaaaatcaagaattgaaat 10330918  T
Q  216 tattttgcgcaataattctcatgtttgaattatattgtttttgaaggcatctaagaaaaatttagtgctaattagtgtgatacgagggatagatgctaag 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10330917 tattttgcgcaataattctcatgtttgaattatattgtttttgaaggcatctaagaaaaatttagggctaattagtgtgatacgagggatagatgctaag 10330818  T
Q  316 aaattctttaagtatcataaggtaagcagggacggtggacatggtataattttccaaattttgtgatatagtctaacaaaagatttgaatttggtgccga 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10330817 aaattctttaagtatcataaggtaagcagggacggtggacatggtataattttccaaattttgtgatatagtctaacaaaagatttgaatttggtgccga 10330718  T
Q  416 tggaattttgtgacataaatctcttaccaaacaacgaaatttttaaaggaatcaaatgtttttaagtgaccttatacaaaggggatatgctatttcttca 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  10330717 tggaattttgtgacataaatctcttaccaaacaacgaaatttttaaaggaatcaaatgttttcaagtgaccttatacaaagggaatatgctatttcttca 10330618  T
Q  516 aaatagatattaactcagtaagattcttcaaccgaatacattcaatcgagattattatctcatattcaagtgtgctctatattatcctgcaatgaaatgt 615  Q
    |||||||||||||||  ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |    
T  10330617 aaatagatattaact-tgtaagattcttcaactgaatacattcaatcgagattataatctcatattcaagtgtgctctacattatcctgcaatgaaatat 10330519  T
Q  616 tacacaataaaaccctacactccaccaattcaacctcacaaacaaacaaatttcttctccaaagctaacaagccccct 693  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10330518 tagacaataaaaccctacactccaccaattcaacctcacaaacaaacaaatttcttctccaaagctaacaagccccct 10330441  T

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