View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5130_high_6 (Length: 338)
Name: NF5130_high_6
Description: NF5130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5130_high_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 326
Target Start/End: Complemental strand, 35162026 - 35161723
Alignment:
| Q |
19 |
caatttttgcttctaatagtgacatgagggtgtaaagtgcaagaatcataaaaagtaaacgatctttgaacattaatcatgttatgagattgtatagtta |
118 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35162026 |
caatttttgcttctaatagtgacatggggatgtaaagtgcaagaatcataagaagtaaacgatctttgaacattagtcatgttatgagattgtatagtta |
35161927 |
T |
|
| Q |
119 |
tattgcaaatcggtctaagacacggtgtttcatgagatcatgcaagaggtacggttatgtggatgagggcaagtgga-nnnnnnnngtccaaataaaaaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35161926 |
tattgcaaatcggtctaagacacggtgtttcatgagatcatgcaaga-gtacggtcatgtggatgagggcaagtggatttttttttgtccaaataaaaaa |
35161828 |
T |
|
| Q |
218 |
gtgcatccttgcaaacttagaacttaatatttttagactggtctaaaatattataaggtctaagttagttagcagtgcaacgtttttgagtggtatcatt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
35161827 |
gtgcatccttgcaaacttagaacttaatatttttagactggtctaaaatattataaggtcta----agttagcagtgcaacatttttgagtggtatcatt |
35161732 |
T |
|
| Q |
318 |
tgtgatatt |
326 |
Q |
| |
|
||||||||| |
|
|
| T |
35161731 |
tgtgatatt |
35161723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University