View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5130_low_1 (Length: 646)

Name: NF5130_low_1
Description: NF5130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5130_low_1
NF5130_low_1
[»] chr5 (8 HSPs)
chr5 (46-308)||(38278986-38279248)
chr5 (118-191)||(38270557-38270629)
chr5 (114-159)||(38271828-38271873)
chr5 (116-152)||(38276955-38276991)
chr5 (114-191)||(38278042-38278120)
chr5 (121-186)||(38279481-38279547)
chr5 (338-419)||(38273944-38274025)
chr5 (552-588)||(38277336-38277372)
[»] chr8 (3 HSPs)
chr8 (93-198)||(26572729-26572831)
chr8 (340-406)||(26574026-26574092)
chr8 (341-423)||(26573813-26573895)
[»] chr3 (1 HSPs)
chr3 (342-371)||(35756369-35756398)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 4e-86; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 46 - 308
Target Start/End: Original strand, 38278986 - 38279248
Alignment:
Q  46 tttatcatgtatcttttattatttttagaatagaatacaccaacgtcatagggattcatataactgggacaaatgattttgatgattttttagacaaatt 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||         |||||||||||    
T  38278986 tttatcatgtatcttttattatttttagaatagaatacaccaacgtcatagggattcatataattgggacaaatgatttt---------ttagacaaatt 38279076  T
Q  146 ttatgacagaaagtaactacgaacatcatgttgggtttattaaagttctacattggaca----------taatactatgtttataatctaggtgaaatgt 235  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||   ||||||||          ||||||||||||||||||| |||||||||||    
T  38279077 ttatgaca-aaagtaactacgaacatcatgttgggtttattaaagttccgtattggacacaatacaacataatactatgtttataatcgaggtgaaatgt 38279175  T
Q  236 cttataagttagggtgaaagtggaggggactaaattgattgtctctaagatttctcaattttgatccagccaa 308  Q
    ||||||| ||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38279176 cttataaattatgatgaaagtggaggggattaaattgattgtctctaagatttctcaattttgatccagccaa 38279248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 118 - 191
Target Start/End: Original strand, 38270557 - 38270629
Alignment:
Q  118 atgattttgatgattttttagacaaattttatgacagaaagtaactacgaacatcatgttgggtttattaaagt 191  Q
    |||||||||||||| ||| |||||||||| |||||||||||| |||||  | |||||||||| |||| ||||||    
T  38270557 atgattttgatgatgtttgagacaaatttcatgacagaaagtgactac-tatatcatgttggatttagtaaagt 38270629  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 38271828 - 38271873
Alignment:
Q  114 acaaatgattttgatgattttttagacaaattttatgacagaaagt 159  Q
    |||||||||||||||||| ||| |||||||||| ||||||||||||    
T  38271828 acaaatgattttgatgatgtttgagacaaatttcatgacagaaagt 38271873  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 38276955 - 38276991
Alignment:
Q  116 aaatgattttgatgattttttagacaaattttatgac 152  Q
    |||||||||||||||||||||||| ||||||||||||    
T  38276955 aaatgattttgatgattttttagataaattttatgac 38276991  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 38278042 - 38278120
Alignment:
Q  114 acaaatgattttgatgattttttagacaaattttatgacagaaagtaactacga-acatcatgttgggtttattaaagt 191  Q
    |||||||||||||||||  ||| |||||||||| ||| | |||||||||||| | | |||||||| | |||||||||||    
T  38278042 acaaatgattttgatgacgtttgagacaaatttcatgtctgaaagtaactactatatatcatgttcgatttattaaagt 38278120  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 121 - 186
Target Start/End: Original strand, 38279481 - 38279547
Alignment:
Q  121 attttgatgattttttagacaaattttatgacagaaagtaactac-gaacatcatgttgggtttatt 186  Q
    ||||||||||| ||| |||||||||| |||||||||||||| ||| | | |||||||||| ||||||    
T  38279481 attttgatgatgtttgagacaaatttcatgacagaaagtaattactgcatatcatgttggttttatt 38279547  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 419
Target Start/End: Original strand, 38273944 - 38274025
Alignment:
Q  338 acgttttttggattataaaatccaaattgtgtttacacagtcttgatcaaattcaactcacatttcaaaccataaatcacta 419  Q
    ||||||||| ||||| ||| ||| || ||||||| ||||||  |||||||||| ||| |||||| ||||  |||||||||||    
T  38273944 acgtttttttgattaaaaagtccgaactgtgttttcacagttatgatcaaatttaacccacattccaaattataaatcacta 38274025  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 552 - 588
Target Start/End: Original strand, 38277336 - 38277372
Alignment:
Q  552 accacaataacaatggaagctaaagcaagaacaccaa 588  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  38277336 accacaacaacaacggaagctaaagcaagaacaccaa 38277372  T

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Target: chr8 (Bit Score: 68; Significance: 5e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 93 - 198
Target Start/End: Original strand, 26572729 - 26572831
Alignment:
Q  93 atagggattcatataactgggacaaatgattttgatgattttttagacaaattttatgacagaaagtaactacgaacatcatgttgggtttattaaagtt 192  Q
    |||||||||||||||| |||   |||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  26572729 atagggattcatataattgg---aaataattttgatgatttttgagacaaattttatgacagaaagtaactactaacatcatgttaggtttattaaagtt 26572825  T
Q  193 ctacat 198  Q
    | ||||    
T  26572826 ccacat 26572831  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 340 - 406
Target Start/End: Original strand, 26574026 - 26574092
Alignment:
Q  340 gttttttggattataaaatccaaattgtgtttacacagtcttgatcaaattcaactcacatttcaaa 406  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  26574026 gttttttggattataaaatccaaattgtgtttacatagtcttgatcaaactcaactcacatttcaaa 26574092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 423
Target Start/End: Original strand, 26573813 - 26573895
Alignment:
Q  341 ttttttggattataaaatccaaattgtgtttacacagtcttgatcaaattcaactcacatttcaaaccataaatcactaaaat 423  Q
    |||||| ||||||| ||| | || | |||||||||||| || || ||||||| |||||||||||||  |||||||||||||||    
T  26573813 ttttttagattatataattcgaactttgtttacacagttttaattaaattcagctcacatttcaaattataaatcactaaaat 26573895  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 371
Target Start/End: Original strand, 35756369 - 35756398
Alignment:
Q  342 tttttggattataaaatccaaattgtgttt 371  Q
    ||||||||||||||||||||||||||||||    
T  35756369 tttttggattataaaatccaaattgtgttt 35756398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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