View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5130_low_11 (Length: 266)
Name: NF5130_low_11
Description: NF5130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5130_low_11 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 30761924 - 30761656
Alignment:
| Q |
1 |
ctttttcctagtgagagaggagagagtcaattcaatatggtgcaaggcttaattttgaaggggttcaagacaatgaaaatatagtaaaataggtgtaaat |
100 |
Q |
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| T |
30761924 |
ctttttcctagtgagagaggagagagtcaattcaatatggtgcaaggcttaattttgagggggttcaagacaatgaaaatatagtaaaataggtgtaaat |
30761825 |
T |
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| Q |
101 |
atgaaaagttgagaaggtgcaattgaa-cccctggccacaacgtggctccgacaatgtgtctaatat-aaatcccgaca-nnnnnnngattaaaataggt |
197 |
Q |
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| T |
30761824 |
atgaaaagttgagaaggtgcaattgaaccccctggccacaacgtggctccgacaatgtgtctaatataaaatcccgacattttttttgattaaaataggt |
30761725 |
T |
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| Q |
198 |
tatcaatcatggtctctcgttggatgaaatgaaggaagcaatgagggtttttaaggaggtgtttgagaa |
266 |
Q |
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| T |
30761724 |
tatcaatcatggtctctcgttggatgaaatgaaggaagcaatgagtgtttttaaggaggtgtttgagaa |
30761656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 21139175 - 21139019
Alignment:
| Q |
1 |
ctttttcctagtgagagaggagagagtcaattcaatatggtgcaaggcttaattttgaaggggttcaagacaatgaaaatatagtaaaataggtgtaaat |
100 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||| |||| ||||||| |||||||||||| |
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| T |
21139175 |
ctttttcctagtgagagaggagagagtcgatgcaatatggtgcaaggcttaattttgagggggttcaagacaataaaaacatagtaagataggtgtaaat |
21139076 |
T |
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| Q |
101 |
atgaaaagttgagaaggtgcaattgaa-cccctggccacaacgtggctccgacaatg |
156 |
Q |
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| T |
21139075 |
ttgaatagttgagaaggtgcagttgaaccccctggccactacatggctccgccaatg |
21139019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 185 - 266
Target Start/End: Complemental strand, 30749528 - 30749447
Alignment:
| Q |
185 |
gattaaaataggttatcaatcatggtctctcgttggatgaaatgaaggaagcaatgagggtttttaaggaggtgtttgagaa |
266 |
Q |
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| T |
30749528 |
gattaaaataggttatcaatcatggtctctcgttggatgaaatgaaggaaacaatgagtattttcaaggaggtgtttgagaa |
30749447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 185 - 266
Target Start/End: Complemental strand, 30770979 - 30770898
Alignment:
| Q |
185 |
gattaaaataggttatcaatcatggtctctcgttggatgaaatgaaggaagcaatgagggtttttaaggaggtgtttgagaa |
266 |
Q |
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| T |
30770979 |
gattaaaataggttatcaatcatggtctctcgttggatgaaatgaaggaaacaatgagtattttcaaggaggtgtttgagaa |
30770898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 30784264 - 30784192
Alignment:
| Q |
193 |
taggttatcaatcatggtctctcgttggatgaaatgaaggaagcaatgagggtttttaaggaggtgtttgaga |
265 |
Q |
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| T |
30784264 |
taggttatcaatcatggaatctcaatgaatcaaatgaaagaaacaatgagtgttttcaaggaggtgtttgaga |
30784192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 30741846 - 30741802
Alignment:
| Q |
221 |
atgaaatgaaggaagcaatgagggtttttaaggaggtgtttgaga |
265 |
Q |
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| T |
30741846 |
atgaaatgaaggaaacaatgagtattttcaaggaggtgtttgaga |
30741802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 35 - 157
Target Start/End: Complemental strand, 28444633 - 28444511
Alignment:
| Q |
35 |
atatggtgcaaggcttaattttgaaggggttcaagacaatgaaaatatagtaaaataggtgtaaatatgaaaagttgagaaggtgcaattgaacccctgg |
134 |
Q |
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| T |
28444633 |
atatggtgcaaggttttattttgagggggttcaaaacactaaaaatatagtaaaataggtgtaaaattgaaaagttgagaaggtggagttgaacccctga |
28444534 |
T |
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| Q |
135 |
ccacaacgtggctccgacaatgt |
157 |
Q |
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| T |
28444533 |
ccactatgtggctccgccaatgt |
28444511 |
T |
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