View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5130_low_13 (Length: 250)

Name: NF5130_low_13
Description: NF5130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5130_low_13
NF5130_low_13
[»] chr8 (7 HSPs)
chr8 (9-163)||(44240408-44240562)
chr8 (9-143)||(193673-193807)
chr8 (9-143)||(721277-721411)
chr8 (9-143)||(882384-882518)
chr8 (9-143)||(30982886-30983020)
chr8 (9-143)||(34774105-34774239)
chr8 (9-143)||(30210870-30211004)
[»] chr5 (6 HSPs)
chr5 (9-163)||(27738206-27738360)
chr5 (9-163)||(33232743-33232897)
chr5 (12-163)||(7071675-7071826)
chr5 (9-143)||(29542097-29542231)
chr5 (9-143)||(42663663-42663797)
chr5 (31-143)||(3260613-3260725)
[»] chr4 (7 HSPs)
chr4 (9-163)||(56560794-56560948)
chr4 (9-163)||(52056636-52056790)
chr4 (9-143)||(24035877-24036011)
chr4 (9-143)||(24246833-24246967)
chr4 (79-143)||(49128014-49128078)
chr4 (79-143)||(51834045-51834109)
chr4 (90-143)||(39382695-39382748)
[»] chr1 (10 HSPs)
chr1 (9-163)||(46407774-46407928)
chr1 (9-163)||(35606616-35606770)
chr1 (9-143)||(51488151-51488285)
chr1 (9-143)||(5271282-5271416)
chr1 (9-143)||(7592981-7593115)
chr1 (9-143)||(50978602-50978736)
chr1 (38-143)||(38843632-38843737)
chr1 (65-139)||(27576188-27576262)
chr1 (69-143)||(27000067-27000141)
chr1 (97-143)||(15353534-15353580)
[»] chr2 (7 HSPs)
chr2 (9-163)||(13896285-13896439)
chr2 (9-163)||(14036902-14037056)
chr2 (9-143)||(14380393-14380527)
chr2 (9-143)||(31686596-31686730)
chr2 (9-143)||(31786936-31787070)
chr2 (38-143)||(40254825-40254930)
chr2 (70-142)||(2443209-2443280)
[»] chr6 (3 HSPs)
chr6 (9-163)||(21515346-21515500)
chr6 (9-143)||(30019506-30019640)
chr6 (65-143)||(31745993-31746072)
[»] chr3 (5 HSPs)
chr3 (9-143)||(51125046-51125180)
chr3 (9-143)||(52692828-52692962)
chr3 (9-143)||(38469469-38469603)
chr3 (41-143)||(1527826-1527928)
chr3 (89-143)||(47141026-47141080)
[»] chr7 (5 HSPs)
chr7 (38-143)||(31012272-31012377)
chr7 (41-143)||(25341253-25341355)
chr7 (65-143)||(41064825-41064903)
chr7 (102-163)||(12910305-12910366)
chr7 (105-149)||(12910268-12910312)


Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 44240408 - 44240562
Alignment:
Q  9 gagatgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 108  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44240408 gagatggatcgcgttcgaaacataatccgcaatgaaattattgagcacaggcaaaataattagtattgttctttaaattattatatcaatattttagtac 44240507  T
Q  109 tataatacactttaaattagttttgtaataatattagtactttgttgcaatttaa 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44240508 tataatacactttaaattagttttgtaataatattagtactttgttgcaatttaa 44240562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 193673 - 193807
Alignment:
Q  9 gagatgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 108  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  193673 gagatggatcgcgttcgaaacataatccgcaatgaaattattgagcacatgcaaaataattagtattgtactttaaattattatatcaatattttagtac 193772  T
Q  109 tataatacactttaaattagttttgtaataatatt 143  Q
    |||||||||| |||  |||||||||| ||||||||    
T  193773 tataatacacattatgttagttttgtgataatatt 193807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 721277 - 721411
Alignment:
Q  9 gagatgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 108  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  721277 gagatggatcgcgttcgaaacataatccgcaatgaaattattgagcacatgcaaaataattagtattgtactttaaattattatatcaatattttagtac 721376  T
Q  109 tataatacactttaaattagttttgtaataatatt 143  Q
    |||||||||| |||  |||||||||| ||||||||    
T  721377 tataatacacattatgttagttttgtgataatatt 721411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 882384 - 882518
Alignment:
Q  9 gagatgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 108  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  882384 gagatggatcgcgttcgaaacataatccgcaatgaaattattgagcacatgcaaaataattagtattgtactttaaattattatatcaatattttagtac 882483  T
Q  109 tataatacactttaaattagttttgtaataatatt 143  Q
    |||||||||| |||  |||||||||| ||||||||    
T  882484 tataatacacattatgttagttttgtgataatatt 882518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 30983020 - 30982886
Alignment:
Q  9 gagatgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 108  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30983020 gagatggatcgcgttcgaaacataatccgcaatgaaattattgagcacaggcaaaataattagtattgtactttaaattattatatcaatattttagtac 30982921  T
Q  109 tataatacactttaaattagttttgtaataatatt 143  Q
    |||||||||| |||  |||||||||||||||||||    
T  30982920 tataatacacattatgttagttttgtaataatatt 30982886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 34774239 - 34774105
Alignment:
Q  9 gagatgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 108  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34774239 gagatggatcgcgttcgaaacataatccgcaatgaaattattgagcacaggcaaaataattagtattgtactttaaattattatatcaatattttagtac 34774140  T
Q  109 tataatacactttaaattagttttgtaataatatt 143  Q
    |||||||||| |||  |||||||||||||||||||    
T  34774139 tataatacacattatgttagttttgtaataatatt 34774105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 30210870 - 30211004
Alignment:
Q  9 gagatgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 108  Q
    |||||| |||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30210870 gagatggatcgcgtttgaaacataatccgcaatgaaattattgagcacaggcaaaataattagtattgtactttaaattattatatcaatattttagtac 30210969  T
Q  109 tataatacactttaaattagttttgtaataatatt 143  Q
    |||||||||| |||  |||||||||||||||||||    
T  30210970 tataatacacattatgttagttttgtaataatatt 30211004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 9 - 163
Target Start/End: Complemental strand, 27738360 - 27738206
Alignment:
Q  9 gagatgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 108  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27738360 gagatggatcgcgttcgaaacataatccgcaatgaaattattgagcacaggcaaaataattagtattgttctttaaattattatatcaatattttagtac 27738261  T
Q  109 tataatacactttaaattagttttgtaataatattagtactttgttgcaatttaa 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27738260 tataatacactttaaattagttttgtaataatattagtactttgttgcaatttaa 27738206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 33232743 - 33232897
Alignment:
Q  9 gagatgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 108  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33232743 gagatggatcgcgttcgaaacataatccgcaatgaaattattgagcacaggcaaaataattagtattgttttttaaattattatatcaatattttagtac 33232842  T
Q  109 tataatacactttaaattagttttgtaataatattagtactttgttgcaatttaa 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33232843 tataatacactttaaattagttttgtaataatattagtactttgttgcaatttaa 33232897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 7071826 - 7071675
Alignment:
Q  12 atgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtactat 111  Q
    ||||||| |||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  7071826 atgaatcacgttcgaaacataatccggaatgaaattattgagcacaggcaaaataattagtattgttctttaaattattatatcaatattttagtaccat 7071727  T
Q  112 aatacactttaaattagttttgtaataatattagtactttgttgcaatttaa 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7071726 aatacactttaaattagttttgtaataatattagtactttgttgcaatttaa 7071675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 29542231 - 29542097
Alignment:
Q  9 gagatgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 108  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29542231 gagatggatcgcgttcgaaacataatccgcaatgaaattattgagcacaggcaaaataattagtattgtactttaaattattatatcaatattttagtac 29542132  T
Q  109 tataatacactttaaattagttttgtaataatatt 143  Q
    |||||||||| |||  |||||||||||||||||||    
T  29542131 tataatacacattatgttagttttgtaataatatt 29542097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 42663663 - 42663797
Alignment:
Q  9 gagatgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 108  Q
    |||||| | ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42663663 gagatggaccgcgttcgaaacataatccgcaatgaaattattgagcacaggcaaaataattagtattgtactttaaattattatatcaatattttagtac 42663762  T
Q  109 tataatacactttaaattagttttgtaataatatt 143  Q
    |||||||||| |||  |||||||||||||||||||    
T  42663763 tataatacacattatgttagttttgtaataatatt 42663797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 31 - 143
Target Start/End: Complemental strand, 3260725 - 3260613
Alignment:
Q  31 taatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtactataatacactttaaattagtt 130  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||  ||||||    
T  3260725 taatccgcaatgaaattattgagcacaggcaaaataattagtattgtactttaaattattatatcaatattttagtactataatacacattatgttagtt 3260626  T
Q  131 ttgtaataatatt 143  Q
    |||||||||||||    
T  3260625 ttgtaataatatt 3260613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 56560794 - 56560948
Alignment:
Q  9 gagatgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 108  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56560794 gagatggatcgcgttcgaaacataatccgcaatgaaattattgagcacaggcaaaataattagtattgttctttaaattattatatcaatattttagtac 56560893  T
Q  109 tataatacactttaaattagttttgtaataatattagtactttgttgcaatttaa 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56560894 tataatacactttaaattagttttgtaataatattagtactttgttgcaatttaa 56560948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 9 - 163
Target Start/End: Complemental strand, 52056790 - 52056636
Alignment:
Q  9 gagatgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 108  Q
    |||||| ||| ||||||||||||||||  |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  52056790 gagatggatcacgttcgaaacataatctgcaatcaaattattgagcacatgcaaaataattaatattgttctttaaattattatatcaatattttaatac 52056691  T
Q  109 tataatacactttaaattagttttgtaataatattagtactttgttgcaatttaa 163  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52056690 cataatacactttaaattagttttgtaataatattagtactttgttgcaatttaa 52056636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 24036011 - 24035877
Alignment:
Q  9 gagatgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 108  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24036011 gagatggatcgcgttcgaaacataatccgcaatgaaattattgagcacaggcaaaataattagtattgtactttaaattattatatcaatattttagtac 24035912  T
Q  109 tataatacactttaaattagttttgtaataatatt 143  Q
    |||||||||| |||  |||||||||||||||||||    
T  24035911 tataatacacattatgttagttttgtaataatatt 24035877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 24246833 - 24246967
Alignment:
Q  9 gagatgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 108  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24246833 gagatggatcgcgttcgaaacataatccgcaatgaaattattgagcacaggcaaaataattagtattgtactttaaattattatatcaatattttagtac 24246932  T
Q  109 tataatacactttaaattagttttgtaataatatt 143  Q
    |||||||||| |||  |||||||||||||||||||    
T  24246933 tataatacacattatgttagttttgtaataatatt 24246967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 143
Target Start/End: Original strand, 49128014 - 49128078
Alignment:
Q  79 ctttaaattattatatcaatattttagtactataatacactttaaattagttttgtaataatatt 143  Q
    |||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||    
T  49128014 ctttaaattattatatcaatattttagtactataatacacattatgttagttttgtaataatatt 49128078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 51834109 - 51834045
Alignment:
Q  79 ctttaaattattatatcaatattttagtactataatacactttaaattagttttgtaataatatt 143  Q
    ||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||| |||||    
T  51834109 ctttaaattattatatcaatattttagtattatgatacacattaaattagttttgtaattatatt 51834045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 39382748 - 39382695
Alignment:
Q  90 tatatcaatattttagtactataatacactttaaattagttttgtaataatatt 143  Q
    ||||||||||||||||||||||||||||| |||  |||||||||||||||||||    
T  39382748 tatatcaatattttagtactataatacacattatgttagttttgtaataatatt 39382695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 46407774 - 46407928
Alignment:
Q  9 gagatgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 108  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46407774 gagatggatcgcgttcgaaacataatccgcaatgaaattattgagcacaggcaaaataattagtattgttctttaaattattatatcaatattttagtac 46407873  T
Q  109 tataatacactttaaattagttttgtaataatattagtactttgttgcaatttaa 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46407874 tataatacactttaaattagttttgtaataatattagtactttgttgcaatttaa 46407928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 35606616 - 35606770
Alignment:
Q  9 gagatgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 108  Q
    |||||| ||| | |||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35606616 gagatggatcacattcgaaacataacccgcaatcaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 35606715  T
Q  109 tataatacactttaaattagttttgtaataatattagtactttgttgcaatttaa 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35606716 tataatacactttaaattagttttgtaataatattagtactttgttgcaatttaa 35606770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 51488285 - 51488151
Alignment:
Q  9 gagatgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 108  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  51488285 gagatggatcgcgttcgaaacataatccgcaatgaaattattgagcacatgcaaaataattagtattgtactttaaattattatatcaatattttagtac 51488186  T
Q  109 tataatacactttaaattagttttgtaataatatt 143  Q
    |||||||||| |||  |||||||||||||||||||    
T  51488185 tataatacacattatgttagttttgtaataatatt 51488151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 5271416 - 5271282
Alignment:
Q  9 gagatgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 108  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5271416 gagatggatcgcgttcgaaacataatccgcaatgaaattattgagcacaggcaaaataattagtattgtactttaaattattatatcaatattttagtac 5271317  T
Q  109 tataatacactttaaattagttttgtaataatatt 143  Q
    |||||||||| |||  |||||||||||||||||||    
T  5271316 tataatacacattatgttagttttgtaataatatt 5271282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 7593115 - 7592981
Alignment:
Q  9 gagatgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 108  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7593115 gagatggatcgcgttcgaaacataatccgcaatgaaattattgagcacaggcaaaataattagtattgtactttaaattattatatcaatattttagtac 7593016  T
Q  109 tataatacactttaaattagttttgtaataatatt 143  Q
    |||||||||| |||  |||||||||||||||||||    
T  7593015 tataatacacattatgttagttttgtaataatatt 7592981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 50978736 - 50978602
Alignment:
Q  9 gagatgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 108  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  50978736 gagatggatcgcgttcgaaacataatccgcaatgaaattattgagcacaggcaaaataattagtattgtactttaaattattatatcaatattttagtac 50978637  T
Q  109 tataatacactttaaattagttttgtaataatatt 143  Q
    |||||||||| |||  |||||||||||||||||||    
T  50978636 tataatacacattatgttagttttgtaataatatt 50978602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 38 - 143
Target Start/End: Original strand, 38843632 - 38843737
Alignment:
Q  38 caatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtactataatacactttaaattagttttgtaat 137  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||    
T  38843632 caatgaaattattgagcacaggcaaaataattagtattgtactttaaattattatatcaatattttagtactataatacacattatgttagttttgtaat 38843731  T
Q  138 aatatt 143  Q
    ||||||    
T  38843732 aatatt 38843737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 139
Target Start/End: Original strand, 27576188 - 27576262
Alignment:
Q  65 taattagtattgttctttaaattattatatcaatattttagtactataatacactttaaattagttttgtaataa 139  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  27576188 taattagtattgtactttaaattattatatcaatattttagtactatgatacacattaaattagttttgtaataa 27576262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 69 - 143
Target Start/End: Complemental strand, 27000141 - 27000067
Alignment:
Q  69 tagtattgttctttaaattattatatcaatattttagtactataatacactttaaattagttttgtaataatatt 143  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||    
T  27000141 tagtattgtactttaaattattatatcaatattttagtactataatacacattatgttagttttgtaataatatt 27000067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 15353534 - 15353580
Alignment:
Q  97 atattttagtactataatacactttaaattagttttgtaataatatt 143  Q
    |||||||||||||||||||||| |||  |||||||||||||||||||    
T  15353534 atattttagtactataatacacattatgttagttttgtaataatatt 15353580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 13896285 - 13896439
Alignment:
Q  9 gagatgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 108  Q
    |||||| ||||||||||||||||||||| |||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13896285 gagatggatcgcgttcgaaacataatccgcaataaaattattgagcacagacaaaataattagtattgttctttaaattattatatcaatattttagtac 13896384  T
Q  109 tataatacactttaaattagttttgtaataatattagtactttgttgcaatttaa 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13896385 tataatacactttaaattagttttgtaataatattagtactttgttgcaatttaa 13896439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 14036902 - 14037056
Alignment:
Q  9 gagatgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 108  Q
    |||||| ||||||||||||||||||||| |||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14036902 gagatggatcgcgttcgaaacataatccgcaataaaattattgagcacagacaaaataattagtattgttctttaaattattatatcaatattttagtac 14037001  T
Q  109 tataatacactttaaattagttttgtaataatattagtactttgttgcaatttaa 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14037002 tataatacactttaaattagttttgtaataatattagtactttgttgcaatttaa 14037056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 14380393 - 14380527
Alignment:
Q  9 gagatgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 108  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14380393 gagatggatcgcgttcgaaacataatccgcaatgaaattattgagcacaggcaaaataattagtattgtactttaaattattatatcaatattttagtac 14380492  T
Q  109 tataatacactttaaattagttttgtaataatatt 143  Q
    |||||||||| |||  |||||||||||||||||||    
T  14380493 tataatacacattatgttagttttgtaataatatt 14380527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 31686730 - 31686596
Alignment:
Q  9 gagatgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 108  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31686730 gagatggatcgcgttcgaaacataatccgcaatgaaattattgagcacaggcaaaataattagtattgtactttaaattattatatcaatattttagtac 31686631  T
Q  109 tataatacactttaaattagttttgtaataatatt 143  Q
    |||||||||| |||  |||||||||||||||||||    
T  31686630 tataatacacattatgttagttttgtaataatatt 31686596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 31786936 - 31787070
Alignment:
Q  9 gagatgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 108  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31786936 gagatggatcgcgttcgaaacataatccgcaatgaaattattgagcacaggcaaaataattagtattgtactttaaattattatatcaatattttagtac 31787035  T
Q  109 tataatacactttaaattagttttgtaataatatt 143  Q
    |||||||||| |||  |||||||||||||||||||    
T  31787036 tataatacacattatgttagttttgtaataatatt 31787070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 38 - 143
Target Start/End: Original strand, 40254825 - 40254930
Alignment:
Q  38 caatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtactataatacactttaaattagttttgtaat 137  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||    
T  40254825 caatgaaattattgagcacaggcaaaataattagtattgtactttaaattattatatcaatattttagtactataatacacattatgttagttttgtaat 40254924  T
Q  138 aatatt 143  Q
    ||||||    
T  40254925 aatatt 40254930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 142
Target Start/End: Complemental strand, 2443280 - 2443209
Alignment:
Q  70 agtattgttctttaaattattatatcaatattttagtactataatacactttaaattagttttgtaataatat 142  Q
    |||||||| ||||||||| ||||||||||||||||||| ||| |||||| |||||||||||||||||||||||    
T  2443280 agtattgtactttaaatt-ttatatcaatattttagtattatgatacacattaaattagttttgtaataatat 2443209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 9 - 163
Target Start/End: Complemental strand, 21515500 - 21515346
Alignment:
Q  9 gagatgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 108  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||  ||| ||||||| ||||||| |||||||||||||||||||||||||||||    
T  21515500 gagatggatcgcgttcgaaacataatccgcaatgaaattattgagcacagtcaatataattattattgttttttaaattattatatcaatattttagtac 21515401  T
Q  109 tataatacactttaaattagttttgtaataatattagtactttgttgcaatttaa 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21515400 tataatacactttaaattagttttgtaataatattagtactttgttgcaatttaa 21515346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 30019506 - 30019640
Alignment:
Q  9 gagatgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 108  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  30019506 gagatggatcgcgttcgaaacataatccgcaatgaaattattgagcacaggcaaaataattattattgtactttaaattattatatcaatattttagtac 30019605  T
Q  109 tataatacactttaaattagttttgtaataatatt 143  Q
    |||||||||| |||  |||||||||||||||||||    
T  30019606 tataatacacattatgttagttttgtaataatatt 30019640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 31746072 - 31745993
Alignment:
Q  65 taattagtattgttctttaaattattatatcaatattttagtactataatacactttaaattagtttt-gtaataatatt 143  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||    
T  31746072 taattagtattgtactttaaattattatatcaatattttagtactatgatacacattaaattagttttggtaataatatt 31745993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 51125180 - 51125046
Alignment:
Q  9 gagatgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 108  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  51125180 gagatggatcgcgttcgaaacataatccgcaatgaaattattgagcacaggcaaaataattagtattgtactttaaattattatatcaatattttagtac 51125081  T
Q  109 tataatacactttaaattagttttgtaataatatt 143  Q
    |||||||||| |||  |||||||||||||||||||    
T  51125080 tataatacacattatgttagttttgtaataatatt 51125046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 52692828 - 52692962
Alignment:
Q  9 gagatgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 108  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  52692828 gagatggatcgcgttcgaaacataatccgcaatgaaattattgagcacaggcaaaataattagtattgtactttaaattattatatcaatattttagtac 52692927  T
Q  109 tataatacactttaaattagttttgtaataatatt 143  Q
    |||||||||| |||  |||||||||||||||||||    
T  52692928 tataatacacattatgttagttttgtaataatatt 52692962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 38469469 - 38469603
Alignment:
Q  9 gagatgaatcgcgttcgaaacataatccacaatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtac 108  Q
    |||||| ||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38469469 gagatggatcgcgttcaaaacataatccgcaatgaaattattgagcacaggcaaaataattagtattgtactttaaattattatatcaatattttagtac 38469568  T
Q  109 tataatacactttaaattagttttgtaataatatt 143  Q
    |||||||||| |||  |||||||||||||||||||    
T  38469569 tataatacacattatgttagttttgtaataatatt 38469603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 41 - 143
Target Start/End: Original strand, 1527826 - 1527928
Alignment:
Q  41 tgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtactataatacactttaaattagttttgtaataat 140  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||    
T  1527826 tgaaattattgagcacaggcaaaataattagtattgtactttaaattattatatcaatattttagtactataatacacattatgttagttttgtaataat 1527925  T
Q  141 att 143  Q
    |||    
T  1527926 att 1527928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 47141080 - 47141026
Alignment:
Q  89 ttatatcaatattttagtactataatacactttaaattagttttgtaataatatt 143  Q
    |||||||||||||||||||||||||||||| |||  |||||||||||||||||||    
T  47141080 ttatatcaatattttagtactataatacacattatgttagttttgtaataatatt 47141026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 38 - 143
Target Start/End: Complemental strand, 31012377 - 31012272
Alignment:
Q  38 caatgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtactataatacactttaaattagttttgtaat 137  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||    
T  31012377 caatgaaattattgagcacaggcaaaataattagtattgtactttaaattattatatcaatattttagtactataatacacattatgttagttttgtaat 31012278  T
Q  138 aatatt 143  Q
    ||||||    
T  31012277 aatatt 31012272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 41 - 143
Target Start/End: Complemental strand, 25341355 - 25341253
Alignment:
Q  41 tgaaattattgagcacatgcaaaataattagtattgttctttaaattattatatcaatattttagtactataatacactttaaattagttttgtaataat 140  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||    
T  25341355 tgaaattattgagcacaggcaaaataattagtattgtactttaaattattatatcaatattttagtactataatacacattatgttagttttgtaataat 25341256  T
Q  141 att 143  Q
    |||    
T  25341255 att 25341253  T

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Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 41064825 - 41064903
Alignment:
Q  65 taattagtattgttctttaaattattatatcaatattttagtactataatacactttaaattagttttgtaataatatt 143  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  41064825 taattagtattatactttaaattattatatcaatattttagtactatgatacacattaaattagttttgtaataatatt 41064903  T

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Target: chr7; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 12910305 - 12910366
Alignment:
Q  102 ttagtactataatacactttaaattagttttgtaataatattagtactttgttgcaatttaa 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12910305 ttagtactataatacactttaaattagttttgtaataatattagtactttgttgcaatttaa 12910366  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 12910268 - 12910312
Alignment:
Q  105 gtactataatacactttaaattagttttgtaataatattagtact 149  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  12910268 gtactataatacactttaaatcagttttgtaataatattagtact 12910312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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