View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5130_low_14 (Length: 239)
Name: NF5130_low_14
Description: NF5130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5130_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 8733471 - 8733629
Alignment:
| Q |
17 |
aatatagttgaatgtatattattttattacgatgtcgtttttcaattttcgggtatattacgatgtcaatttgaacatataagccaaaataaaataaaca |
116 |
Q |
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| T |
8733471 |
aatatagttgaatgtatattattttattacgatgtcgtttttcaaatttcgggtatattacgatgtcaatttgaacatataagccaaaataaaataaaca |
8733570 |
T |
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| Q |
117 |
tttattcgtttcatttatttactattcaaacagtatatcaatttgtttggtttccttta |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8733571 |
tttattcgtttcatttatttactattcaaacagtatatcaatttatttggtttccttta |
8733629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 8733645 - 8733677
Alignment:
| Q |
189 |
atctcaatttaattattttctcttcatccaaac |
221 |
Q |
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| T |
8733645 |
atctcaatttaattattttctcttcatccaaac |
8733677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 25502436 - 25502278
Alignment:
| Q |
17 |
aatatagttgaatgtatattattttattacgatgtcgtttttcaattttcgggtatattacgatgtcaatttgaacatataagccaaaataaaataaaca |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25502436 |
aatatagttgaatgtatattattttattacgatgtcgtttttcaaatttcgggtatattacgatgtcaatttgaacatataagccaaaataaaataaaca |
25502337 |
T |
|
| Q |
117 |
tttattcgtttcatttatttactattcaaacagtatatcaatttgtttggtttccttta |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
25502336 |
tttattcgtttcatttatttactattcaaacagtatatcaatttatttggtttccttta |
25502278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 25502262 - 25502230
Alignment:
| Q |
189 |
atctcaatttaattattttctcttcatccaaac |
221 |
Q |
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||||||||||||||||||||||||||||||||| |
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|
| T |
25502262 |
atctcaatttaattattttctcttcatccaaac |
25502230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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