View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5130_low_15 (Length: 237)
Name: NF5130_low_15
Description: NF5130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5130_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 43399659 - 43399875
Alignment:
| Q |
1 |
catcatgccaccatgctataacaagataatatataagataagtctcagctttcaaaaacgcacttattaggatcttaaccttttttcatcaacaata--- |
97 |
Q |
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| T |
43399659 |
catcatgccaccatgctataacaagataata----agataagtctcagctttcaaaaacgcacttattaggatcttaaccttttttcatcaacaatatat |
43399754 |
T |
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| Q |
98 |
-ctcaaatcatctcatccaattttggcatcaaattatggaccataactagtaataatccttatcaatcatcattgtagctttattttacggtgccaatat |
196 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43399755 |
actcaaagcatctcatccaattttggcatcaaattatgtaccataactagtaataatccttatcaatcatcattgtagctttattttacggtgcc----- |
43399849 |
T |
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| Q |
197 |
aatggtgaaatctctcatgcaagtgc |
222 |
Q |
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|||||||||||||||||||||||||| |
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| T |
43399850 |
aatggtgaaatctctcatgcaagtgc |
43399875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 43 - 192
Target Start/End: Original strand, 39545881 - 39546027
Alignment:
| Q |
43 |
tctcagctttcaaaaacgcacttattaggatcttaaccttttttcatcaacaatactcaaatcatctcatccaattttggcatcaaattatggaccataa |
142 |
Q |
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|||||||| | |||| | ||||||| |||| |||||||||||||| |||| |||||||| ||| ||||||||||| ||| |||| |||| ||||| |
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| T |
39545881 |
tctcagctcttaaaaccacacttatgaggagcttaaccttttttcctcaa---tactcaaagcattgcatccaatttttccatgaaatagtggatcataa |
39545977 |
T |
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| Q |
143 |
ctagtaataatccttatcaatcatcattgtagctttattttacggtgcca |
192 |
Q |
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| T |
39545978 |
ctagtaataatccttatcaatcatcattgtagctttattttacggtgcca |
39546027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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