View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5130_low_3 (Length: 460)

Name: NF5130_low_3
Description: NF5130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5130_low_3
NF5130_low_3
[»] chr5 (16 HSPs)
chr5 (122-443)||(33679909-33680232)
chr5 (331-443)||(33698716-33698828)
chr5 (9-80)||(33679833-33679904)
chr5 (313-443)||(33867036-33867166)
chr5 (9-70)||(33904413-33904474)
chr5 (9-76)||(33698550-33698617)
chr5 (9-81)||(33865904-33865976)
chr5 (17-72)||(33734329-33734384)
chr5 (17-69)||(33762791-33762843)
chr5 (316-431)||(33749013-33749128)
chr5 (17-72)||(33821659-33821714)
chr5 (316-443)||(33821808-33821935)
chr5 (316-443)||(33734541-33734668)
chr5 (393-441)||(33763448-33763496)
chr5 (17-72)||(33748801-33748856)
chr5 (17-72)||(33834921-33834976)
[»] chr8 (1 HSPs)
chr8 (9-72)||(21305889-21305952)
[»] chr7 (2 HSPs)
chr7 (316-443)||(5470137-5470264)
chr7 (25-70)||(5471194-5471239)
[»] scaffold0001 (1 HSPs)
scaffold0001 (9-79)||(148798-148868)
[»] scaffold0247 (2 HSPs)
scaffold0247 (17-69)||(22155-22207)
scaffold0247 (334-443)||(21882-21991)
[»] scaffold0023 (2 HSPs)
scaffold0023 (20-72)||(114205-114257)
scaffold0023 (330-444)||(90078-90192)
[»] scaffold0193 (1 HSPs)
scaffold0193 (17-72)||(25216-25271)


Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 122 - 443
Target Start/End: Original strand, 33679909 - 33680232
Alignment:
Q  122 aaatagttaagaaattcaagcatctaacgtttatgccataccgtgttgatatttgcaagcatatgtgaaaatactactatttgctcgcataattaattaa 221  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33679909 aaatagttaagaaattcaagcatctagcatttatgccataccgtgttgatatttgcaagcatatgtgaaaatactactatttgcttgcataattaattaa 33680008  T
Q  222 ttctagattacatatactactagatctaaattaacaaagatgtcccctcccctaacatgcacaaataa---tttaattataacctgcactgataacatac 318  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||   |||||||||||| ||||||||||||||||    
T  33680009 ttctagattacatatac-actagatctaaattaacaaagatatcccctcccctaatatgcacaaataacaatttaattataacttgcactgataacatac 33680107  T
Q  319 ctattccccaagagtttgtgtagccttagaatcatatcaatttcatcatgggagaaactttctctattgattgcggggtttaaataattcacccacctca 418  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33680108 ctgttccccaagagtttgtgtagccttagaatcatatcaatttcatcatgggagaaactttctctattgattgcagggtttaaataattcacccacctca 33680207  T
Q  419 atctacaacttttccggcatctatt 443  Q
    |||||||||||||||||||||||||    
T  33680208 atctacaacttttccggcatctatt 33680232  T

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Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 331 - 443
Target Start/End: Original strand, 33698716 - 33698828
Alignment:
Q  331 agtttgtgtagccttagaatcatatcaatttcatcatgggagaaactttctctattgattgcggggtttaaataattcacccacctcaatctacaacttt 430  Q
    |||||||||| |||||||||||||||||||||||| | || |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  33698716 agtttgtgtaaccttagaatcatatcaatttcatcctcggcgaaactttctctgttgattgcggggtttaaataattcaaccacctcaatctacaacttt 33698815  T
Q  431 tccggcatctatt 443  Q
    |||| || |||||    
T  33698816 tccgacacctatt 33698828  T

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Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 33679833 - 33679904
Alignment:
Q  9 aataattcttcacatcattagctgttctacccggaagcctcgcagcaatcaatgaccatctatacatatata 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33679833 aataattcttcacatcattagctgttctacccggaagcctcgcagcaatcaatgaccatctatacatatata 33679904  T

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Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 313 - 443
Target Start/End: Original strand, 33867036 - 33867166
Alignment:
Q  313 acatacctattccccaagagtttgtgtagccttagaatcatatcaatttcatcatgggagaaactttctctattgattgcggggtttaaataattcaccc 412  Q
    |||||||| ||||| || || ||||||| ||||| ||||||||||| |||||| |  || ||||| ||||||||||| | ||||||||||||||| | ||    
T  33867036 acatacctgttccctaaaagcttgtgtaaccttaaaatcatatcaacttcatcctcagaaaaactctctctattgatggtggggtttaaataatttaacc 33867135  T
Q  413 acctcaatctacaacttttccggcatctatt 443  Q
    ||||||||||||||||||||||||| |||||    
T  33867136 acctcaatctacaacttttccggcacctatt 33867166  T

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Target: chr5; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 33904413 - 33904474
Alignment:
Q  9 aataattcttcacatcattagctgttctacccggaagcctcgcagcaatcaatgaccatcta 70  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33904413 aataattcttcacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 33904474  T

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Target: chr5; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 33698550 - 33698617
Alignment:
Q  9 aataattcttcacatcattagctgttctacccggaagcctcgcagcaatcaatgaccatctatacata 76  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||    
T  33698550 aataattcttcacatcattagctgtcctacccggaagccttgcagcaatcaaagaccatctatacata 33698617  T

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Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 33865904 - 33865976
Alignment:
Q  9 aataattcttcacatcattagctgttctacccggaagcctcgcagcaatcaatgaccatctatacatatataa 81  Q
    |||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| | ||||||    
T  33865904 aataattcttcacatcattagctgttctacccgggagtcttgcagcaatcaatgaccatctataaaaatataa 33865976  T

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Target: chr5; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 33734329 - 33734384
Alignment:
Q  17 ttcacatcattagctgttctacccggaagcctcgcagcaatcaatgaccatctata 72  Q
    |||||||||||||| |||||||| |||||||| |||||||||||||||||||||||    
T  33734329 ttcacatcattagcagttctaccaggaagccttgcagcaatcaatgaccatctata 33734384  T

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Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 33762791 - 33762843
Alignment:
Q  17 ttcacatcattagctgttctacccggaagcctcgcagcaatcaatgaccatct 69  Q
    ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  33762791 ttcacatcattcgctgttctaccgggaagccttgcagcaatcaatgaccatct 33762843  T

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Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 431
Target Start/End: Original strand, 33749013 - 33749128
Alignment:
Q  316 tacctattccccaagagtttgtgtagccttagaatcatatcaatttcatcatgggagaaactttctctattgattgcggggtttaaataattcacccacc 415  Q
    ||||||||||||||||| ||||||| ||| || |||||||||  |||||| |  || ||  ||||||| ||||| |  |||||||||||||| | ||| |    
T  33749013 tacctattccccaagaggttgtgtaacctaaggatcatatcagcttcatcctcagaaaagatttctctgttgatggttgggtttaaataatttaaccatc 33749112  T
Q  416 tcaatctacaactttt 431  Q
    ||||||||||||||||    
T  33749113 tcaatctacaactttt 33749128  T

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Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 33821659 - 33821714
Alignment:
Q  17 ttcacatcattagctgttctacccggaagcctcgcagcaatcaatgaccatctata 72  Q
    |||||||||||||| |||||||  |||||||| |||||||||||||||||||||||    
T  33821659 ttcacatcattagccgttctactaggaagccttgcagcaatcaatgaccatctata 33821714  T

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Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 443
Target Start/End: Original strand, 33821808 - 33821935
Alignment:
Q  316 tacctattccccaagagtttgtgtagccttagaatcatatcaatttcatcatgggagaaactttctctattgattgcggggtttaaataattcacccacc 415  Q
    ||||||||||||| ||| ||||||| |||||  |||||||||  |||||| | ||  |  |||||||| || ||    |||||||||||||| |||||||    
T  33821808 tacctattccccaggagattgtgtaaccttatgatcatatcagcttcatcttcggtaatgctttctctgttaatattagggtttaaataatttacccacc 33821907  T
Q  416 tcaatctacaacttttccggcatctatt 443  Q
    |||||||||||||||| || ||||||||    
T  33821908 tcaatctacaactttttcgacatctatt 33821935  T

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Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 443
Target Start/End: Original strand, 33734541 - 33734668
Alignment:
Q  316 tacctattccccaagagtttgtgtagccttagaatcatatcaatttcatcatgggagaaactttctctattgattgcggggtttaaataattcacccacc 415  Q
    ||||||||||| |  |||||||||| |||||| |||||||||| |||||| |  |  || ||||| || |||||    |||  ||||||||| |||||||    
T  33734541 tacctattccctagaagtttgtgtaaccttaggatcatatcaacttcatcctcagcaaagctttcccttttgatgttagggcataaataatttacccacc 33734640  T
Q  416 tcaatctacaacttttccggcatctatt 443  Q
    |||||||||||||||| || ||||||||    
T  33734641 tcaatctacaactttttcgacatctatt 33734668  T

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Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 441
Target Start/End: Original strand, 33763448 - 33763496
Alignment:
Q  393 ggggtttaaataattcacccacctcaatctacaacttttccggcatcta 441  Q
    |||| |||||||||| | ||||||||||||||||||||| |||||||||    
T  33763448 ggggcttaaataatttaaccacctcaatctacaactttttcggcatcta 33763496  T

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Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 33748801 - 33748856
Alignment:
Q  17 ttcacatcattagctgttctacccggaagcctcgcagcaatcaatgaccatctata 72  Q
    |||||||||||||||||||||||  |||| || ||||||||||| | |||||||||    
T  33748801 ttcacatcattagctgttctaccttgaagtcttgcagcaatcaacgtccatctata 33748856  T

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Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 33834921 - 33834976
Alignment:
Q  17 ttcacatcattagctgttctacccggaagcctcgcagcaatcaatgaccatctata 72  Q
    |||||||||||||||||||||||  |||| || ||||||||||| | |||||||||    
T  33834921 ttcacatcattagctgttctaccttgaagtcttgcagcaatcaacgtccatctata 33834976  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 21305889 - 21305952
Alignment:
Q  9 aataattcttcacatcattagctgttctacccggaagcctcgcagcaatcaatgaccatctata 72  Q
    |||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  21305889 aatagttcttcacatcattagctgttctacccggaagccttccagcaatcaatgaccatctata 21305952  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 316 - 443
Target Start/End: Complemental strand, 5470264 - 5470137
Alignment:
Q  316 tacctattccccaagagtttgtgtagccttagaatcatatcaatttcatcatgggagaaactttctctattgattgcggggtttaaataattcacccacc 415  Q
    |||||||| || ||||||||||||| |||||| |||||||||| |||||| |  || || |||| |||||||||   ||| ||||||||||| | |||||    
T  5470264 tacctatttcctaagagtttgtgtaaccttaggatcatatcaacttcatcctcagaaaagctttttctattgatgttgggctttaaataatttatccacc 5470165  T
Q  416 tcaatctacaacttttccggcatctatt 443  Q
    |||||||||||||||| || ||||||||    
T  5470164 tcaatctacaactttttcgacatctatt 5470137  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 5471239 - 5471194
Alignment:
Q  25 attagctgttctacccggaagcctcgcagcaatcaatgaccatcta 70  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||    
T  5471239 attagctgttctacccggaagccttccagcaatcaatgaccatcta 5471194  T

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Target: scaffold0001 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 148798 - 148868
Alignment:
Q  9 aataattcttcacatcattagctgttctacccggaagcctcgcagcaatcaatgaccatctatacatatat 79  Q
    |||| ||||| ||||||||||||||||| |||||||||||  |||||||||||||||||||| | ||||||    
T  148798 aatagttctttacatcattagctgttcttcccggaagccttccagcaatcaatgaccatctaaagatatat 148868  T

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Target: scaffold0247 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 22207 - 22155
Alignment:
Q  17 ttcacatcattagctgttctacccggaagcctcgcagcaatcaatgaccatct 69  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||||||||||    
T  22207 ttcacatcattagctgttctacctggaagccttccagcaatcaatgaccatct 22155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 334 - 443
Target Start/End: Complemental strand, 21991 - 21882
Alignment:
Q  334 ttgtgtagccttagaatcatatcaatttcatcatgggagaaactttctctattgattgcggggtttaaataattcacccacctcaatctacaacttttcc 433  Q
    ||||||| ||||||||||| ||||| |||||| |  || ||| | || || |||||   ||| ||||||||||| ||||||||||||||||||||||| |    
T  21991 ttgtgtaaccttagaatcaaatcaacttcatccttagaaaaattctccctgttgatgtagggatttaaataatttacccacctcaatctacaactttttc 21892  T
Q  434 ggcatctatt 443  Q
    | ||||||||    
T  21891 gacatctatt 21882  T

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Target: scaffold0023 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 114257 - 114205
Alignment:
Q  20 acatcattagctgttctacccggaagcctcgcagcaatcaatgaccatctata 72  Q
    |||||||||||||||||| ||||||||||  | ||||||||||||||||||||    
T  114257 acatcattagctgttctagccggaagccttcccgcaatcaatgaccatctata 114205  T

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Target: scaffold0023; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 444
Target Start/End: Complemental strand, 90192 - 90078
Alignment:
Q  330 gagtttgtgtagccttagaatcatatcaatttcatcatgggagaaactttctctattgattgcggggtttaaataattcacccacctcaatctacaactt 429  Q
    |||||| |||| |||||| |||||||||| |||||| |  || || |||||| | ||||| |  ||||||||||| || | |||||| ||||||||||||    
T  90192 gagtttttgtaaccttaggatcatatcaacttcatcctcagaaaatctttctttgttgatggttgggtttaaatagttaaaccaccttaatctacaactt 90093  T
Q  430 ttccggcatctattt 444  Q
    || || || ||||||    
T  90092 tttcgacacctattt 90078  T

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Target: scaffold0193 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 25271 - 25216
Alignment:
Q  17 ttcacatcattagctgttctacccggaagcctcgcagcaatcaatgaccatctata 72  Q
    |||||||||||||||| ||||||| |||| || ||||||||||||| |||||||||    
T  25271 ttcacatcattagctgatctaccctgaagtcttgcagcaatcaatgtccatctata 25216  T

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