View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5130_low_4 (Length: 433)

Name: NF5130_low_4
Description: NF5130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5130_low_4
NF5130_low_4
[»] chr2 (33 HSPs)
chr2 (1-395)||(39233774-39234168)
chr2 (181-262)||(3834927-3835009)
chr2 (181-261)||(18234191-18234271)
chr2 (12-104)||(18510769-18510861)
chr2 (181-262)||(28784793-28784875)
chr2 (181-242)||(8873686-8873747)
chr2 (181-242)||(27352710-27352771)
chr2 (181-242)||(44075836-44075897)
chr2 (9-93)||(14871962-14872046)
chr2 (181-242)||(5429050-5429111)
chr2 (181-242)||(16011366-16011427)
chr2 (181-242)||(28783807-28783868)
chr2 (181-253)||(4069609-4069681)
chr2 (180-258)||(39475404-39475483)
chr2 (180-238)||(5429798-5429856)
chr2 (181-242)||(2075674-2075735)
chr2 (181-242)||(2076405-2076466)
chr2 (181-238)||(22387069-22387126)
chr2 (185-261)||(2215018-2215093)
chr2 (9-93)||(14877080-14877164)
chr2 (180-259)||(15994460-15994540)
chr2 (183-242)||(914890-914949)
chr2 (181-262)||(26240991-26241073)
chr2 (181-242)||(26882735-26882796)
chr2 (181-241)||(25456608-25456668)
chr2 (387-417)||(39233611-39233641)
chr2 (181-242)||(2238819-2238880)
chr2 (181-242)||(20651484-20651545)
chr2 (181-242)||(28916286-28916347)
chr2 (181-242)||(28917102-28917163)
chr2 (181-242)||(35908420-35908481)
chr2 (12-93)||(36587367-36587448)
chr2 (181-233)||(35907366-35907418)
[»] chr8 (31 HSPs)
chr8 (1-105)||(4672074-4672178)
chr8 (181-242)||(7601706-7601767)
chr8 (180-262)||(11596549-11596632)
chr8 (183-238)||(40784809-40784864)
chr8 (180-242)||(30427080-30427142)
chr8 (183-258)||(42093429-42093505)
chr8 (183-242)||(14445251-14445310)
chr8 (9-96)||(28772019-28772106)
chr8 (180-242)||(15224751-15224813)
chr8 (181-242)||(41723209-41723270)
chr8 (181-252)||(35627036-35627107)
chr8 (181-242)||(14446047-14446108)
chr8 (12-93)||(25987683-25987764)
chr8 (12-93)||(33451461-33451541)
chr8 (181-242)||(37727102-37727163)
chr8 (181-242)||(39528864-39528925)
chr8 (181-242)||(39529560-39529621)
chr8 (181-259)||(42095028-42095107)
chr8 (181-262)||(5339868-5339950)
chr8 (181-258)||(30136099-30136177)
chr8 (181-262)||(30136694-30136776)
chr8 (181-242)||(10499858-10499919)
chr8 (181-242)||(23404254-23404315)
chr8 (181-242)||(23404928-23404989)
chr8 (181-242)||(24700422-24700483)
chr8 (181-242)||(5340540-5340601)
chr8 (181-242)||(24701124-24701185)
chr8 (197-242)||(26636256-26636301)
chr8 (181-242)||(36187179-36187240)
chr8 (12-96)||(2730854-2730938)
chr8 (182-242)||(13388372-13388432)
[»] chr5 (24 HSPs)
chr5 (181-242)||(3099086-3099147)
chr5 (12-104)||(42446176-42446268)
chr5 (182-262)||(3098306-3098386)
chr5 (181-237)||(16899910-16899966)
chr5 (181-242)||(40366260-40366321)
chr5 (183-242)||(6895197-6895256)
chr5 (181-242)||(19432540-19432601)
chr5 (183-242)||(39084311-39084370)
chr5 (12-93)||(13089678-13089759)
chr5 (181-242)||(31559033-31559094)
chr5 (181-242)||(38914273-38914334)
chr5 (182-262)||(6894352-6894434)
chr5 (183-242)||(29096830-29096889)
chr5 (181-262)||(31558239-31558321)
chr5 (181-262)||(32694748-32694830)
chr5 (181-242)||(3779479-3779540)
chr5 (181-242)||(11120210-11120271)
chr5 (16-93)||(21210916-21210993)
chr5 (12-93)||(31748430-31748511)
chr5 (181-242)||(13911173-13911234)
chr5 (198-243)||(24052407-24052452)
chr5 (181-242)||(26710200-26710261)
chr5 (181-242)||(26979934-26979995)
chr5 (197-242)||(35989579-35989624)
[»] chr4 (33 HSPs)
chr4 (12-93)||(2004085-2004166)
chr4 (12-102)||(41262232-41262322)
chr4 (181-262)||(29145212-29145295)
chr4 (181-262)||(29144824-29144907)
chr4 (183-262)||(9170666-9170744)
chr4 (183-242)||(54110480-54110539)
chr4 (180-242)||(39263626-39263688)
chr4 (181-242)||(865416-865477)
chr4 (181-242)||(29517831-29517892)
chr4 (183-242)||(866269-866328)
chr4 (181-234)||(572176-572229)
chr4 (181-262)||(24573729-24573810)
chr4 (181-262)||(44876066-44876147)
chr4 (182-231)||(48614226-48614275)
chr4 (181-242)||(48615217-48615278)
chr4 (181-242)||(53535596-53535657)
chr4 (184-242)||(42712130-42712189)
chr4 (181-242)||(12658385-12658447)
chr4 (180-242)||(54109498-54109559)
chr4 (181-242)||(6056410-6056471)
chr4 (181-242)||(38657828-38657889)
chr4 (181-242)||(51162909-51162970)
chr4 (186-242)||(11701680-11701736)
chr4 (9-93)||(39158196-39158280)
chr4 (12-96)||(51577708-51577792)
chr4 (181-235)||(6711118-6711172)
chr4 (180-242)||(50064669-50064731)
chr4 (181-242)||(15807657-15807718)
chr4 (12-93)||(18316031-18316112)
chr4 (181-242)||(47864490-47864551)
chr4 (32-96)||(5386486-5386550)
chr4 (12-96)||(19651812-19651896)
chr4 (182-242)||(38658498-38658558)
[»] chr3 (39 HSPs)
chr3 (181-253)||(54280853-54280927)
chr3 (181-242)||(21103601-21103662)
chr3 (180-242)||(42121735-42121797)
chr3 (183-262)||(51218107-51218188)
chr3 (182-242)||(54295093-54295153)
chr3 (181-240)||(43631210-43631269)
chr3 (181-262)||(43656191-43656272)
chr3 (181-242)||(15951512-15951573)
chr3 (181-242)||(31090674-31090735)
chr3 (181-242)||(44706911-44706972)
chr3 (181-242)||(44707547-44707608)
chr3 (181-261)||(11058420-11058499)
chr3 (180-262)||(53427407-53427487)
chr3 (30-103)||(25188310-25188384)
chr3 (181-262)||(42489256-42489338)
chr3 (181-262)||(54281672-54281756)
chr3 (181-242)||(4996371-4996432)
chr3 (181-242)||(4996893-4996954)
chr3 (181-242)||(23485500-23485561)
chr3 (181-242)||(31091329-31091390)
chr3 (12-93)||(34307437-34307518)
chr3 (181-242)||(41780392-41780453)
chr3 (181-242)||(44878986-44879047)
chr3 (183-258)||(34985101-34985177)
chr3 (9-105)||(41443075-41443171)
chr3 (218-262)||(53841017-53841061)
chr3 (183-242)||(48045639-48045698)
chr3 (181-242)||(1984847-1984908)
chr3 (197-242)||(3990842-3990887)
chr3 (12-93)||(4494133-4494214)
chr3 (181-242)||(8482558-8482619)
chr3 (12-93)||(9692819-9692900)
chr3 (181-242)||(23143518-23143579)
chr3 (181-242)||(25166743-25166804)
chr3 (14-47)||(39099413-39099446)
chr3 (181-242)||(41354775-41354836)
chr3 (181-226)||(53427978-53428023)
chr3 (197-242)||(54600150-54600195)
chr3 (181-241)||(25165900-25165960)
[»] chr1 (30 HSPs)
chr1 (183-242)||(39841264-39841323)
chr1 (181-261)||(30856098-30856178)
chr1 (181-242)||(46047276-46047337)
chr1 (12-93)||(7918958-7919039)
chr1 (181-242)||(21081040-21081101)
chr1 (181-262)||(46728691-46728774)
chr1 (183-242)||(1743209-1743268)
chr1 (199-262)||(39025394-39025459)
chr1 (181-242)||(171437-171498)
chr1 (184-262)||(29373932-29374012)
chr1 (181-242)||(30856894-30856955)
chr1 (181-242)||(41147275-41147336)
chr1 (181-242)||(51465752-51465813)
chr1 (180-261)||(1743995-1744078)
chr1 (181-258)||(43380516-43380595)
chr1 (181-262)||(51466437-51466521)
chr1 (12-93)||(5771640-5771721)
chr1 (181-242)||(16878746-16878807)
chr1 (181-242)||(19439269-19439330)
chr1 (181-242)||(43379770-43379831)
chr1 (181-242)||(21080376-21080437)
chr1 (181-242)||(26252804-26252864)
chr1 (181-242)||(37910732-37910793)
chr1 (181-238)||(39840511-39840568)
chr1 (181-242)||(39958001-39958062)
chr1 (181-242)||(39958605-39958666)
chr1 (181-242)||(46727929-46727990)
chr1 (181-242)||(50126444-50126505)
chr1 (196-244)||(23551686-23551734)
chr1 (198-242)||(30984145-30984189)
[»] chr7 (28 HSPs)
chr7 (30-106)||(33057491-33057567)
chr7 (181-259)||(26828766-26828843)
chr7 (183-262)||(14419392-14419473)
chr7 (181-242)||(6822605-6822666)
chr7 (181-242)||(21985575-21985636)
chr7 (181-234)||(41345436-41345489)
chr7 (180-242)||(41567920-41567982)
chr7 (181-242)||(11337708-11337769)
chr7 (11-96)||(13152686-13152771)
chr7 (181-242)||(17995850-17995911)
chr7 (181-234)||(37796598-37796651)
chr7 (9-93)||(45419957-45420041)
chr7 (196-242)||(21984874-21984920)
chr7 (181-262)||(40193861-40193943)
chr7 (181-242)||(789299-789360)
chr7 (181-226)||(26829629-26829674)
chr7 (181-242)||(32497001-32497062)
chr7 (12-105)||(34978390-34978483)
chr7 (181-242)||(42276530-42276591)
chr7 (181-242)||(47723476-47723536)
chr7 (183-231)||(46196746-46196794)
chr7 (181-242)||(7945334-7945395)
chr7 (181-242)||(23966316-23966377)
chr7 (181-242)||(26585475-26585536)
chr7 (181-242)||(28762976-28763037)
chr7 (181-238)||(34458851-34458908)
chr7 (181-242)||(35088374-35088435)
chr7 (183-262)||(16779769-16779849)
[»] chr6 (12 HSPs)
chr6 (184-261)||(544343-544422)
chr6 (187-261)||(3184691-3184765)
chr6 (181-242)||(1175100-1175161)
chr6 (181-242)||(476922-476983)
chr6 (181-242)||(477647-477708)
chr6 (30-96)||(8645420-8645486)
chr6 (197-242)||(9699153-9699198)
chr6 (181-242)||(24051256-24051317)
chr6 (181-242)||(29979222-29979283)
chr6 (181-242)||(31170213-31170274)
chr6 (181-242)||(32403976-32404037)
chr6 (182-242)||(2812494-2812554)
[»] scaffold0785 (1 HSPs)
scaffold0785 (180-242)||(1568-1630)
[»] scaffold0014 (1 HSPs)
scaffold0014 (181-262)||(135484-135566)
[»] scaffold0187 (1 HSPs)
scaffold0187 (181-242)||(28284-28345)
[»] scaffold0141 (2 HSPs)
scaffold0141 (181-242)||(10307-10368)
scaffold0141 (197-242)||(11135-11180)


Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 39234168 - 39233774
Alignment:
Q  1 ctctccaatgttttgatttttgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaatatcaatgc 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||| ||||||| ||||||||||||| |||||||||||||||||||    
T  39234168 ctctccaatgttttgatttttgtgccaccacctaaatttctttgtattatttggttgtctaataggttgtcacaagaaaatgttgttcaaatatcaatgc 39234069  T
Q  101 cctttataatactgcaaattgtcaatactatattttaaataacataaatgataggctgctgaaatattattannnnnnnagcttaaatatgatagtcgtc 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||        |||||||||||||| |||||    
T  39234068 cctttatattactgcaaattgtcaatactatattttaaataacataaatgataggctgcggaaatattattattttttg-gcttaaatatgataatcgtc 39233970  T
Q  201 cctgtaatttggtccagttttaattttcgtccctgtaaaaaatactttgaaatgcatccctg--nnnnnnnnttgtttgaaaatgatatctgaatccact 298  Q
    ||||||||||||| || |||| |||||||||| | ||||||| |  ||||||| ||||||||          ||||||||||||| |  || |   ||||    
T  39233969 cctgtaatttggttcaattttgattttcgtccatataaaaaa-aaattgaaatacatccctgcaaaaaaaaattgtttgaaaatggtccctaacctcact 39233871  T
Q  299 attcagcattatcttcatctcacgataacacattcttagcatataatcatgctgtattatgcaacaatcaatgacaattggttacaattttattatt 395  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  39233870 attcagcatgatcttcatctcacgataacacattcttagcatataatcatactgttttatgcaacaatcaatgacaattggttacaattttattatt 39233774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 181 - 262
Target Start/End: Original strand, 3834927 - 3835009
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt-aaaaaatactttgaaatgcatccctg 262  Q
    |||||||||||||| ||||||||||||||||||| |||||| |||||||||||||| |||||| |||||||||| ||||||||    
T  3834927 gcttaaatatgataatcgtccctgtaatttggtctagttttgattttcgtccctgtaaaaaaaaactttgaaatacatccctg 3835009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 181 - 261
Target Start/End: Original strand, 18234191 - 18234271
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaatactttgaaatgcatccct 261  Q
    |||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||| |  ||||||| |||||||    
T  18234191 gcttaaatatgatattcgtctctgtaatttggaccagttttgattttcgtccctgtaaaaaaaaaattgaaatacatccct 18234271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 18510769 - 18510861
Alignment:
Q  12 tttgatttttgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaatatcaatgccctt 104  Q
    ||||||||||||  ||  |||||||||||||||||||||| | |||| ||||||| ||||||||||||| |||||||||||| || |||||||    
T  18510769 tttgatttttgtgtcattacctaaatttctttgtattatttggttgtctaataggttgtcacaagaaaatgttgttcaaataacattgccctt 18510861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 28784875 - 28784793
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaa-aaaatactttgaaatgcatccctg 262  Q
    |||||||||| ||| ||||| ||||||||||||| |||||| |||||||||||||||| |||| |||||||||| ||||||||    
T  28784875 gcttaaatattataatcgtctctgtaatttggtcaagttttgattttcgtccctgtaaaaaaaaactttgaaatacatccctg 28784793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 8873686 - 8873747
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||  ||||||||||||||||| || ||||||||||||||||||||||||||    
T  8873686 gcttaaatatgattttcgtccctgtaatttggacccgttttaattttcgtccctgtaaaaaa 8873747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 27352771 - 27352710
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| |||||||| ||||||| |||||||| |||||||||||||||||||||    
T  27352771 gcttaaatatgataatcgtccctataatttgatccagtttgaattttcgtccctgtaaaaaa 27352710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 44075836 - 44075897
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||| || |||||||    
T  44075836 gcttaaatatgataatcgtccctgtaatttggtccagttttgattttcgtctctataaaaaa 44075897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 14871962 - 14872046
Alignment:
Q  9 tgttttgatttttgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaata 93  Q
    ||||||||||||||| |||| |||||||||||||||||| ||| |||||| ||| | | ||| |||||||| |||||||||||||    
T  14871962 tgttttgatttttgtgccactacctaaatttctttgtataatttgattgtctaacaagttgttacaagaaatggttgttcaaata 14872046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 5429050 - 5429111
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||| | | |||||||||||||||| ||||||| ||||||||||||||||||||    
T  5429050 gcttaaatatgaaaattgtccctgtaatttggttcagttttgattttcgtccctgtaaaaaa 5429111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 16011366 - 16011427
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| |||| | |||||||| |||||||||| ||||||||||||||||||||    
T  16011366 gcttaaatatgataatcgttcttgtaatttagtccagttttgattttcgtccctgtaaaaaa 16011427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 28783807 - 28783868
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| |||||| |||||||| ||||| ||||||||||||||| |||||||||    
T  28783807 gcttaaatatgataatcgtccatgtaatttagtccaattttaattttcgtccatgtaaaaaa 28783868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 181 - 253
Target Start/End: Original strand, 4069609 - 4069681
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaatactttgaaat 253  Q
    |||||||||||||| | |||||| ||||||||  ||||||||||||||||| |||||||||| | ||||||||    
T  4069609 gcttaaatatgataattgtccctataatttgggtcagttttaattttcgtctctgtaaaaaaaaatttgaaat 4069681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 258
Target Start/End: Original strand, 39475404 - 39475483
Alignment:
Q  180 agcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgta-aaaaatactttgaaatgcatc 258  Q
    ||||||||||| ||| ||||| |||||||||| ||||||||| |||||||| |||||| ||||| |||||||||| ||||    
T  39475404 agcttaaatataataatcgtctctgtaatttgatccagttttgattttcgttcctgtagaaaaaaactttgaaatacatc 39475483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 5429856 - 5429798
Alignment:
Q  180 agcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaa 238  Q
    ||||||||||||||| |||||||| |||||||||||| |||| ||||||||||| ||||    
T  5429856 agcttaaatatgataatcgtccctataatttggtccaattttgattttcgtcccagtaa 5429798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 2075674 - 2075735
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| ||||||||||||||| |  ||||||| |||||||||||| |||||||    
T  2075674 gcttaaatatgataatcgtccctgtaatttaggtcagttttgattttcgtccctataaaaaa 2075735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 2076466 - 2076405
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||| ||||||||| | |||||| ||||||||||||||||| |||||||||| |||||||||    
T  2076466 gctttaatatgataattgtccctataatttggtccagttttgattttcgtccttgtaaaaaa 2076405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 22387126 - 22387069
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaa 238  Q
    |||||||||||||  ||||||||||||||||| |  ||||||||||||||||||||||    
T  22387126 gcttaaatatgattttcgtccctgtaatttggactcgttttaattttcgtccctgtaa 22387069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 261
Target Start/End: Complemental strand, 2215093 - 2215018
Alignment:
Q  185 aaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaatactttgaaatgcatccct 261  Q
    |||||| ||| ||||||||||||||||| |||||||| |||||||| |||| |||||| | |||||||| |||||||    
T  2215093 aaatataataatcgtccctgtaatttgggccagttttgattttcgt-cctgcaaaaaaaattttgaaatacatccct 2215018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 14877080 - 14877164
Alignment:
Q  9 tgttttgatttttgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaata 93  Q
    ||||||||||||||| |||| ||||||||||||||||   ||| | |||| ||| | | |||||||||||| |||||||||||||    
T  14877080 tgttttgatttttgtgccactacctaaatttctttgttaaatttggttgtctaacaagttgtcacaagaaatggttgttcaaata 14877164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 259
Target Start/End: Complemental strand, 15994540 - 15994460
Alignment:
Q  180 agcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaa-aaaatactttgaaatgcatcc 259  Q
    ||||||||||||||| |||||| | |||||||   ||||||| |||||||||||||||| |||| |||||||||| |||||    
T  15994540 agcttaaatatgataatcgtccatataatttgagtcagttttgattttcgtccctgtaaaaaaaaactttgaaatacatcc 15994460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 914949 - 914890
Alignment:
Q  183 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||| ||||||||||||||| | | |||||||||||||| ||||| ||||||    
T  914949 ttaaatatgataatcgtccctgtaattttggctagttttaattttcgaccctgcaaaaaa 914890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 26241073 - 26240991
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaa-aaaatactttgaaatgcatccctg 262  Q
    |||||||||||||| | |||||||||||||||  | ||||| | |||||||||||||| |||| |||||||| | ||||||||    
T  26241073 gcttaaatatgatattagtccctgtaatttgggtcggttttgaatttcgtccctgtaaaaaaaaactttgaattacatccctg 26240991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 26882796 - 26882735
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||  |||||| ||||||||||  | ||||| ||||||||||||||||||||    
T  26882796 gcttaaatatgattttcgtccatgtaatttgggtccgttttgattttcgtccctgtaaaaaa 26882735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 25456668 - 25456608
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaa 241  Q
    |||||||||||||| |||||  ||||| |||| |||||||| | |||||||||||||||||    
T  25456668 gcttaaatatgataatcgtcagtgtaacttggaccagttttcaatttcgtccctgtaaaaa 25456608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 417
Target Start/End: Complemental strand, 39233641 - 39233611
Alignment:
Q  387 tttattattttgccgcctggttgttctctgt 417  Q
    |||||||||||||||||||||||||||||||    
T  39233641 tttattattttgccgcctggttgttctctgt 39233611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 2238880 - 2238819
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||  |  |||||||||||||||| | | |||| ||||||||||||||||||||    
T  2238880 gcttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgtaaaaaa 2238819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 20651484 - 20651545
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| | ||||||||||| |   |||||||| | ||||||||||||||||||    
T  20651484 gcttaaatatgatattagtccctgtaatataagccagttttgaatttcgtccctgtaaaaaa 20651545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 28916286 - 28916347
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||  |  |||||||||||||||| | | |||| ||||||||||||||||||||    
T  28916286 gcttaaatatgcaaaccgtccctgtaatttggacgaattttgattttcgtccctgtaaaaaa 28916347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 28917163 - 28917102
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||  |  |||||||||||||||| | | |||| ||||||||||||||||||||    
T  28917163 gcttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgtaaaaaa 28917102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 35908481 - 35908420
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||| | | |||| |||||||||| | |||||| |||||||||| |||||||||    
T  35908481 gcttaaatatgacatttgtccatgtaatttgggcgagttttgattttcgtccttgtaaaaaa 35908420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 36587448 - 36587367
Alignment:
Q  12 tttgatttttgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaata 93  Q
    |||||||||||| |||| | |||||||||||||||| |||   ||||  || ||| ||||| |||||| |||||||||||||    
T  36587448 tttgatttttgtgccactatctaaatttctttgtataatttagttgtccaaaaggttgtcagaagaaatggttgttcaaata 36587367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 35907366 - 35907418
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccc 233  Q
    |||| ||||||||| | ||||||||||||||||| |||||| |||||| ||||    
T  35907366 gcttcaatatgataattgtccctgtaatttggtctagttttgattttcatccc 35907418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 4672074 - 4672178
Alignment:
Q  1 ctctccaatgttttgatttttgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaatatcaatgc 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||||||||||||| |||||||||||||||||||    
T  4672074 ctctccaatgttttgatttttgtaccaccgcctaaatttctttgtattatttggttgtctaatagggtgtcacaagaaaaagttgttcaaatatcaatgc 4672173  T
Q  101 ccttt 105  Q
    |||||    
T  4672174 ccttt 4672178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 7601767 - 7601706
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  7601767 gcttaaatatgataatcgtccctgtaatttgggccagttttgattttcgtccctgtaaaaaa 7601706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 180 - 262
Target Start/End: Complemental strand, 11596632 - 11596549
Alignment:
Q  180 agcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaa-aaaatactttgaaatgcatccctg 262  Q
    ||||||||||||| | ||||||| ||||||||| |||||||| |||||||||||||||| |||| |||||||||| ||||||||    
T  11596632 agcttaaatatgagaatcgtcccagtaatttggaccagttttgattttcgtccctgtaaaaaaaaactttgaaatacatccctg 11596549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 40784809 - 40784864
Alignment:
Q  183 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaa 238  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  40784809 ttaaatatgataatcgtccctgtaatttggtccagttttgattttcgtccctgtaa 40784864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 30427080 - 30427142
Alignment:
Q  180 agcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    ||||||||||||||| |||||||||||||||||| ||||||| |||||||||| |||||||||    
T  30427080 agcttaaatatgataatcgtccctgtaatttggttcagtttttattttcgtccttgtaaaaaa 30427142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 42093429 - 42093505
Alignment:
Q  183 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt-aaaaaatactttgaaatgcatc 258  Q
    |||||||||||| ||||||||||||||||  |||||||| |||||||||||||| |||||| |||||||||| ||||    
T  42093429 ttaaatatgataatcgtccctgtaatttgaaccagttttgattttcgtccctgtaaaaaaaaactttgaaatacatc 42093505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 14445251 - 14445310
Alignment:
Q  183 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||| |||||  |||||||||||| |||||||||||||||||||||||||||    
T  14445251 ttaaatatgataatcgtctttgtaatttggtcaagttttaattttcgtccctgtaaaaaa 14445310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 28772106 - 28772019
Alignment:
Q  9 tgttttgatttttgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaatatca 96  Q
    ||||||||||||||| |||| |||||||||||||||||| |||   ||||  || ||| |||||||||||| ||||||||||||||||    
T  28772106 tgttttgatttttgtgccactacctaaatttctttgtataatttagttgtccaaaaggttgtcacaagaaatggttgttcaaatatca 28772019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 15224751 - 15224813
Alignment:
Q  180 agcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    ||||||||||||||  ||||||||||||||||| || ||||| ||||||||||||||||||||    
T  15224751 agcttaaatatgattttcgtccctgtaatttgggcccgttttgattttcgtccctgtaaaaaa 15224813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 41723209 - 41723270
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| ||||||||||||||||||| |||||| |||| ||||||| |||||||    
T  41723209 gcttaaatatgataatcgtccctgtaatttggtcaagttttgatttccgtccctataaaaaa 41723270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 252
Target Start/End: Complemental strand, 35627107 - 35627036
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaatactttgaaa 252  Q
    ||||||| |||||  |||||||||||||||||  ||||||| |||||||| ||||||||||| |||||||||    
T  35627107 gcttaaacatgattttcgtccctgtaatttggatcagttttgattttcgttcctgtaaaaaaaactttgaaa 35627036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 14446108 - 14446047
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| ||||||||||||||||| ||| |||| |||||| |||| ||||||||    
T  14446108 gcttaaatatgataatcgtccctgtaatttgggccaattttgattttcatccccgtaaaaaa 14446047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 25987764 - 25987683
Alignment:
Q  12 tttgatttttgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaata 93  Q
    ||||||||||||  ||| |||||||||||||||||| |||   ||||| || ||| |||||||||||| |||||||||||||    
T  25987764 tttgatttttgtgtcactacctaaatttctttgtataatttagttgttcaaaaggttgtcacaagaaatggttgttcaaata 25987683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 33451541 - 33451461
Alignment:
Q  12 tttgatttttgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaata 93  Q
    |||||||||||| |||| |||||| ||||||||||| ||| |||||| ||| | | |||||||||||| |||||||||||||    
T  33451541 tttgatttttgtgccactacctaa-tttctttgtataatttgattgtctaacaagttgtcacaagaaagggttgttcaaata 33451461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 37727102 - 37727163
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||  |||||| |||||||| | |||||||| ||||||||||||||||||||    
T  37727102 gcttaaatatgattttcgtccatgtaatttagaccagttttgattttcgtccctgtaaaaaa 37727163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 39528864 - 39528925
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||  |||||||||||||||||  ||||||| ||||| ||||||||||||||    
T  39528864 gcttaaatatgattttcgtccctgtaatttgggtcagttttgatttttgtccctgtaaaaaa 39528925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 39529621 - 39529560
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||  | |||||||||||||||  ||||||| ||||||||||||||||||||    
T  39529621 gcttaaatatgatttttgtccctgtaatttggatcagttttgattttcgtccctgtaaaaaa 39529560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 259
Target Start/End: Complemental strand, 42095107 - 42095028
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt-aaaaaatactttgaaatgcatcc 259  Q
    |||||||||| ||| ||||| |||||||||| || |||||||||||||||| || | |||||| |||||||||| |||||    
T  42095107 gcttaaatataataatcgtctctgtaatttgatctagttttaattttcgtctctataaaaaaaaactttgaaatacatcc 42095028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 262
Target Start/End: Original strand, 5339868 - 5339950
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt-aaaaaatactttgaaatgcatccctg 262  Q
    |||||||||||||| | |||||||||||||||  | ||||| | |||||||||||| |||||| |||||||| | ||||||||    
T  5339868 gcttaaatatgatattagtccctgtaatttgggtcggttttgaatttcgtccctgtaaaaaaaaactttgaattacatccctg 5339950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 30136099 - 30136177
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt-aaaaaatactttgaaatgcatc 258  Q
    |||||||||||||| ||||| |||||||||| || | || | |||||||||||||| |||||| |||||||||| ||||    
T  30136099 gcttaaatatgataatcgtctctgtaatttgatcaaattatgattttcgtccctgtaaaaaaaaactttgaaatacatc 30136177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 30136776 - 30136694
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaa-aaaatactttgaaatgcatccctg 262  Q
    |||||||||||||| |||||| |||||||||  ||| |||| |||||  ||||||||| |||| |||||||||| ||||||||    
T  30136776 gcttaaatatgataatcgtccatgtaatttgaaccaattttgatttttatccctgtaaaaaaaaactttgaaatacatccctg 30136694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 10499858 - 10499919
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| | |||||||||||||||  | ||||| | ||||||||||||||||||    
T  10499858 gcttaaatatgatattagtccctgtaatttgggtcggttttgaatttcgtccctgtaaaaaa 10499919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 23404254 - 23404315
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||  ||||||||||||||||| ||  |||| |||||| |||||||||||||    
T  23404254 gcttaaatatgattttcgtccctgtaatttggacccattttcattttcctccctgtaaaaaa 23404315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 23404989 - 23404928
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||  ||||||||||||||| | || ||||| |||||||| |||||||||||    
T  23404989 gcttaaatatgattttcgtccctgtaattttggcccgttttgattttcgttcctgtaaaaaa 23404928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 24700422 - 24700483
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| | |||||||||||||||  | ||||| | ||||||||||||||||||    
T  24700422 gcttaaatatgatattagtccctgtaatttgggtcggttttgaatttcgtccctgtaaaaaa 24700483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 5340601 - 5340540
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||| ||  |||| |||||||||||| || ||||| |||||||||| |||||||||    
T  5340601 gcttaaatatcattttcgttcctgtaatttgggcccgttttgattttcgtccttgtaaaaaa 5340540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 24701185 - 24701124
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||| ||  |||||||||||||||||  | ||||| |||||||||| |||||||||    
T  24701185 gcttaaatatcattttcgtccctgtaatttgggtccgttttgattttcgtccttgtaaaaaa 24701124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 26636301 - 26636256
Alignment:
Q  197 cgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||||| | | |||| ||||||||||||||||||||    
T  26636301 cgtccctgtaatttgggctaattttgattttcgtccctgtaaaaaa 26636256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 36187240 - 36187179
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||  ||||||||||||||| |  ||||||| |||||| ||||| |||||||    
T  36187240 gcttaaatatgattttcgtccctgtaatttagatcagttttgattttcatccctataaaaaa 36187179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 2730938 - 2730854
Alignment:
Q  12 tttgatttttgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaatatca 96  Q
    |||||||||||| |||| | |||||||| ||||||| |||   || || || ||| ||||||||||||  |||||||||||||||    
T  2730938 tttgatttttgtgccactatctaaatttatttgtataatttagttattcaaaaggttgtcacaagaaattgttgttcaaatatca 2730854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 13388372 - 13388432
Alignment:
Q  182 cttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    ||||||||||||| | ||| |||||||||||  | ||||| | ||||||||||||||||||    
T  13388372 cttaaatatgatattagtctctgtaatttgggtcggttttgaatttcgtccctgtaaaaaa 13388432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 3099147 - 3099086
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  3099147 gcttaaatatgataatcgtccatgtaatttggtccagttttaattttcgtccctgtaaaaaa 3099086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 42446268 - 42446176
Alignment:
Q  12 tttgatttttgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaatatcaatgccctt 104  Q
    |||||||||||| |||  |||||||||||||||||||||| | |||| ||||||| ||||||||||||| |||||||||||| || |||||||    
T  42446268 tttgatttttgtgccattacctaaatttctttgtattatttggttgtctaataggttgtcacaagaaaatgttgttcaaataacattgccctt 42446176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 3098306 - 3098386
Alignment:
Q  182 cttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaatactttgaaatgcatccctg 262  Q
    ||||||||||||| ||||||||||||||| |  ||||||| ||||||||| |||||||||| |||||||||| ||||||||    
T  3098306 cttaaatatgataatcgtccctgtaatttaggtcagttttgattttcgtctctgtaaaaaaaactttgaaatacatccctg 3098386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 16899910 - 16899966
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgta 237  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  16899910 gcttaaatatgataatcgtccctgtaatttggtccagttttgattttcgtccctgta 16899966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 40366260 - 40366321
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| |||||||||||||||||  ||||||| ||||||||||||||||||||    
T  40366260 gcttaaatatgataatcgtccctgtaatttgggtcagttttgattttcgtccctgtaaaaaa 40366321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 6895256 - 6895197
Alignment:
Q  183 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||| |||||| ||||||||||||||||||| ||||||||||| ||||||||    
T  6895256 ttaaatatgataatcgtccttgtaatttggtccagttttgattttcgtcccagtaaaaaa 6895197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 19432601 - 19432540
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| |||| ||||||||||||| ||||||| ||||| ||||||||||||||    
T  19432601 gcttaaatatgataatcgttcctgtaatttggttcagttttgatttttgtccctgtaaaaaa 19432540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 39084370 - 39084311
Alignment:
Q  183 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||| |||||||| |||||||| ||| |||| ||||||||||||||||||||    
T  39084370 ttaaatatgataatcgtccctctaatttgggccaattttgattttcgtccctgtaaaaaa 39084311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 13089759 - 13089678
Alignment:
Q  12 tttgatttttgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaata 93  Q
    ||||||||||||  ||| |||||||||||||||||| |||  |||||| || ||| ||||| |||||| |||||||||||||    
T  13089759 tttgatttttgtgtcactacctaaatttctttgtataatttaattgttcaaaaggttgtcataagaaatggttgttcaaata 13089678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 31559094 - 31559033
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| ||||| ||||||||| | |||||||| |||||||||||| |||||||    
T  31559094 gcttaaatatgataatcgtcactgtaattttggccagttttgattttcgtccctataaaaaa 31559033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 38914334 - 38914273
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||  |||||||| |||||| | |||||||| ||||||||||||||||||||    
T  38914334 gcttaaatatgattttcgtccctataatttagaccagttttgattttcgtccctgtaaaaaa 38914273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 6894352 - 6894434
Alignment:
Q  182 cttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt--aaaaaatactttgaaatgcatccctg 262  Q
    ||||||||||||| || ||||| |||||| | |||||||| ||||||||||||||   ||||| |||||||||| ||||||||    
T  6894352 cttaaatatgataatcatccctctaatttaggccagttttgattttcgtccctgttataaaaaaactttgaaatacatccctg 6894434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 29096830 - 29096889
Alignment:
Q  183 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||| | |||||| ||||||||||||||||||| ||||| || |||||||||||    
T  29096830 ttaaatatgaaaatcgtccatgtaatttggtccagttttgatttttgttcctgtaaaaaa 29096889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 262
Target Start/End: Original strand, 31558239 - 31558321
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaa-aaatactttgaaatgcatccctg 262  Q
    |||||||||||||| ||||| ||||||||||   ||||||| |||||||||| |||||| ||| |||||||||  ||||||||    
T  31558239 gcttaaatatgataatcgtcactgtaatttgagtcagttttgattttcgtccatgtaaacaaaaactttgaaacacatccctg 31558321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 32694830 - 32694748
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt-aaaaaatactttgaaatgcatccctg 262  Q
    |||||||||||||| ||| ||||||| ||||| |||||||| ||||||||| || | |||||| || ||||||| ||||||||    
T  32694830 gcttaaatatgataatcgcccctgtagtttgggccagttttgattttcgtctctttaaaaaaaaacattgaaatacatccctg 32694748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 3779540 - 3779479
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| ||||||  |||||||| || | |||| ||||||||||||||||||||    
T  3779540 gcttaaatatgataatcgtcctagtaatttgatcaaattttgattttcgtccctgtaaaaaa 3779479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 11120210 - 11120271
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||  || || ||||||||||| || ||||| ||||||||||||||||||||    
T  11120210 gcttaaatatgattttcatctctgtaatttgggcccgttttgattttcgtccctgtaaaaaa 11120271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 21210916 - 21210993
Alignment:
Q  16 atttttgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaata 93  Q
    |||||||||| || |||||||||||||||||| ||  | ||||| |||| | |||||||  |||||||||||||||||    
T  21210916 atttttgtactactacctaaatttctttgtataatgtggttgttcaataagttgtcacataaaaaggttgttcaaata 21210993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 31748430 - 31748511
Alignment:
Q  12 tttgatttttgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaata 93  Q
    |||||||||||| | || |||||||||||||||||| ||| ||||||  |||| | |||||||| ||| | |||||||||||    
T  31748430 tttgatttttgtgctacaacctaaatttctttgtataatttgattgtccaataagttgtcacaaaaaatgattgttcaaata 31748511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 13911173 - 13911234
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| | |||| ||||||||||  | ||||| | ||||||||||||||||||    
T  13911173 gcttaaatatgatattagtccatgtaatttgggtcggttttgaatttcgtccctgtaaaaaa 13911234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 24052452 - 24052407
Alignment:
Q  198 gtccctgtaatttggtccagttttaattttcgtccctgtaaaaaat 243  Q
    ||||||||||||||| |  ||||| |||||||||||||||||||||    
T  24052452 gtccctgtaatttggacgcgttttgattttcgtccctgtaaaaaat 24052407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 26710200 - 26710261
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||| ||  || |||| ||||||||| || ||||| ||||||||||||||||||||    
T  26710200 gcttaaatatcattttcatcccagtaatttgggcccgttttgattttcgtccctgtaaaaaa 26710261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 26979934 - 26979995
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||| ||  || |||| ||||||||| || ||||| ||||||||||||||||||||    
T  26979934 gcttaaatatcattttcatcccagtaatttgggcccgttttgattttcgtccctgtaaaaaa 26979995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 35989624 - 35989579
Alignment:
Q  197 cgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||||| | | |||| ||||||||||||||||||||    
T  35989624 cgtccctgtaatttgggctaattttgattttcgtccctgtaaaaaa 35989579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 2004166 - 2004085
Alignment:
Q  12 tttgatttttgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaata 93  Q
    ||||||||||||| ||| |||||||||||||| ||||||| |||||| ||||||| | ||||||||||||||||||||||||    
T  2004166 tttgatttttgtatcactacctaaatttctttatattatttgattgtctaataggttatcacaagaaaaggttgttcaaata 2004085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 41262322 - 41262232
Alignment:
Q  12 tttgatttttgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaatatcaatgccc 102  Q
    |||||||||||| |||  | |||||||||||||||||||| | |||| ||||||| |||||||||||||||||||||||||| || |||||    
T  41262322 tttgatttttgtgccattatctaaatttctttgtattatttggttgtctaataggttgtcacaagaaaaggttgttcaaataacattgccc 41262232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 29145295 - 29145212
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt--aaaaaatactttgaaatgcatccctg 262  Q
    |||||||||||||| ||||||||||||||||||| | |||| ||||||||||||||  |||||| |||||||||| ||||||||    
T  29145295 gcttaaatatgataatcgtccctgtaatttggtcaaattttgattttcgtccctgtgaaaaaaaaactttgaaatacatccctg 29145212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 29144907 - 29144824
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt--aaaaaatactttgaaatgcatccctg 262  Q
    |||||||||||||| |||||||||||||||| || | |||| ||||||||||||||  |||||| |||||||||| ||||||||    
T  29144907 gcttaaatatgataatcgtccctgtaatttgatcaaattttgattttcgtccctgtgaaaaaaaaactttgaaatacatccctg 29144824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 9170744 - 9170666
Alignment:
Q  183 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaatactttgaaatgcatccctg 262  Q
    |||||||||||| |||| | |||| |||||||||||||| |||||||||||||||||||| |||||||||| ||| ||||    
T  9170744 ttaaatatgataatcgttcttgtattttggtccagttttgattttcgtccctgtaaaaaa-actttgaaatacattcctg 9170666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 54110539 - 54110480
Alignment:
Q  183 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||| |||||||||||||||| | ||||||| ||||||||||||||||||||    
T  54110539 ttaaatatgataatcgtccctgtaatttgtttcagttttgattttcgtccctgtaaaaaa 54110480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 39263626 - 39263688
Alignment:
Q  180 agcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    ||||||||||||||  ||||||||||||||||| |||||||| |||||||| |||||||||||    
T  39263626 agcttaaatatgattttcgtccctgtaatttggaccagttttgattttcgttcctgtaaaaaa 39263688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 865416 - 865477
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| || ||||||||||||||  ||||||| ||||||||||||||||||||    
T  865416 gcttaaatatgataatcatccctgtaatttgggtcagttttgattttcgtccctgtaaaaaa 865477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 29517892 - 29517831
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||| ||||||||| |||||||||||||||||| || |||| ||||||||||||||||||||    
T  29517892 gctttaatatgataatcgtccctgtaatttggttcaattttgattttcgtccctgtaaaaaa 29517831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 866328 - 866269
Alignment:
Q  183 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||| ||||||||||||||| ||| |||||| |||||||||| |||||||||    
T  866328 ttaaatatgataatcgtccctgtaatttagtctagttttgattttcgtccttgtaaaaaa 866269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 572229 - 572176
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccct 234  Q
    |||||||||||||| | |||||| ||||||||||||||||| ||||||||||||    
T  572229 gcttaaatatgataattgtccctataatttggtccagttttgattttcgtccct 572176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 262
Target Start/End: Original strand, 24573729 - 24573810
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaatactttgaaatgcatccctg 262  Q
    ||||||||||||||   ||| |||||||||||||||||||| |||||||| | ||||||||| |  ||||||| ||||||||    
T  24573729 gcttaaatatgataactgtctctgtaatttggtccagttttgattttcgtacgtgtaaaaaaaaaattgaaatacatccctg 24573810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 262
Target Start/End: Original strand, 44876066 - 44876147
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaatactttgaaatgcatccctg 262  Q
    |||||||||||||| | || | ||||||||||  |||||||  ||||||| ||||||||||| |||||||||| ||||||||    
T  44876066 gcttaaatatgataattgttcttgtaatttgggtcagttttgcttttcgttcctgtaaaaaaaactttgaaatacatccctg 44876147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 48614226 - 48614275
Alignment:
Q  182 cttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtc 231  Q
    ||||||||||||| |||||| ||||| |||||||||||||||||||||||    
T  48614226 cttaaatatgataatcgtccgtgtaaattggtccagttttaattttcgtc 48614275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 48615278 - 48615217
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| |||||| |||||||||| | |||||| |||||| |||||||||||||    
T  48615278 gcttaaatatgatattcgtccatgtaatttggacgagttttgattttcatccctgtaaaaaa 48615217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 53535657 - 53535596
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||| ||  ||||||||||||||||| || ||||| ||||||||||||||||||||    
T  53535657 gcttaaatatcattttcgtccctgtaatttgggcccgttttgattttcgtccctgtaaaaaa 53535596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 42712189 - 42712130
Alignment:
Q  184 taaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccct-gtaaaaaa 242  Q
    |||||||||||||||||| |||||||||| |||||||| ||||| |||||| ||||||||    
T  42712189 taaatatgatagtcgtccttgtaatttggaccagttttgatttttgtccctagtaaaaaa 42712130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 12658385 - 12658447
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtcca-gttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| |||||| |||||||||| |||  |||| ||||||||||||||||||||    
T  12658385 gcttaaatatgataatcgtccatgtaatttgggccatttttttattttcgtccctgtaaaaaa 12658447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 54109498 - 54109559
Alignment:
Q  180 agcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    ||||||||||||||| |||||||||||||||  ||||||||| ||||||  ||||||||||||    
T  54109498 agcttaaatatgataatcgtccctgtaatttactccagttttgattttc-accctgtaaaaaa 54109559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 6056410 - 6056471
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| |||||||| |||||| |  ||||||| ||||||||| ||||||||||    
T  6056410 gcttaaatatgataatcgtccctataatttagggcagttttgattttcgtcactgtaaaaaa 6056471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 38657828 - 38657889
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||  |||||||||||||||||    ||||| ||||||||||||||||||||    
T  38657828 gcttaaatatgattttcgtccctgtaatttgggttcgttttgattttcgtccctgtaaaaaa 38657889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 51162970 - 51162909
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||  |||||| ||||||||||  | ||||| ||||||||||||||||||||    
T  51162970 gcttaaatatgattttcgtccttgtaatttgggtccgttttgattttcgtccctgtaaaaaa 51162909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 11701736 - 11701680
Alignment:
Q  186 aatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    ||||| ||| ||||||||||||||||| |||||||| |||||||||| |||| ||||    
T  11701736 aatattataatcgtccctgtaatttggaccagttttgattttcgtccatgtagaaaa 11701680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 39158196 - 39158280
Alignment:
Q  9 tgttttgatttttgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaata 93  Q
    ||||||| ||||||| || | |||||||||||||||||| ||| | ||||  |||| | |||||||| ||| |||||||||||||    
T  39158196 tgttttggtttttgtgccgctacctaaatttctttgtataatttggttgtccaataagttgtcacaataaatggttgttcaaata 39158280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 51577708 - 51577792
Alignment:
Q  12 tttgatttttgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaatatca 96  Q
    |||||||||||| |||| |||||||||||||| ||| |||   ||||  || ||| |||||||||||| |||| |||||||||||    
T  51577708 tttgatttttgtgccactacctaaatttctttatataatttagttgtccaaaaggttgtcacaagaaatggttattcaaatatca 51577792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 6711172 - 6711118
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctg 235  Q
    |||||||||||||  | ||||||||||||||| |||||||| | |||||||||||    
T  6711172 gcttaaatatgatttttgtccctgtaatttggaccagttttgaatttcgtccctg 6711118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 50064731 - 50064669
Alignment:
Q  180 agcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    ||||||||||||  | ||||||||||||||||| |  ||||| |||||||||| |||||||||    
T  50064731 agcttaaatatgcaattcgtccctgtaatttgggcgcgttttgattttcgtccttgtaaaaaa 50064669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 15807657 - 15807718
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||  |  |||||||||||||||| | | |||| ||||||||||||||||||||    
T  15807657 gcttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgtaaaaaa 15807718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 18316031 - 18316112
Alignment:
Q  12 tttgatttttgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaata 93  Q
    ||||||||||||  ||| |||||||||||||||||| ||| | ||||  || | | ||||| |||||| |||||||||||||    
T  18316031 tttgatttttgtgtcactacctaaatttctttgtataatttggttgtccaacaagttgtcataagaaatggttgttcaaata 18316112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 47864490 - 47864551
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||  |  |||||||||||||||| | | |||| ||||||||||||||||||||    
T  47864490 gcttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgtaaaaaa 47864551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 5386486 - 5386550
Alignment:
Q  32 ctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaatatca 96  Q
    |||||||||||||||| |||   |||| ||| | | |||||||||||| ||||||||||||||||    
T  5386486 ctaaatttctttgtataatttagttgtctaaaaagttgtcacaagaaatggttgttcaaatatca 5386550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 19651896 - 19651812
Alignment:
Q  12 tttgatttttgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaatatca 96  Q
    |||||||||| |  ||| |||||||||||||||||| |||   ||||  || ||| |||||||| ||| ||||||||||||||||    
T  19651896 tttgatttttatgtcactacctaaatttctttgtataatttagttgtccaaaaggttgtcacaaaaaatggttgttcaaatatca 19651812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 38658558 - 38658498
Alignment:
Q  182 cttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    ||||||||||||| | |||||||||||||||  | ||||| | |||||||| |||||||||    
T  38658558 cttaaatatgatattagtccctgtaatttggatcggttttgaatttcgtccttgtaaaaaa 38658498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 181 - 253
Target Start/End: Original strand, 54280853 - 54280927
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctg--taaaaaatactttgaaat 253  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||  ||||||| ||||||||||    
T  54280853 gcttaaatatgataatcgtccctgtaatttggtccagttttgattttcgtccctgtataaaaaaaactttgaaat 54280927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 21103662 - 21103601
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||  ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  21103662 gcttaaatatgattttcgtccctgtaatttggaccagttttgattttcgtccctgtaaaaaa 21103601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 42121797 - 42121735
Alignment:
Q  180 agcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    ||||||||||||||| |||||||| |||||||| ||||||||||||||||| | |||||||||    
T  42121797 agcttaaatatgataatcgtccctataatttggaccagttttaattttcgttcatgtaaaaaa 42121735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 183 - 262
Target Start/End: Original strand, 51218107 - 51218188
Alignment:
Q  183 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt--aaaaaatactttgaaatgcatccctg 262  Q
    |||||||||||| | |||||| ||||||||||||||||| || |||||||||||  |||||| |||||||||| ||||||||    
T  51218107 ttaaatatgataattgtccctataatttggtccagttttgatattcgtccctgtaaaaaaaaaactttgaaatacatccctg 51218188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 54295153 - 54295093
Alignment:
Q  182 cttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    ||||||||||||| |||||| ||||||||||  ||||||| ||||||||||||||||||||    
T  54295153 cttaaatatgataatcgtccatgtaatttgggtcagttttgattttcgtccctgtaaaaaa 54295093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 43631269 - 43631210
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaa 240  Q
    |||||||||||||| |||||| ||| ||||||||||||||| |||||||| |||||||||    
T  43631269 gcttaaatatgataatcgtccatgtgatttggtccagttttgattttcgttcctgtaaaa 43631210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 43656272 - 43656191
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt-aaaaaatactttgaaatgcatccctg 262  Q
    |||||||||||||| |||||| ||||||||||  ||||||| |||||||| ||||| |||||| |||||||||| ||||||||    
T  43656272 gcttaaatatgataatcgtccttgtaatttgggacagttttgattttcgt-cctgtaaaaaaaaactttgaaatacatccctg 43656191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 15951573 - 15951512
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||| ||  ||||||||||||||||| || ||||| ||||||||||||||||||||    
T  15951573 gcttaaatatcattttcgtccctgtaatttgggcccgttttgattttcgtccctgtaaaaaa 15951512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 31090674 - 31090735
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||  ||||||||||||||||| || ||||| |||||||||||| |||||||    
T  31090674 gcttaaatatgattttcgtccctgtaatttggacccgttttgattttcgtccctataaaaaa 31090735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 44706911 - 44706972
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||  |||||||||||||||||  | ||||| ||||||||||||||||||||    
T  44706911 gcttaaatatgattttcgtccctgtaatttgggtccgttttgattttcgtccctgtaaaaaa 44706972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 44707608 - 44707547
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||  ||||||||||||||||| ||  |||| ||||||||||||||||||||    
T  44707608 gcttaaatatgattttcgtccctgtaatttggacccattttgattttcgtccctgtaaaaaa 44707547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 11058499 - 11058420
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaatactttgaaatgcatccct 261  Q
    |||||||||||||  ||||||||||||||| |  ||||||| |||| ||||||||||||||| |||||||||  |||||||    
T  11058499 gcttaaatatgattttcgtccctgtaatttagatcagttttgatttccgtccctgtaaaaaa-actttgaaaaacatccct 11058420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 262
Target Start/End: Original strand, 53427407 - 53427487
Alignment:
Q  180 agcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaatactttgaaatgcatccctg 262  Q
    |||||||||||||||||||| |||||||||| || ||||||| |||||| ||  ||||||||| |  ||||||| ||||||||    
T  53427407 agcttaaatatgatagtcgttcctgtaatttagttcagttttgattttcatctatgtaaaaaaaa--ttgaaatacatccctg 53427487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 25188384 - 25188310
Alignment:
Q  30 acctaaatttctttgtattattagattgtttaatagggtgtcac-aagaaaaggttgttcaaatatcaatgccct 103  Q
    ||||||||||||||||||||||   |||| ||||||| |||||| || ||||||||||||||||| || ||||||    
T  25188384 acctaaatttctttgtattatttagttgtctaataggttgtcacaaaaaaaaggttgttcaaataacattgccct 25188310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 42489338 - 42489256
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt-aaaaaatactttgaaatgcatccctg 262  Q
    |||||||||||||| | |||| ||||||||||  ||||||| ||||||||||| || |||||| ||||||||||  |||||||    
T  42489338 gcttaaatatgataattgtccttgtaatttgggtcagttttgattttcgtccccgtaaaaaaaaactttgaaatatatccctg 42489256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 54281756 - 54281672
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaa---aaaatactttgaaatgcatccctg 262  Q
    |||||||||||||| |||| ||||| |||||| |||  ||| ||||||||||||||||   |||| |||||||||| ||||||||    
T  54281756 gcttaaatatgataatcgttcctgttatttgggccaaatttgattttcgtccctgtaaaaaaaaaaactttgaaatacatccctg 54281672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 4996371 - 4996432
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| | || ||||||||||||  ||||||| | ||||||||||||||||||    
T  4996371 gcttaaatatgatattagttcctgtaatttgggtcagttttgaatttcgtccctgtaaaaaa 4996432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 4996954 - 4996893
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||  ||||||||||||||||| |  ||||| ||||||||| ||||||||||    
T  4996954 gcttaaatatgattttcgtccctgtaatttgggctcgttttgattttcgtcactgtaaaaaa 4996893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 23485500 - 23485561
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| | |||||||||||||||  | ||||| | ||||||||||||||||||    
T  23485500 gcttaaatatgatattagtccctgtaatttgggtcggttttgaatttcgtccctgtaaaaaa 23485561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 31091390 - 31091329
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||  |||||  |||||||||| || ||||| ||||||||||||||||||||    
T  31091390 gcttaaatatgattttcgtctttgtaatttgggcccgttttgattttcgtccctgtaaaaaa 31091329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 34307518 - 34307437
Alignment:
Q  12 tttgatttttgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaata 93  Q
    |||| |||||||| ||| |||||||||||||||||| ||| | ||||  |||| | |||||||||||| | |||||||||||    
T  34307518 tttggtttttgtatcactacctaaatttctttgtataatttggttgtccaataagttgtcacaagaaaggattgttcaaata 34307437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 41780453 - 41780392
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||  ||||||||||||||||| || ||||| ||||| ||||||||| ||||    
T  41780453 gcttaaatatgattttcgtccctgtaatttggacccgttttgatttttgtccctgtagaaaa 41780392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 44879047 - 44878986
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| | |||||||||||||||  | ||||| | ||||||||||||||||||    
T  44879047 gcttaaatatgatattagtccctgtaatttgggtcggttttgaatttcgtccctgtaaaaaa 44878986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 34985101 - 34985177
Alignment:
Q  183 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt-aaaaaatactttgaaatgcatc 258  Q
    |||||||| ||| |||||  |||||||||||||| |||| |||||||||| ||| |||||| |||||||||| ||||    
T  34985101 ttaaatataataatcgtctgtgtaatttggtccaattttgattttcgtccatgtaaaaaaaaactttgaaatacatc 34985177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 41443171 - 41443075
Alignment:
Q  9 tgttttgatttttgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaatatcaatgcccttt 105  Q
    ||||||||||||||| | |  |||||||||||||||||| |||   ||||  || ||| |||||||||||| | |||||||||||||| ||| ||||    
T  41443171 tgttttgatttttgtgcaaatacctaaatttctttgtataatttagttgtccaaaaggttgtcacaagaaatgattgttcaaatatcattgctcttt 41443075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 53841061 - 53841017
Alignment:
Q  218 ttttaattttcgtccctgtaaaaaatactttgaaatgcatccctg 262  Q
    |||| ||||| |||||||||||||| |||||||||||||||||||    
T  53841061 ttttgattttagtccctgtaaaaaaaactttgaaatgcatccctg 53841017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 48045698 - 48045639
Alignment:
Q  183 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||| |||| ||||||||||||||  ||||| ||| ||||||| ||||||||    
T  48045698 ttaaatatgataatcgttcctgtaatttggtctcgttttgattgtcgtccccgtaaaaaa 48045639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 1984847 - 1984908
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||  | ||||||||||||||||| ||  |||| |||||||||| |||||||||    
T  1984847 gcttaaatatgcaattcgtccctgtaatttgggcccattttgattttcgtccttgtaaaaaa 1984908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 3990887 - 3990842
Alignment:
Q  197 cgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||||| | | |||| ||||||||||||||||||||    
T  3990887 cgtccctgtaatttgggctaattttgattttcgtccctgtaaaaaa 3990842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 4494214 - 4494133
Alignment:
Q  12 tttgatttttgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaata 93  Q
    ||||||||||||  ||| |||||||||||||||||| ||| | ||||  || | | ||||| |||||| |||||||||||||    
T  4494214 tttgatttttgtgtcactacctaaatttctttgtataatttggttgtccaacaagttgtcataagaaatggttgttcaaata 4494133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 8482619 - 8482558
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| | |||||||||||||||  | ||||| | |||| |||||||||||||    
T  8482619 gcttaaatatgatattagtccctgtaatttgggtcggttttgaatttcctccctgtaaaaaa 8482558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 9692819 - 9692900
Alignment:
Q  12 tttgatttttgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaata 93  Q
    ||||||||||||  |||  ||||| ||||||||||| |||   |||| ||| ||| |||||||||||| |||||||||||||    
T  9692819 tttgatttttgtgtcactgcctaactttctttgtataatttagttgtctaaaaggttgtcacaagaaatggttgttcaaata 9692900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 23143579 - 23143518
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||  | |||||||||||||||  | ||||| | ||||||||||||||||||    
T  23143579 gcttaaatatgattttagtccctgtaatttgggtcggttttgaatttcgtccctgtaaaaaa 23143518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 25166804 - 25166743
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||  |  |||||||||||||||| | | |||| ||||||||||||||||||||    
T  25166804 gcttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgtaaaaaa 25166743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 39099413 - 39099446
Alignment:
Q  14 tgatttttgtaccaccacctaaatttctttgtat 47  Q
    ||||||||||||||| ||||||||||||||||||    
T  39099413 tgatttttgtaccactacctaaatttctttgtat 39099446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 41354836 - 41354775
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| |||| | |||| |||||||||||||| |||   ||||||||||||||    
T  41354836 gcttaaatatgataatcgttcatgtactttggtccagttttgattcatgtccctgtaaaaaa 41354775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 53428023 - 53427978
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattt 226  Q
    |||||||||||||| ||||  |||||||||||||||||||| ||||    
T  53428023 gcttaaatatgataatcgtttctgtaatttggtccagttttgattt 53427978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 54600150 - 54600195
Alignment:
Q  197 cgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||||| | | |||| ||||||||||||||||||||    
T  54600150 cgtccctgtaatttgggctaattttgattttcgtccctgtaaaaaa 54600195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 25165900 - 25165960
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaa 241  Q
    |||||||||||  |  |||||||||||||||| | | |||| |||||||||||||||||||    
T  25165900 gcttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgtaaaaa 25165960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 39841323 - 39841264
Alignment:
Q  183 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  39841323 ttaaatatgataatcgtccctgtaatttggtccagttttgattttcgtccctgtaaaaaa 39841264  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 181 - 261
Target Start/End: Original strand, 30856098 - 30856178
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaatactttgaaatgcatccct 261  Q
    |||||||| ||||| |||||| | |||||||| |||||||||||||||||| |||||||||| |||||||||| |||||||    
T  30856098 gcttaaatttgataatcgtccttataatttgggccagttttaattttcgtcactgtaaaaaaaactttgaaatacatccct 30856178  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 46047337 - 46047276
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| |||||| |||||||| ||||| |||||||||||||||||||||||||    
T  46047337 gcttaaatatgataatcgtccatgtaatttagtccaattttaattttcgtccctgtaaaaaa 46047276  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 7919039 - 7918958
Alignment:
Q  12 tttgatttttgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaata 93  Q
    |||||||||||| |||| |||||||||||||||||| ||| | |||| ||| | | |||||||||||| |||||||||||||    
T  7919039 tttgatttttgtgccactacctaaatttctttgtataatttggttgtctaacaagttgtcacaagaaagggttgttcaaata 7918958  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 21081101 - 21081040
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| | |||||||||||||||  ||||||||| ||||||||||||||||||    
T  21081101 gcttaaatatgatattagtccctgtaatttgggtcagttttaaatttcgtccctgtaaaaaa 21081040  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 46728774 - 46728691
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctg--taaaaaatactttgaaatgcatccctg 262  Q
    |||||||||||||| ||||| ||||| |||||  ||||||| |||||||||||||  ||||||| |||||||||| ||||||||    
T  46728774 gcttaaatatgataatcgtcactgtagtttgggtcagttttgattttcgtccctgtataaaaaaaactttgaaatacatccctg 46728691  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 1743209 - 1743268
Alignment:
Q  183 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||| |||||||| |||||| || ||||||| ||||||||||||||||||||    
T  1743209 ttaaatatgataatcgtccctataatttagttcagttttgattttcgtccctgtaaaaaa 1743268  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 39025394 - 39025459
Alignment:
Q  199 tccctgtaatttggtccagttttaattttcgtccctgt--aaaaaatactttgaaatgcatccctg 262  Q
    |||||||||||||||||| |||| ||||||||||||||  |||||| |||||||||| ||||||||    
T  39025394 tccctgtaatttggtccaattttgattttcgtccctgtaaaaaaaaaactttgaaatacatccctg 39025459  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 171498 - 171437
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| ||||| ||||||||||   ||||||| ||||||||||||||||||||    
T  171498 gcttaaatatgataatcgtctctgtaatttgagtcagttttgattttcgtccctgtaaaaaa 171437  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 262
Target Start/End: Complemental strand, 29374012 - 29373932
Alignment:
Q  184 taaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt--aaaaaatactttgaaatgcatccctg 262  Q
    ||||||||||| |||||| ||||||||||  ||||||| ||||||||| ||||  |||||| |||||||||| ||||||||    
T  29374012 taaatatgataatcgtccttgtaatttggatcagttttgattttcgtcactgtaaaaaaaaaactttgaaatacatccctg 29373932  T

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Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 30856955 - 30856894
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| || ||||| |||||||||| |||||| |||||||| |||||||||||    
T  30856955 gcttaaatatgataatcttccctataatttggtctagttttgattttcgttcctgtaaaaaa 30856894  T

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Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 41147336 - 41147275
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| |||||| |||||||||| |||||||| |||||||| || ||||||||    
T  41147336 gcttaaatatgataatcgtccttgtaatttgggccagttttgattttcgttccggtaaaaaa 41147275  T

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Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 51465752 - 51465813
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| | |||||||||||||||  ||||||| ||||||||||||| ||||||    
T  51465752 gcttaaatatgataatagtccctgtaatttggatcagttttgattttcgtccctgcaaaaaa 51465813  T

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Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 1744078 - 1743995
Alignment:
Q  180 agcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaa--aaatactttgaaatgcatccct 261  Q
    ||||||||||||||| || ||  |||||||||| |||||||| |||||||| ||||||||  ||| |||||||||| |||||||    
T  1744078 agcttaaatatgataatcatctatgtaatttgggccagttttgattttcgttcctgtaaaagaaaaactttgaaatacatccct 1743995  T

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Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 43380595 - 43380516
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgta--aaaaatactttgaaatgcatc 258  Q
    |||||||||||||| |||||||||||||||||  ||||||| ||||||||| ||| |  ||||| |||||||||| ||||    
T  43380595 gcttaaatatgataatcgtccctgtaatttggatcagttttgattttcgtctctgcaacaaaaaaactttgaaatacatc 43380516  T

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Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 51466521 - 51466437
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaa---aaaatactttgaaatgcatccctg 262  Q
    |||||||||||||| |||||| | |||||| |  ||||||| ||||||||||||||||   |||| |||||||||| ||||||||    
T  51466521 gcttaaatatgataatcgtccttataatttaggtcagttttgattttcgtccctgtaaaaaaaaaaactttgaaatacatccctg 51466437  T

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Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 5771721 - 5771640
Alignment:
Q  12 tttgatttttgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaata 93  Q
    |||||||||| | |||| |||||||||||||||||| |||   |||| ||| ||| |||||||||||| | |||||||||||    
T  5771721 tttgatttttctgccactacctaaatttctttgtataatttagttgtctaaaaggttgtcacaagaaatgattgttcaaata 5771640  T

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Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 16878746 - 16878807
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||  ||||||||||||||||  || ||||| ||||||||||| ||||||||    
T  16878746 gcttaaatatgattttcgtccctgtaatttgaacccgttttgattttcgtcccagtaaaaaa 16878807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 19439330 - 19439269
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||  |||| | |||||||||| || ||||| ||||||||||||||||||||    
T  19439330 gcttaaatatgattttcgttcttgtaatttgggcccgttttgattttcgtccctgtaaaaaa 19439269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 43379770 - 43379831
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    ||||||||||||||  ||||||||||||||    ||||||| ||||||||||||||||||||    
T  43379770 gcttaaatatgataaacgtccctgtaatttttgacagttttgattttcgtccctgtaaaaaa 43379831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 21080376 - 21080437
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||  |||||||||||||||||  | ||||| |||||| ||| |||||||||    
T  21080376 gcttaaatatgattttcgtccctgtaatttgggtccgttttgattttcatccttgtaaaaaa 21080437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 26252864 - 26252804
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| | |||| |||||||||   ||||||| ||||||||||||||||||||    
T  26252864 gcttaaatatgataattgtcc-tgtaatttgagtcagttttgattttcgtccctgtaaaaaa 26252804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 37910793 - 37910732
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||| ||  ||||||| |||||||||  | ||||| ||||||||||||||||||||    
T  37910793 gcttaaatatcattttcgtccccgtaatttggatccgttttgattttcgtccctgtaaaaaa 37910732  T

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Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 39840511 - 39840568
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaa 238  Q
    |||||||||||||| || ||| |||||||| |  ||||||| ||||||||||||||||    
T  39840511 gcttaaatatgataatcatccatgtaattttggtcagttttgattttcgtccctgtaa 39840568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 39958001 - 39958062
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| | |||||||||||||||  | ||||| | |||||||||| |||||||    
T  39958001 gcttaaatatgatattagtccctgtaatttgggtcggttttgaatttcgtccctataaaaaa 39958062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 39958666 - 39958605
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||| ||  ||||| ||||||||||| || ||||| |||||||||| |||||||||    
T  39958666 gcttaaatatcattttcgtctctgtaatttgggcccgttttgattttcgtccttgtaaaaaa 39958605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 46727929 - 46727990
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| | ||| ||| |||||||  ||||||| ||||||||||||||| ||||    
T  46727929 gcttaaatatgataatagtcactggaatttgggacagttttgattttcgtccctgtataaaa 46727990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 50126505 - 50126444
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| | |||| ||||||||||  | ||||| | ||||||||||||||||||    
T  50126505 gcttaaatatgatattagtccatgtaatttgggtcggttttgaatttcgtccctgtaaaaaa 50126444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 23551686 - 23551734
Alignment:
Q  196 tcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaata 244  Q
    ||||||||||||||||| |  ||||| |||||||||| |||||||||||    
T  23551686 tcgtccctgtaatttggacgcgttttgattttcgtccttgtaaaaaata 23551734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 30984189 - 30984145
Alignment:
Q  198 gtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    ||||||||||||||| |  ||||| ||||||||||||||||||||    
T  30984189 gtccctgtaatttggacgcgttttgattttcgtccctgtaaaaaa 30984145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 33057491 - 33057567
Alignment:
Q  30 acctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaatatcaatgcccttta 106  Q
    |||||||||||||||||||||| | |||| ||||||| |||||||||||||| ||||||||||| || |||||||||    
T  33057491 acctaaatttctttgtattatttggttgtctaataggttgtcacaagaaaagattgttcaaataacattgcccttta 33057567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 26828766 - 26828843
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaatactttgaaatgcatcc 259  Q
    |||||||||||||| | |||||||||||||||||||||||| |||||| ||||||||||||| | |||||||| |||||    
T  26828766 gcttaaatatgataattgtccctgtaatttggtccagttttgattttcttccctgtaaaaaa-aatttgaaatacatcc 26828843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 183 - 262
Target Start/End: Original strand, 14419392 - 14419473
Alignment:
Q  183 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa--tactttgaaatgcatccctg 262  Q
    |||||||||||| ||||||||||| |||||  ||||||| ||||||||||||||||||||   |||||||||| ||||||||    
T  14419392 ttaaatatgataatcgtccctgtattttggggcagttttgattttcgtccctgtaaaaaaagaactttgaaatacatccctg 14419473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 6822605 - 6822666
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| | ||||||||||||||||| ||||||  |||||||||||||||||||    
T  6822605 gcttaaatatgataattgtccctgtaatttggtcaagttttggttttcgtccctgtaaaaaa 6822666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 21985636 - 21985575
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||  ||||||||||||||||| || ||||| ||||||||||||||||||||    
T  21985636 gcttaaatatgattttcgtccctgtaatttggacccgttttgattttcgtccctgtaaaaaa 21985575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 41345489 - 41345436
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccct 234  Q
    |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||    
T  41345489 gcttaaatatgataatcgtccctataatttggtccagttttgattttcgtccct 41345436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 41567982 - 41567920
Alignment:
Q  180 agcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    ||||||||||||||  || |||||||||||||| || ||||| ||||||||||||||||||||    
T  41567982 agcttaaatatgattttcatccctgtaatttgggcccgttttgattttcgtccctgtaaaaaa 41567920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 11337769 - 11337708
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||| ||  ||||||||||||||||| || ||||| ||||||||||||||||||||    
T  11337769 gcttaaatatcattttcgtccctgtaatttgggcccgttttgattttcgtccctgtaaaaaa 11337708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 13152686 - 13152771
Alignment:
Q  11 ttttgatttttgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaatatca 96  Q
    ||||||||||||| |||| |||||||||||||||||| |||   ||||  || ||| ||||| |||||| ||||||||||||||||    
T  13152686 ttttgatttttgtgccactacctaaatttctttgtataatttagttgtccaaaaggttgtcataagaaatggttgttcaaatatca 13152771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 17995850 - 17995911
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||  |||||||||||||||||  || |||| ||||||||||||||||||||    
T  17995850 gcttaaatatgattttcgtccctgtaatttgggtcaattttgattttcgtccctgtaaaaaa 17995911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 37796598 - 37796651
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccct 234  Q
    |||||||||||||| |||||||||||||||||  ||||||| ||||||||||||    
T  37796598 gcttaaatatgataatcgtccctgtaatttgggtcagttttgattttcgtccct 37796651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 45420041 - 45419957
Alignment:
Q  9 tgttttgatttttgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaata 93  Q
    ||||||||||||||| |||| |||||||||||||||||| |||   ||||  || ||| ||||| |||||| |||||||||||||    
T  45420041 tgttttgatttttgtgccactacctaaatttctttgtataatttagttgtccaaaaggttgtcaaaagaaatggttgttcaaata 45419957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 21984874 - 21984920
Alignment:
Q  196 tcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    ||||||||||||||||| || ||||| ||||||||||||||||||||    
T  21984874 tcgtccctgtaatttgggcccgttttgattttcgtccctgtaaaaaa 21984920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 262
Target Start/End: Original strand, 40193861 - 40193943
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt-aaaaaatactttgaaatgcatccctg 262  Q
    |||||||||||||| ||||| |||||||||||  || |||| |||||||| ||||| |||||| |||||||||| ||| ||||    
T  40193861 gcttaaatatgataatcgtcgctgtaatttgggtcaattttgattttcgttcctgtaaaaaaaaactttgaaatacattcctg 40193943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 789299 - 789360
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||  |||||||||||||||||  ||||||| |||||| ||||| |||||||    
T  789299 gcttaaatatgattttcgtccctgtaatttgggtcagttttgattttcatccctctaaaaaa 789360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 26829674 - 26829629
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattt 226  Q
    |||||||||||||| ||||||||||||||| |||||||||| ||||    
T  26829674 gcttaaatatgataatcgtccctgtaatttagtccagttttgattt 26829629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 32497001 - 32497062
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| | || ||||||||||||  ||||||| |||||| |||||||||||||    
T  32497001 gcttaaatatgataattgttcctgtaatttgggtcagttttgattttcatccctgtaaaaaa 32497062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 34978390 - 34978483
Alignment:
Q  12 tttgatttttgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaatatcaatgcccttt 105  Q
    |||| ||||||| |||| |||||||||||||||||| |||   ||||  || ||| |||||||||||| ||||||| |||||||| ||| ||||    
T  34978390 tttgttttttgtgccactacctaaatttctttgtataatttagttgtccaaaaggttgtcacaagaaatggttgttaaaatatcattgctcttt 34978483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 42276530 - 42276591
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||  ||||| ||||||||| | || ||||| ||||||||||||||||||||    
T  42276530 gcttaaatatgattttcgtctctgtaatttagacccgttttgattttcgtccctgtaaaaaa 42276591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 47723536 - 47723476
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||  |||||||| |||||||| |||||||| |||||||| |||||||||||    
T  47723536 gcttaaatatgattttcgtccctataatttggaccagttttgattttcgt-cctgtaaaaaa 47723476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 46196794 - 46196746
Alignment:
Q  183 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtc 231  Q
    |||||||||||| |||||||||||||||||||||  ||| |||||||||    
T  46196794 ttaaatatgataatcgtccctgtaatttggtccaaattttattttcgtc 46196746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 7945334 - 7945395
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||  | ||||||||||||||||| |  ||||| |||||||||| |||||||||    
T  7945334 gcttaaatatgcaattcgtccctgtaatttggacacgttttgattttcgtccttgtaaaaaa 7945395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 23966316 - 23966377
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||  |  |||||||||||||||| | | |||| ||||||||||||||||||||    
T  23966316 gcttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgtaaaaaa 23966377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 26585475 - 26585536
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| | ||||||||||||| |  | ||||| | ||||||||||||||||||    
T  26585475 gcttaaatatgatattagtccctgtaatttaggtcggttttgaatttcgtccctgtaaaaaa 26585536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 28762976 - 28763037
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| | |||||||||||||||    ||||| | ||||||||||||||||||    
T  28762976 gcttaaatatgatattagtccctgtaatttgggttggttttgaatttcgtccctgtaaaaaa 28763037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 34458908 - 34458851
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaa 238  Q
    |||||||||||||| || || || ||||||||| || |||| ||||||||||||||||    
T  34458908 gcttaaatatgataatcatctctataatttggttcaattttgattttcgtccctgtaa 34458851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 35088374 - 35088435
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||  |||||  | ||||||||  ||||||| ||||||||||||||||||||    
T  35088374 gcttaaatatgattttcgtcattataatttggatcagttttgattttcgtccctgtaaaaaa 35088435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 16779849 - 16779769
Alignment:
Q  183 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaa-aaaatactttgaaatgcatccctg 262  Q
    |||||||||||| | |||| ||||||||||  | ||||| | |||||||||||||| |||| |||||||| | ||||||||    
T  16779849 ttaaatatgatattagtccttgtaatttgggtcggttttgaatttcgtccctgtaaaaaaaaactttgaattacatccctg 16779769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 544343 - 544422
Alignment:
Q  184 taaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt--aaaaaatactttgaaatgcatccct 261  Q
    ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||  |||||| |||||||||| |||||||    
T  544343 taaatatgataatcgtctctgtaatttggtccagttttgattttcgtccctgtaaaaaaaaaactttgaaatacatccct 544422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 187 - 261
Target Start/End: Original strand, 3184691 - 3184765
Alignment:
Q  187 atatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaatactttgaaatgcatccct 261  Q
    |||||||| ||||||||||||||||| | |||||| |||||||||||||||||||| | |||||||| |||||||    
T  3184691 atatgataatcgtccctgtaatttggacaagttttgattttcgtccctgtaaaaaaaaatttgaaatacatccct 3184765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 1175161 - 1175100
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||  ||||||||||||||||| || ||||| |||||| |||||||||||||    
T  1175161 gcttaaatatgattttcgtccctgtaatttggacccgttttgattttcatccctgtaaaaaa 1175100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 476922 - 476983
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||| ||  | ||||||||||||||| || ||||| ||||||||||||||||||||    
T  476922 gcttaaatatcatttttgtccctgtaatttgggcccgttttgattttcgtccctgtaaaaaa 476983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 477708 - 477647
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||| | |||||||||||||||  | ||||| | ||||||||||||||||||    
T  477708 gcttaaatatgatattagtccctgtaatttgggtcggttttgaatttcgtccctgtaaaaaa 477647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 8645420 - 8645486
Alignment:
Q  30 acctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaatatca 96  Q
    |||||||||||||||||| |||   ||||  || ||| |||||||||||| ||||||||||||||||    
T  8645420 acctaaatttctttgtataatttagttgtccaaaaggttgtcacaagaaatggttgttcaaatatca 8645486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 9699198 - 9699153
Alignment:
Q  197 cgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||||| | | |||| ||||||||||||||||||||    
T  9699198 cgtccctgtaatttgggctaattttgattttcgtccctgtaaaaaa 9699153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 24051256 - 24051317
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||  |  |||||||||||||||| | | |||| ||||||||||||||||||||    
T  24051256 gcttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgtaaaaaa 24051317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 29979283 - 29979222
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||  |  |||||||||||||||| | | |||| ||||||||||||||||||||    
T  29979283 gcttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgtaaaaaa 29979222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 31170213 - 31170274
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    ||||||||| ||||   |||||||||||||||  | ||||||| ||||||||||||||||||    
T  31170213 gcttaaataagatatcagtccctgtaatttggatcggttttaaatttcgtccctgtaaaaaa 31170274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 32403976 - 32404037
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||  | ||||||||||||||| ||| |||| ||||||||||| ||| ||||    
T  32403976 gcttaaatatgatttttgtccctgtaatttggaccacttttgattttcgtccccgtagaaaa 32404037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 2812554 - 2812494
Alignment:
Q  182 cttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    ||||||||||||  |||||||| |||||| |  ||||||| |||||||||| |||||||||    
T  2812554 cttaaatatgattttcgtccctataatttagatcagttttgattttcgtccttgtaaaaaa 2812494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0785 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0785
Description:

Target: scaffold0785; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 1630 - 1568
Alignment:
Q  180 agcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    ||||||||||||||| | |||||||||||||||  | ||||| | |||||||| |||||||||    
T  1630 agcttaaatatgatattagtccctgtaatttggatcggttttgaatttcgtccgtgtaaaaaa 1568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 262
Target Start/End: Original strand, 135484 - 135566
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaata-ctttgaaatgcatccctg 262  Q
    |||||||||||||| | |||||||||||||||  | ||||| | ||| |||||||||||||| | ||||||| | ||||||||    
T  135484 gcttaaatatgatattagtccctgtaatttgggtcggttttgaattttgtccctgtaaaaaaaatctttgaattacatccctg 135566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 28284 - 28345
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||| ||  ||||||| |||||||||  | ||||| ||||||||||||||||||||    
T  28284 gcttaaatatcattttcgtccccgtaatttggatccgttttgattttcgtccctgtaaaaaa 28345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 10307 - 10368
Alignment:
Q  181 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||  |  |||||||||||||||| | | |||| ||||||||||||||||||||    
T  10307 gcttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgtaaaaaa 10368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 11180 - 11135
Alignment:
Q  197 cgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 242  Q
    |||||||||||||||| | | |||| ||||||||||||||||||||    
T  11180 cgtccctgtaatttgggcgaattttgattttcgtccctgtaaaaaa 11135  T

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