View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5130_low_6 (Length: 401)
Name: NF5130_low_6
Description: NF5130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5130_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 33 - 382
Target Start/End: Complemental strand, 14745292 - 14744941
Alignment:
| Q |
33 |
tttacagtgaaaggtatatctgaattaaatcaaaataaaaaatgatggttcaagagttttgctttctcatccaatatg----gtaactgcagtctagtct |
128 |
Q |
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| T |
14745292 |
tttacagtgaaaggtatatctgaattaaatcaaaataaaaaatgatggttcaagagttttgctttctcatgcaatatgcatggtaactgtagtctagtct |
14745193 |
T |
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| Q |
129 |
acctcacttgaaaagcaagccattttggaggttgcccctaagatagcacaagttctgcaccaagacactgataatattgtggaaacttcacttgaggcac |
228 |
Q |
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| T |
14745192 |
acctcacttgaaaagcaagccattttggaggttgcccctaagatagcacaacttctgcaccaagacactgataatattgtggaaacttcacttgaggcac |
14745093 |
T |
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| Q |
229 |
aacaacaaacagccatccaagcaaattttgtcagataaatcaagcacatatatttgcacttcacagtgtataatgttacaaatgatattcgagcacaggg |
328 |
Q |
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| T |
14745092 |
aacaacaaacagccatccaaggaaattttgtcagataaatcaagcac--atatttgcacttcacaatgtataatgttacaaatgatattcgagcacaggg |
14744995 |
T |
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| Q |
329 |
atatcaatcatgagaagaataatgaacaaagcgccactgatcccaacgataata |
382 |
Q |
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| T |
14744994 |
atatcaatcatgagaagaataatgaacaaagcgccactgatcccaacggtaata |
14744941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 148 - 375
Target Start/End: Original strand, 17582163 - 17582388
Alignment:
| Q |
148 |
ccattttggaggttgcccctaagatagcacaagttctgcaccaagacactgataatattgtggaaacttcacttgaggcacaacaacaaacagccatcca |
247 |
Q |
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| T |
17582163 |
ccattttggaggttgcccctaagatagcacaagttctgcaccaagacactgataatattgtggaaacttcacttgaggcacaacaacaaacagccatcca |
17582262 |
T |
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| Q |
248 |
agcaaattttgtcagataaatcaagcacatatatttgcacttcacagtgtataatgttacaaatgatattcgagcacagggatatcaatcatgagaagaa |
347 |
Q |
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| T |
17582263 |
agcaaattttgtcagataaatcaagcac--atatttgcacttcacaatgtataatgttacaaatgatattcgagcacagggatatcaatcatgagaagaa |
17582360 |
T |
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| Q |
348 |
taatgaacaaagcgccactgatcccaac |
375 |
Q |
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| T |
17582361 |
taatgaacaaagcgccactgatcccaac |
17582388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 17582043 - 17582161
Alignment:
| Q |
1 |
ctgttacgattgactgtcggtatnnnnnnntgtttacagtgaaaggtatatctgaattaaatcaaaataaaaaatgatggttcaagagttttgctttctc |
100 |
Q |
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|||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
17582043 |
ctgttacgattgaccgtcgttataaaaaaatgtttacagtgaaaggtatatctgaattaaatcaaaataaaaaatgatagttcaagagttttgctttctc |
17582142 |
T |
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| Q |
101 |
atccaatatggtaactgca |
119 |
Q |
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| T |
17582143 |
atccaatatggtaactgca |
17582161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 65
Target Start/End: Original strand, 53896417 - 53896445
Alignment:
| Q |
37 |
cagtgaaaggtatatctgaattaaatcaa |
65 |
Q |
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| T |
53896417 |
cagtgaaaggtatatctgaattaaatcaa |
53896445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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