View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5130_low_7 (Length: 357)

Name: NF5130_low_7
Description: NF5130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5130_low_7
NF5130_low_7
[»] chr2 (26 HSPs)
chr2 (144-341)||(3653553-3653750)
chr2 (22-88)||(13896676-13896742)
chr2 (22-88)||(14037293-14037359)
chr2 (21-94)||(33597538-33597611)
chr2 (24-89)||(7474197-7474262)
chr2 (24-89)||(37640111-37640176)
chr2 (24-91)||(17481458-17481525)
chr2 (24-91)||(32496538-32496605)
chr2 (87-125)||(3653769-3653807)
chr2 (24-89)||(35457519-35457584)
chr2 (24-91)||(2442578-2442645)
chr2 (24-91)||(44003340-44003407)
chr2 (24-61)||(14380774-14380811)
chr2 (24-61)||(31686282-31686319)
chr2 (24-61)||(31686312-31686349)
chr2 (24-61)||(31787347-31787384)
chr2 (24-61)||(40255177-40255214)
chr2 (24-61)||(40255207-40255244)
chr2 (24-61)||(44282842-44282879)
chr2 (24-61)||(44282872-44282909)
chr2 (21-61)||(14380786-14380826)
chr2 (21-61)||(31686297-31686337)
chr2 (21-61)||(31787329-31787369)
chr2 (21-61)||(40255189-40255229)
chr2 (21-93)||(43341605-43341677)
chr2 (21-61)||(44282854-44282894)
[»] chr5 (19 HSPs)
chr5 (24-93)||(33233109-33233178)
chr5 (24-88)||(27737929-27737993)
chr5 (23-93)||(2526967-2527037)
chr5 (24-89)||(41039491-41039556)
chr5 (21-86)||(37046254-37046319)
chr5 (24-87)||(31906117-31906180)
chr5 (24-94)||(19357127-19357197)
chr5 (24-89)||(41741576-41741641)
chr5 (21-89)||(4295622-4295690)
chr5 (21-87)||(33386819-33386885)
chr5 (24-61)||(3260299-3260336)
chr5 (24-61)||(3260329-3260366)
chr5 (24-61)||(29541813-29541850)
chr5 (24-61)||(33115319-33115356)
chr5 (24-61)||(42664044-42664081)
chr5 (24-61)||(42664074-42664111)
chr5 (21-61)||(3260314-3260354)
chr5 (21-61)||(29541798-29541838)
chr5 (21-61)||(42664056-42664096)
[»] scaffold0808 (1 HSPs)
scaffold0808 (24-88)||(4773-4837)
[»] chr7 (16 HSPs)
chr7 (21-89)||(12910590-12910658)
chr7 (39-89)||(15000552-15000602)
chr7 (24-86)||(41065439-41065501)
chr7 (24-65)||(12910578-12910619)
chr7 (21-94)||(30139161-30139234)
chr7 (24-88)||(25472095-25472159)
chr7 (24-85)||(1999596-1999657)
chr7 (24-61)||(25340969-25341006)
chr7 (24-61)||(31011958-31011995)
chr7 (24-61)||(31011988-31012025)
chr7 (21-86)||(37371355-37371420)
chr7 (21-61)||(25340954-25340994)
chr7 (24-60)||(30139210-30139246)
chr7 (21-61)||(31011973-31012013)
chr7 (39-87)||(32451450-32451498)
chr7 (39-91)||(43664197-43664249)
[»] chr1 (37 HSPs)
chr1 (21-89)||(41512839-41512907)
chr1 (24-89)||(47655054-47655119)
chr1 (23-86)||(27576832-27576895)
chr1 (21-91)||(50031526-50031596)
chr1 (21-89)||(7385915-7385983)
chr1 (24-91)||(24076133-24076200)
chr1 (24-61)||(5270998-5271035)
chr1 (21-86)||(11829706-11829771)
chr1 (21-61)||(5270968-5271008)
chr1 (21-61)||(5270983-5271023)
chr1 (21-61)||(7592683-7592723)
chr1 (24-86)||(27068494-27068556)
chr1 (39-89)||(46408140-46408189)
chr1 (24-61)||(7592698-7592735)
chr1 (24-61)||(11829694-11829731)
chr1 (24-61)||(15353857-15353894)
chr1 (24-61)||(26822004-26822041)
chr1 (24-61)||(26822034-26822071)
chr1 (24-61)||(26999753-26999790)
chr1 (24-61)||(26999783-26999820)
chr1 (24-61)||(36495842-36495879)
chr1 (24-61)||(36495872-36495909)
chr1 (24-61)||(38627886-38627923)
chr1 (24-61)||(38627916-38627953)
chr1 (24-61)||(41512827-41512864)
chr1 (24-61)||(50978288-50978325)
chr1 (24-61)||(50978318-50978355)
chr1 (24-61)||(51487837-51487874)
chr1 (24-61)||(51487867-51487904)
chr1 (21-61)||(15353839-15353879)
chr1 (21-61)||(26822016-26822056)
chr1 (21-61)||(26999768-26999808)
chr1 (144-180)||(33752669-33752705)
chr1 (21-61)||(36495857-36495897)
chr1 (21-61)||(38627898-38627938)
chr1 (21-61)||(50978303-50978343)
chr1 (21-61)||(51487852-51487892)
[»] chr4 (24 HSPs)
chr4 (22-89)||(56561178-56561245)
chr4 (24-93)||(38768488-38768557)
chr4 (24-89)||(22605702-22605767)
chr4 (36-89)||(39733522-39733575)
chr4 (21-90)||(51677657-51677726)
chr4 (21-89)||(26459674-26459742)
chr4 (21-89)||(28963201-28963269)
chr4 (24-89)||(48407588-48407652)
chr4 (21-61)||(24247226-24247266)
chr4 (24-91)||(53662991-53663058)
chr4 (24-61)||(24035563-24035600)
chr4 (24-61)||(24035593-24035630)
chr4 (24-61)||(24247244-24247281)
chr4 (24-61)||(28963244-28963281)
chr4 (24-61)||(31430887-31430924)
chr4 (24-61)||(39382381-39382418)
chr4 (24-61)||(39382411-39382448)
chr4 (24-61)||(49128325-49128362)
chr4 (24-61)||(49128355-49128392)
chr4 (24-61)||(51677645-51677682)
chr4 (21-61)||(24035578-24035618)
chr4 (21-61)||(31430902-31430942)
chr4 (21-61)||(39382396-39382436)
chr4 (21-61)||(49128337-49128377)
[»] chr3 (30 HSPs)
chr3 (27-90)||(31813893-31813956)
chr3 (24-88)||(48181744-48181808)
chr3 (21-89)||(51230380-51230448)
chr3 (24-91)||(30811387-30811454)
chr3 (24-91)||(39252160-39252227)
chr3 (24-89)||(33025138-33025203)
chr3 (21-90)||(48253835-48253904)
chr3 (24-61)||(51124762-51124799)
chr3 (21-61)||(51124732-51124772)
chr3 (21-61)||(51124747-51124787)
chr3 (24-86)||(50392193-50392255)
chr3 (39-89)||(54963157-54963207)
chr3 (24-61)||(1528175-1528212)
chr3 (24-61)||(1528205-1528242)
chr3 (24-65)||(30811372-30811413)
chr3 (24-65)||(33025177-33025218)
chr3 (24-61)||(38469850-38469887)
chr3 (24-61)||(38469880-38469917)
chr3 (24-61)||(47140712-47140749)
chr3 (24-61)||(47140742-47140779)
chr3 (24-61)||(47697389-47697426)
chr3 (24-61)||(52693209-52693246)
chr3 (24-61)||(52693239-52693276)
chr3 (21-61)||(1528187-1528227)
chr3 (24-88)||(11264391-11264455)
chr3 (21-61)||(38469862-38469902)
chr3 (24-88)||(45488443-45488507)
chr3 (21-61)||(47140727-47140767)
chr3 (21-61)||(47697371-47697411)
chr3 (21-61)||(52693221-52693261)
[»] chr6 (8 HSPs)
chr6 (39-89)||(21515084-21515134)
chr6 (24-89)||(10683847-10683912)
chr6 (23-86)||(4147493-4147556)
chr6 (24-91)||(31745346-31745413)
chr6 (24-65)||(10683832-10683873)
chr6 (24-61)||(30019887-30019924)
chr6 (24-61)||(30019917-30019954)
chr6 (21-61)||(30019899-30019939)
[»] chr8 (24 HSPs)
chr8 (21-85)||(44240786-44240850)
chr8 (24-91)||(45275749-45275816)
chr8 (21-91)||(36820895-36820965)
chr8 (21-86)||(26575918-26575983)
chr8 (21-91)||(8417350-8417420)
chr8 (24-86)||(35801683-35801745)
chr8 (24-61)||(194053-194090)
chr8 (24-61)||(194083-194120)
chr8 (24-61)||(308920-308957)
chr8 (24-61)||(629381-629418)
chr8 (24-61)||(629411-629448)
chr8 (36-93)||(11071167-11071223)
chr8 (24-61)||(30211251-30211288)
chr8 (24-61)||(30211281-30211318)
chr8 (24-61)||(30982572-30982609)
chr8 (24-61)||(30982602-30982639)
chr8 (24-61)||(34773791-34773828)
chr8 (24-61)||(34773821-34773858)
chr8 (21-61)||(194065-194105)
chr8 (21-61)||(308902-308942)
chr8 (21-61)||(629393-629433)
chr8 (21-61)||(30211263-30211303)
chr8 (21-61)||(30982587-30982627)
chr8 (21-61)||(34773806-34773846)
[»] scaffold0097 (1 HSPs)
scaffold0097 (24-88)||(32404-32468)
[»] scaffold0068 (1 HSPs)
scaffold0068 (24-88)||(38388-38452)
[»] scaffold0006 (1 HSPs)
scaffold0006 (36-86)||(92249-92299)


Alignment Details
Target: chr2 (Bit Score: 158; Significance: 5e-84; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 144 - 341
Target Start/End: Complemental strand, 3653750 - 3653553
Alignment:
Q  144 caattttagttgtattgtgtttgattgcaaaattgttcctggataatgtaccaaggggcttcaacatgacagaacgatggaaaatagagagtcgcgagtt 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  3653750 caattttagttgtattgtgtttgattgcaaaattgttcctggataatgtaccaaggggcttcaacatgacagaatgatggaaaatagagaatcgcgagtt 3653651  T
Q  244 tgaatattctcatttcaacatatcaaataactatgcaactattgtttgaactatacttatgaaatgtgtctctaaaatcataatcgtataattttagt 341  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||  |||||||||||||||| |||||||| |||||| |||||||||||||||||    
T  3653650 tgaatattctcatttcaacatatcaaatatctatgcaactactattgaaactatacttatgaaacgtgtctctgaaatcagaatcgtataattttagt 3653553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 13896676 - 13896742
Alignment:
Q  22 agaatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacac 88  Q
    ||||||||||||  |||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  13896676 agaatcaattctatcagaatcaattctgtcagaatcaattctatctaaagctaaaccaaacacacac 13896742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 14037293 - 14037359
Alignment:
Q  22 agaatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacac 88  Q
    ||||||||||||  |||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  14037293 agaatcaattctatcagaatcaattctgtcagaatcaattctatctaaagctaaaccaaacacacac 14037359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 33597611 - 33597538
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacacttagtt 94  Q
    |||||||||||||  ||||||||||| |||||||||||||| |||  |||||| ||||||||||||||||||||    
T  33597611 cagaatcaattctatcagaatcaattttgtcagaatcaattctattcaaagctgaaccaaacacacacttagtt 33597538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 7474197 - 7474262
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacact 89  Q
    ||||||||||  || ||||||||||||||||||||||| |||  |||||| |||||||||||||||    
T  7474197 aatcaattctctcaaaatcaattctgtcagaatcaattctatccaaagctgaaccaaacacacact 7474262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 37640176 - 37640111
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacact 89  Q
    ||||||||||  |||||||||| |||||||||||||||||||  |||||| || ||||||||||||    
T  37640176 aatcaattctatcagaatcaatactgtcagaatcaattatatccaaagctgaatcaaacacacact 37640111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 17481458 - 17481525
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacactta 91  Q
    ||||||||||  || |||||||| ||||||||||||||||||  |||||| |||||||| ||||||||    
T  17481458 aatcaattctctcaaaatcaattatgtcagaatcaattatatccaaagctgaaccaaacgcacactta 17481525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 32496605 - 32496538
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacactta 91  Q
    ||||||||||  ||||||||||| | |||||||||||| |||  |||||| |||||||||||||||||    
T  32496605 aatcaattctatcagaatcaattatctcagaatcaattctatccaaagctgaaccaaacacacactta 32496538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 125
Target Start/End: Complemental strand, 3653807 - 3653769
Alignment:
Q  87 acttagttgttaaacactttaaaatttgtttgatcggtt 125  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  3653807 acttagttgttaaacactttaaaatgtgtttgatcggtt 3653769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 35457584 - 35457519
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacact 89  Q
    ||||||||||  |||| ||| |||| ||||||||||||||||  |||||| |||||||||||||||    
T  35457584 aatcaattctatcagagtcagttctatcagaatcaattatatcaaaagctgaaccaaacacacact 35457519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 2442645 - 2442578
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacactta 91  Q
    ||||||||||||   |||||||||||||| ||| ||||||||  |||| |||||||||||||| ||||    
T  2442645 aatcaattctgatgaaatcaattctgtcaaaattaattatatccaaaggtaaaccaaacacaccctta 2442578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 44003340 - 44003407
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacactta 91  Q
    ||||||||||  ||||||||||| ||||| ||||||||||||  |||||| |||||||| || |||||    
T  44003340 aatcaattctatcagaatcaattatgtcataatcaattatattcaaagctgaaccaaacgcatactta 44003407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 14380774 - 14380811
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  14380774 aatcaattctgtcagaatcaattctgtcaaaatcaatt 14380811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 31686319 - 31686282
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  31686319 aatcaattctttcagaatcaattctgtcagaatcaatt 31686282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 31686349 - 31686312
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  31686349 aatcaattctgtcagaatcaattctgtcaaaatcaatt 31686312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 31787347 - 31787384
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  31787347 aatcaattctttcagaatcaattctgtcagaatcaatt 31787384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 40255177 - 40255214
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  40255177 aatcaattctgtcagaatcaattctgtcaaaatcaatt 40255214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 40255207 - 40255244
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  40255207 aatcaattctttcagaatcaattctgtcagaatcaatt 40255244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 44282842 - 44282879
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  44282842 aatcaattctgtcagaatcaattctgtcaaaatcaatt 44282879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 44282872 - 44282909
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  44282872 aatcaattctttcagaatcaattctgtcagaatcaatt 44282909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 14380786 - 14380826
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  14380786 cagaatcaattctgtcaaaatcaattctttcagaatcaatt 14380826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 31686337 - 31686297
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  31686337 cagaatcaattctgtcaaaatcaattctttcagaatcaatt 31686297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 31787329 - 31787369
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  31787329 cagaatcaattctgccaaaatcaattctttcagaatcaatt 31787369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 40255189 - 40255229
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  40255189 cagaatcaattctgtcaaaatcaattctttcagaatcaatt 40255229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 43341677 - 43341605
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacacttagt 93  Q
    ||||||||||| |  ||||||||||||| | ||||||||||||||  |||| | ||||||||| | |||||||    
T  43341677 cagaatcaattttatcagaatcaattctattagaatcaattatattcaaagttgaaccaaacaaaaacttagt 43341605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 44282854 - 44282894
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  44282854 cagaatcaattctgtcaaaatcaattctttcagaatcaatt 44282894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 33233109 - 33233178
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacacttagt 93  Q
    ||||||||||  || ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  33233109 aatcaattctctcataatcaattctgtcagaatcaattctatctaaagctaaaccaaacacacacttagt 33233178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 27737993 - 27737929
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacac 88  Q
    ||||||||||| |||||| |||||| |||||||||||| ||| ||||||||||||||||||||||    
T  27737993 aatcaattctgtcagaattaattctatcagaatcaattctatctaaagctaaaccaaacacacac 27737929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 2526967 - 2527037
Alignment:
Q  23 gaatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacacttagt 93  Q
    |||||||||||  |||||||||||||||||||||||||| |||  |||||| |||||||||||| ||||||    
T  2526967 gaatcaattctatcagaatcaattctgtcagaatcaattctatccaaagctgaaccaaacacacccttagt 2527037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 41039556 - 41039491
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacact 89  Q
    |||||||| | ||| ||||||||||||||||||||||| ||| ||||||| |||||||||||||||    
T  41039556 aatcaattttaacaaaatcaattctgtcagaatcaattctatctaaagctgaaccaaacacacact 41039491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 37046254 - 37046319
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacac 86  Q
    ||||||||||||| |||||||||||| |||||||||||||| |||  |||| | ||||||||||||    
T  37046254 cagaatcaattctaacagaatcaattatgtcagaatcaattctattcaaagttgaaccaaacacac 37046319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 31906117 - 31906180
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacaca 87  Q
    |||||||| || || |||||||||| ||||||||||||||||  |||||| |||||||||||||    
T  31906117 aatcaattatgtcataatcaattctatcagaatcaattatatccaaagctgaaccaaacacaca 31906180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 19357127 - 19357197
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacacttagtt 94  Q
    |||||||| || ||||||||||||| | | ||||||||||||  |||||| |||||||||||||| |||||    
T  19357127 aatcaattatgtcagaatcaattctattaaaatcaattatatccaaagctgaaccaaacacacacatagtt 19357197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 41741641 - 41741576
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacact 89  Q
    ||||||||||  || |||||||||| ||||||||||||||||  |||||| ||| |||||||||||    
T  41741641 aatcaattctatcaaaatcaattctatcagaatcaattatatccaaagctgaacaaaacacacact 41741576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 4295622 - 4295690
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacact 89  Q
    |||||||||||||  || |||||||||||||| |||||||| ||| |||| || || ||||||||||||    
T  4295622 cagaatcaattctatcaaaatcaattctgtcaaaatcaattctatctaaaactgaatcaaacacacact 4295690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 33386885 - 33386819
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacaca 87  Q
    |||||||||||||  || |||||||||  |||||||||||| |||  |||||| |||||||||||||    
T  33386885 cagaatcaattctatcaaaatcaattcaatcagaatcaattctatccaaagctgaaccaaacacaca 33386819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 3260336 - 3260299
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  3260336 aatcaattctttcagaatcaattctgtcagaatcaatt 3260299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 3260366 - 3260329
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  3260366 aatcaattctgtcagaatcaattctgtcaaaatcaatt 3260329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 29541850 - 29541813
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  29541850 aatcaattctgtcagaatcaattctgtcaaaatcaatt 29541813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 33115319 - 33115356
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  33115319 aatcaattctttcagaatcaattctgtcagaatcaatt 33115356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 42664044 - 42664081
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  42664044 aatcaattctgtcagaatcaattctgtcaaaatcaatt 42664081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 42664074 - 42664111
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  42664074 aatcaattctttcagaatcaattctgtcagaatcaatt 42664111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 3260354 - 3260314
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  3260354 cagaatcaattctgtcaaaatcaattctttcagaatcaatt 3260314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 29541838 - 29541798
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  29541838 cagaatcaattctgtcaaaatcaattctttcagaatcaatt 29541798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 42664056 - 42664096
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  42664056 cagaatcaattctgtcaaaatcaattctttcagaatcaatt 42664096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0808 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0808
Description:

Target: scaffold0808; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 4773 - 4837
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacac 88  Q
    ||||||||||| ||||||||||||| ||||||||||||||||  |||||| ||||||||||||||    
T  4773 aatcaattctgtcagaatcaattctatcagaatcaattatatcgaaagctgaaccaaacacacac 4837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 12910590 - 12910658
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacact 89  Q
    |||||||||||||| ||||||||||| | |||||||||||| ||| ||||| |||||||||||||||||    
T  12910590 cagaatcaattctgtcagaatcaattatatcagaatcaattctatctaaagttaaaccaaacacacact 12910658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 15000552 - 15000602
Alignment:
Q  39 aatcaattctgtcagaatcaattatatataaagctaaaccaaacacacact 89  Q
    ||||||||||||||||||||||| |||  |||| |||||||||||||||||    
T  15000552 aatcaattctgtcagaatcaattctatgcaaagttaaaccaaacacacact 15000602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 41065439 - 41065501
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacac 86  Q
    ||||||||||||  ||||||||||||||| |||||||| |||  |||||| ||||||||||||    
T  41065439 aatcaattctgatggaatcaattctgtcataatcaattctatccaaagctgaaccaaacacac 41065501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 12910578 - 12910619
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatat 65  Q
    ||||||||||  ||||||||||||||||||||||||||||||    
T  12910578 aatcaattctctcagaatcaattctgtcagaatcaattatat 12910619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 30139234 - 30139161
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacacttagtt 94  Q
    |||||||||||||  |||||||||| || | ||||||||||||||  |||| | ||||||||||||||| ||||    
T  30139234 cagaatcaattctatcagaatcaatactattagaatcaattatatgcaaagttgaaccaaacacacactaagtt 30139161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 25472159 - 25472095
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacac 88  Q
    ||||||||||  ||||||||||| | | ||||||||||||||  |||||| ||||||||||||||    
T  25472159 aatcaattctatcagaatcaattttattagaatcaattatatgcaaagctgaaccaaacacacac 25472095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 1999657 - 1999596
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacaca 85  Q
    ||||||||||   |||||||||| |||||||||||||||| |  |||||| |||||||||||    
T  1999657 aatcaattctataagaatcaattatgtcagaatcaattatttccaaagctgaaccaaacaca 1999596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 25341006 - 25340969
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  25341006 aatcaattctgtcagaatcaattctgtcaaaatcaatt 25340969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 31011995 - 31011958
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  31011995 aatcaattctttcagaatcaattctgtcagaatcaatt 31011958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 31012025 - 31011988
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  31012025 aatcaattctgtcagaatcaattctgtcaaaatcaatt 31011988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 37371355 - 37371420
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacac 86  Q
    |||||||||||||  || |||||||||| | ||||||||||||||   ||||| ||||||||||||    
T  37371355 cagaatcaattctatcaaaatcaattctattagaatcaattatatccgaagctgaaccaaacacac 37371420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 25340994 - 25340954
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  25340994 cagaatcaattctgtcaaaatcaattctttcagaatcaatt 25340954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 30139246 - 30139210
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaat 60  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  30139246 aatcaattctgtcagaatcaattctatcagaatcaat 30139210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 31012013 - 31011973
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  31012013 cagaatcaattctgtcaaaatcaattctttcagaatcaatt 31011973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 32451450 - 32451498
Alignment:
Q  39 aatcaattctgtcagaatcaattatatataaagctaaaccaaacacaca 87  Q
    |||||||||| |||||||||||| |||  |||||| |||||||||||||    
T  32451450 aatcaattctatcagaatcaattctattcaaagctgaaccaaacacaca 32451498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 43664249 - 43664197
Alignment:
Q  39 aatcaattctgtcagaatcaattatatataaagctaaaccaaacacacactta 91  Q
    |||||||| | ||||||||||||||||  |||||| ||| |||||||||||||    
T  43664249 aatcaattatctcagaatcaattatatccaaagctgaactaaacacacactta 43664197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 41512839 - 41512907
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacact 89  Q
    |||||||||||||  ||||||||||||||||| | |||||||||| ||||||| |||||||||||||||    
T  41512839 cagaatcaattctatcagaatcaattctgtcaaagtcaattatatctaaagctgaaccaaacacacact 41512907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 47655119 - 47655054
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacact 89  Q
    |||||||||||  |||||||||||| ||||||||||||||||  |||||| |||||||||||||||    
T  47655119 aatcaattctgtgagaatcaattctatcagaatcaattatatccaaagctgaaccaaacacacact 47655054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 27576832 - 27576895
Alignment:
Q  23 gaatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacac 86  Q
    |||||||||||  |||||||||||||||||||||||||| |||  |||||| ||||||||||||    
T  27576832 gaatcaattctatcagaatcaattctgtcagaatcaattctatccaaagctgaaccaaacacac 27576895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 50031526 - 50031596
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacactta 91  Q
    ||||||||||| |  ||||||||||||| ||||||||||||||||  |||||| || ||||||||||||||    
T  50031526 cagaatcaattatatcagaatcaattctatcagaatcaattatatccaaagctgaatcaaacacacactta 50031596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 7385915 - 7385983
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacact 89  Q
    ||||||||||||| |||||||||||||| | ||||||||||||||  |||||| || |||||| |||||    
T  7385915 cagaatcaattctaacagaatcaattctattagaatcaattatattcaaagctgaatcaaacaaacact 7385983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 24076133 - 24076200
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacactta 91  Q
    ||||||||||  || ||||||||||||||||||||||| |||  |||| | |||||||||||||||||    
T  24076133 aatcaattctctcaaaatcaattctgtcagaatcaattctatccaaagttgaaccaaacacacactta 24076200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 5271035 - 5270998
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  5271035 aatcaattctgtcagaatcaattctgtcagaatcaatt 5270998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 11829706 - 11829771
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacac 86  Q
    |||||||||||||   |||||||||||||||| |||||||| |||  |||||| ||||||||||||    
T  11829706 cagaatcaattctattagaatcaattctgtcataatcaattttatccaaagctgaaccaaacacac 11829771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 5271008 - 5270968
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  5271008 cagaatcaattctttcagaatcaattctgtcagaatcaatt 5270968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 5271023 - 5270983
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| ||||||||||||| ||||||||||||    
T  5271023 cagaatcaattctgtcagaatcaattctttcagaatcaatt 5270983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 7592723 - 7592683
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||||||||||||||||    
T  7592723 cagaatcaattctgtcaaaatcaattctgtcagaatcaatt 7592683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 27068494 - 27068556
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacac 86  Q
    |||||||| || ||||||||||| || || ||||||||||||  |||||| ||||||||||||    
T  27068494 aatcaattatgtcagaatcaattatgccataatcaattatatccaaagctgaaccaaacacac 27068556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 46408140 - 46408189
Alignment:
Q  39 aatcaattctgtcagaatcaattatatataaagctaaaccaaacacacact 89  Q
    |||||||||| |||||||||||| ||| ||| |||||||||||||||||||    
T  46408140 aatcaattctctcagaatcaattctatctaa-gctaaaccaaacacacact 46408189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 7592735 - 7592698
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  7592735 aatcaattctgtcagaatcaattctgtcaaaatcaatt 7592698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 11829694 - 11829731
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  11829694 aatcaattctgacagaatcaattctattagaatcaatt 11829731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 15353857 - 15353894
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  15353857 aatcaattctttcagaatcaattctgtcagaatcaatt 15353894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 26822004 - 26822041
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  26822004 aatcaattctgtcagaatcaattctgtcaaaatcaatt 26822041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 26822034 - 26822071
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  26822034 aatcaattctttcagaatcaattctgtcagaatcaatt 26822071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 26999790 - 26999753
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  26999790 aatcaattctttcagaatcaattctgtcagaatcaatt 26999753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 26999820 - 26999783
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  26999820 aatcaattctgtcagaatcaattctgtcaaaatcaatt 26999783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 36495879 - 36495842
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  36495879 aatcaattctttcagaatcaattctgtcagaatcaatt 36495842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 36495909 - 36495872
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  36495909 aatcaattctgtcagaatcaattctgtcaaaatcaatt 36495872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 38627886 - 38627923
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  38627886 aatcaattctgtcagaatcaattctgtcaaaatcaatt 38627923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 38627916 - 38627953
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  38627916 aatcaattctttcagaatcaattctgtcagaatcaatt 38627953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 41512827 - 41512864
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  41512827 aatcaattctgtcagaatcaattctatcagaatcaatt 41512864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 50978325 - 50978288
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  50978325 aatcaattctttcagaatcaattctgtcagaatcaatt 50978288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 50978355 - 50978318
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  50978355 aatcaattctgtcagaatcaattctgtcaaaatcaatt 50978318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 51487874 - 51487837
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  51487874 aatcaattctttcagaatcaattctgtcagaatcaatt 51487837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 51487904 - 51487867
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  51487904 aatcaattctgtcagaatcaattctgtcaaaatcaatt 51487867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 15353839 - 15353879
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  15353839 cagaatcaattctgccaaaatcaattctttcagaatcaatt 15353879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 26822016 - 26822056
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  26822016 cagaatcaattctgtcaaaatcaattctttcagaatcaatt 26822056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 26999808 - 26999768
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  26999808 cagaatcaattctgtcaaaatcaattctttcagaatcaatt 26999768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 33752705 - 33752669
Alignment:
Q  144 caattttagttgtattgtgtttgattgcaaaattgtt 180  Q
    |||||||| |||||||||||||||||| |||||||||    
T  33752705 caattttaattgtattgtgtttgattgtaaaattgtt 33752669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 36495897 - 36495857
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  36495897 cagaatcaattctgtcaaaatcaattctttcagaatcaatt 36495857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 38627898 - 38627938
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  38627898 cagaatcaattctgtcaaaatcaattctttcagaatcaatt 38627938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 50978343 - 50978303
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  50978343 cagaatcaattctgtcaaaatcaattctttcagaatcaatt 50978303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 51487892 - 51487852
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  51487892 cagaatcaattctgtcaaaatcaattctttcagaatcaatt 51487852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 56561178 - 56561245
Alignment:
Q  22 agaatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacact 89  Q
    ||||||||||||  ||||||||||| |||||||||||||| ||| ||||| |||||||||||||||||    
T  56561178 agaatcaattctatcagaatcaattatgtcagaatcaattctatctaaagttaaaccaaacacacact 56561245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 38768488 - 38768557
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacacttagt 93  Q
    ||||||||||  || ||||||||||||||||||||||| |||  |||||| |||||||||||||||||||    
T  38768488 aatcaattctatcaaaatcaattctgtcagaatcaattctatccaaagctgaaccaaacacacacttagt 38768557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 22605767 - 22605702
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacact 89  Q
    ||||||||||  || ||||||||||||||||||||||| |||  |||||| |||||||||||||||    
T  22605767 aatcaattctatcaaaatcaattctgtcagaatcaattctatccaaagctgaaccaaacacacact 22605702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 39733522 - 39733575
Alignment:
Q  36 cagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacact 89  Q
    ||||||||||||||||| ||||||||||||  |||||| |||||||||||||||    
T  39733522 cagaatcaattctgtcataatcaattatatccaaagctgaaccaaacacacact 39733575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 51677657 - 51677726
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacactt 90  Q
    |||||||||||||  ||||||||||||| | ||||||||||||||  |||| | ||||||||||||||||    
T  51677657 cagaatcaattctatcagaatcaattcttttagaatcaattatatccaaagttgaaccaaacacacactt 51677726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 26459674 - 26459742
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacact 89  Q
    |||||||||||||   |||||||||||||  |||||||||| |||  ||||||||||||||||||||||    
T  26459674 cagaatcaattctattagaatcaattctgctagaatcaattttatccaaagctaaaccaaacacacact 26459742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 28963269 - 28963201
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacact 89  Q
    |||||||||||||  ||||||||||||| | |||||||||| |||  |||||| |||||||||||||||    
T  28963269 cagaatcaattctatcagaatcaattctattagaatcaattttatccaaagctgaaccaaacacacact 28963201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 48407588 - 48407652
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacact 89  Q
    ||||||||||  || ||||||||||||||||||||||| |||  ||||||||| ||||||||||||    
T  48407588 aatcaattctatcaaaatcaattctgtcagaatcaattctat-caaagctaaatcaaacacacact 48407652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 24247226 - 24247266
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  24247226 cagaatcaattctgacaaaatcaattctttcagaatcaatt 24247266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 53663058 - 53662991
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacactta 91  Q
    |||||||| || || |||||||||| |||||||||||| |||  |||  |||||||||||||||||||    
T  53663058 aatcaattatgtcataatcaattctatcagaatcaattctatgcaaaattaaaccaaacacacactta 53662991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 24035600 - 24035563
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  24035600 aatcaattctttcagaatcaattctgtcagaatcaatt 24035563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 24035630 - 24035593
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  24035630 aatcaattctgtcagaatcaattctgtcaaaatcaatt 24035593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 24247244 - 24247281
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  24247244 aatcaattctttcagaatcaattctgtcagaatcaatt 24247281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 28963281 - 28963244
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  28963281 aatcaattctgtcagaatcaattctatcagaatcaatt 28963244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 31430924 - 31430887
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  31430924 aatcaattctttcagaatcaattctgtcagaatcaatt 31430887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 39382418 - 39382381
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  39382418 aatcaattctttcagaatcaattctgtcagaatcaatt 39382381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 39382448 - 39382411
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  39382448 aatcaattctgtcagaatcaattctgtcaaaatcaatt 39382411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 49128325 - 49128362
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  49128325 aatcaattctgtcagaatcaattctgtcaaaatcaatt 49128362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 49128355 - 49128392
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  49128355 aatcaattctttcagaatcaattctgtcagaatcaatt 49128392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 51677645 - 51677682
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  51677645 aatcaattctgtcagaatcaattctatcagaatcaatt 51677682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 24035618 - 24035578
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  24035618 cagaatcaattctgtcaaaatcaattctttcagaatcaatt 24035578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 31430942 - 31430902
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  31430942 cagaatcaattctgtcaaaatcaattctttcagaatcaatt 31430902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 39382436 - 39382396
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  39382436 cagaatcaattctgtcaaaatcaattctttcagaatcaatt 39382396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 49128337 - 49128377
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  49128337 cagaatcaattctgtcaaaatcaattctttcagaatcaatt 49128377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 31813893 - 31813956
Alignment:
Q  27 caattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacactt 90  Q
    |||||||  ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||    
T  31813893 caattctcccagaatcaattctgtcaaaatcaattctatctaaagctaaaccaaacacacactt 31813956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 48181744 - 48181808
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacac 88  Q
    ||||||||||  ||||||||||| ||||| ||||||||||||  |||||| ||||||||||||||    
T  48181744 aatcaattctatcagaatcaattatgtcaaaatcaattatattcaaagctgaaccaaacacacac 48181808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 51230380 - 51230448
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacact 89  Q
    |||||||||||||  | ||||||||||| ||| |||||||| ||| ||||| |||||||||||||||||    
T  51230380 cagaatcaattctctcggaatcaattctttcaaaatcaattctatctaaagttaaaccaaacacacact 51230448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 30811387 - 30811454
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacactta 91  Q
    ||||||||||| ||||||||||| | ||| |||||||| |||  |||| |||||||||||||||||||    
T  30811387 aatcaattctgtcagaatcaattatatcataatcaattctatccaaagttaaaccaaacacacactta 30811454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 39252160 - 39252227
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacactta 91  Q
    ||||||||||  ||||||||||| | | |||||||||||||| ||||| | |||||||||||||||||    
T  39252160 aatcaattctatcagaatcaattatattagaatcaattatatttaaagttgaaccaaacacacactta 39252227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 33025203 - 33025138
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacact 89  Q
    ||||||||||| ||||||||||| | |||||||||||  |||  |||||| |||||||||||||||    
T  33025203 aatcaattctgtcagaatcaattatatcagaatcaatcctatccaaagctgaaccaaacacacact 33025138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 48253904 - 48253835
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacactt 90  Q
    |||||||||||||  || |||||||||| | |||||||||| |||  |||||| ||||||||||||||||    
T  48253904 cagaatcaattctatcaaaatcaattctattagaatcaattttatccaaagctgaaccaaacacacactt 48253835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 51124799 - 51124762
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  51124799 aatcaattctgtcagaatcaattctgtcagaatcaatt 51124762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 51124772 - 51124732
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  51124772 cagaatcaattctttcagaatcaattctgtcagaatcaatt 51124732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 51124787 - 51124747
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| ||||||||||||| ||||||||||||    
T  51124787 cagaatcaattctgtcagaatcaattctttcagaatcaatt 51124747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 50392255 - 50392193
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacac 86  Q
    ||||||||||  || |||||||||||||||||| |||| |||  |||||| ||||||||||||    
T  50392255 aatcaattctatcaaaatcaattctgtcagaattaattttatccaaagctgaaccaaacacac 50392193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 54963157 - 54963207
Alignment:
Q  39 aatcaattctgtcagaatcaattatatataaagctaaaccaaacacacact 89  Q
    |||||||||| |||||||||||| |||  |||||| |||||||||||||||    
T  54963157 aatcaattctatcagaatcaattctatccaaagctgaaccaaacacacact 54963207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 1528175 - 1528212
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  1528175 aatcaattctgtcagaatcaattctgtcaaaatcaatt 1528212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 1528205 - 1528242
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  1528205 aatcaattctttcagaatcaattctgtcagaatcaatt 1528242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 30811372 - 30811413
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatat 65  Q
    ||||||||||  || |||||||||||||||||||||||||||    
T  30811372 aatcaattctctcaaaatcaattctgtcagaatcaattatat 30811413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 33025218 - 33025177
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatat 65  Q
    ||||||||||  || |||||||||||||||||||||||||||    
T  33025218 aatcaattctctcaaaatcaattctgtcagaatcaattatat 33025177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 38469850 - 38469887
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  38469850 aatcaattctgtcagaatcaattctgtcaaaatcaatt 38469887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 38469880 - 38469917
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  38469880 aatcaattctttcagaatcaattctgtcagaatcaatt 38469917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 47140749 - 47140712
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  47140749 aatcaattctttcagaatcaattctgtcagaatcaatt 47140712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 47140779 - 47140742
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  47140779 aatcaattctgtcagaatcaattctgtcaaaatcaatt 47140742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 47697389 - 47697426
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  47697389 aatcaattctttcagaatcaattctgtcagaatcaatt 47697426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 52693209 - 52693246
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  52693209 aatcaattctgtcagaatcaattctgtcaaaatcaatt 52693246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 52693239 - 52693276
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  52693239 aatcaattctttcagaatcaattctgtcagaatcaatt 52693276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 1528187 - 1528227
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  1528187 cagaatcaattctgtcaaaatcaattctttcagaatcaatt 1528227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 11264391 - 11264455
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacac 88  Q
    ||||||||||  ||||||||| |||||||||||||||| |||  |||||  || |||||||||||    
T  11264391 aatcaattctatcagaatcaactctgtcagaatcaattttatccaaagccgaatcaaacacacac 11264455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 38469862 - 38469902
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  38469862 cagaatcaattctgtcaaaatcaattctttcagaatcaatt 38469902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 45488507 - 45488443
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacac 88  Q
    ||||||||||  || |||||||| ||||| |||||||| |||  |||| ||||||||||||||||    
T  45488507 aatcaattctatcataatcaattatgtcataatcaattttatccaaagataaaccaaacacacac 45488443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 47140767 - 47140727
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  47140767 cagaatcaattctgtcaaaatcaattctttcagaatcaatt 47140727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 47697371 - 47697411
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  47697371 cagaatcaattctgccaaaatcaattctttcagaatcaatt 47697411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 52693221 - 52693261
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  52693221 cagaatcaattctgtcaaaatcaattctttcagaatcaatt 52693261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 21515134 - 21515084
Alignment:
Q  39 aatcaattctgtcagaatcaattatatataaagctaaaccaaacacacact 89  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  21515134 aatcaattctgtcagaatcaattctatctaaagctaaaccaaacacacact 21515084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 10683847 - 10683912
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacact 89  Q
    ||||||||||| ||||||||||| | ||| |||||||||||| ||||||| |||||||||||||||    
T  10683847 aatcaattctgtcagaatcaattatatcaaaatcaattatatctaaagctgaaccaaacacacact 10683912  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 4147493 - 4147556
Alignment:
Q  23 gaatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacac 86  Q
    |||||||||||  |||||||||||||||||||||||||| |||  |||||| ||||||||||||    
T  4147493 gaatcaattctatcagaatcaattctgtcagaatcaattctatccaaagctgaaccaaacacac 4147556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 31745413 - 31745346
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacactta 91  Q
    ||||||||||  || ||||||||||||||||||||||| ||| ||||||| |||||||||||| ||||    
T  31745413 aatcaattctatcataatcaattctgtcagaatcaattctatctaaagctgaaccaaacacaccctta 31745346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 10683832 - 10683873
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatat 65  Q
    ||||||||||  || |||||||||||||||||||||||||||    
T  10683832 aatcaattctctcaaaatcaattctgtcagaatcaattatat 10683873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 30019887 - 30019924
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  30019887 aatcaattctgtcagaatcaattctgtcaaaatcaatt 30019924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 30019917 - 30019954
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  30019917 aatcaattctttcagaatcaattctgtcagaatcaatt 30019954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 30019899 - 30019939
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  30019899 cagaatcaattctgtcaaaatcaattctttcagaatcaatt 30019939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 44240786 - 44240850
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacaca 85  Q
    |||||||||||||  ||||||||||| |||||||||||||| ||| ||||| |||||||||||||    
T  44240786 cagaatcaattctatcagaatcaattttgtcagaatcaattctatctaaagttaaaccaaacaca 44240850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 45275816 - 45275749
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacactta 91  Q
    ||||||||||| ||||||||||||| |||||||||||| |||  |||| | |||||||||||||||||    
T  45275816 aatcaattctgtcagaatcaattctatcagaatcaattctatccaaagttgaaccaaacacacactta 45275749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 36820965 - 36820895
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacactta 91  Q
    |||||||| ||||  |||||||||||||||||||||||||| ||| ||||| | |||||||||||| ||||    
T  36820965 cagaatcagttctatcagaatcaattctgtcagaatcaattttatctaaagttgaaccaaacacaccctta 36820895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 26575918 - 26575983
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacac 86  Q
    |||||||||||||  || ||||||||||||||||||||||| |||  |||||| ||||||||||||    
T  26575918 cagaatcaattctatcaaaatcaattctgtcagaatcaattctattcaaagctgaaccaaacacac 26575983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 8417350 - 8417420
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacactta 91  Q
    |||||| ||||||  || |||||||| | ||||||||||||||||  |||||| |||||||||||||||||    
T  8417350 cagaattaattctctcaaaatcaattatttcagaatcaattatatccaaagctgaaccaaacacacactta 8417420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 35801745 - 35801683
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacac 86  Q
    ||||||||||| || |||||||||| ||| ||||||||||||  |||||| ||||||||||||    
T  35801745 aatcaattctgtcacaatcaattctatcataatcaattatatccaaagctgaaccaaacacac 35801683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 194053 - 194090
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  194053 aatcaattctgtcagaatcaattctgtcaaaatcaatt 194090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 194083 - 194120
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  194083 aatcaattctttcagaatcaattctgtcagaatcaatt 194120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 308920 - 308957
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  308920 aatcaattctttcagaatcaattctgtcagaatcaatt 308957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 629381 - 629418
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  629381 aatcaattctgtcagaatcaattctgtcataatcaatt 629418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 629411 - 629448
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  629411 aatcaattctttcagaatcaattctgtcagaatcaatt 629448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 11071167 - 11071223
Alignment:
Q  36 cagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacacttagt 93  Q
    |||||||||||||| ||||||||||| |||  ||| | ||||||||||||||||||||    
T  11071167 cagaatcaattctgccagaatcaattttatccaaa-ccaaaccaaacacacacttagt 11071223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 30211251 - 30211288
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  30211251 aatcaattctgtcagaatcaattctgtcaaaatcaatt 30211288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 30211281 - 30211318
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  30211281 aatcaattctttcagaatcaattctgtcagaatcaatt 30211318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 30982609 - 30982572
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  30982609 aatcaattctttcagaatcaattctgtcagaatcaatt 30982572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 30982639 - 30982602
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  30982639 aatcaattctgtcagaatcaattctgtcaaaatcaatt 30982602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 34773828 - 34773791
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  34773828 aatcaattctttcagaatcaattctgtcagaatcaatt 34773791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 34773858 - 34773821
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  34773858 aatcaattctgtcagaatcaattctgtcaaaatcaatt 34773821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 194065 - 194105
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  194065 cagaatcaattctgtcaaaatcaattctttcagaatcaatt 194105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 308902 - 308942
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  308902 cagaatcaattctgtcaaaatcaattctttcagaatcaatt 308942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 629393 - 629433
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  629393 cagaatcaattctgtcataatcaattctttcagaatcaatt 629433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 30211263 - 30211303
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  30211263 cagaatcaattctgtcaaaatcaattctttcagaatcaatt 30211303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 30982627 - 30982587
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  30982627 cagaatcaattctgtcaaaatcaattctttcagaatcaatt 30982587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 34773846 - 34773806
Alignment:
Q  21 cagaatcaattctgacagaatcaattctgtcagaatcaatt 61  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  34773846 cagaatcaattctgtcaaaatcaattctttcagaatcaatt 34773806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 32468 - 32404
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacac 88  Q
    ||||||||||  || ||||||||| ||||||||||||| |||  |||||| ||||||||||||||    
T  32468 aatcaattctatcataatcaattcagtcagaatcaattctatccaaagctgaaccaaacacacac 32404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 38388 - 38452
Alignment:
Q  24 aatcaattctgacagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacacac 88  Q
    ||||||||||| || |||||||||| | ||||||||||||||  |||| | ||||||||||||||    
T  38388 aatcaattctgtcaaaatcaattctattagaatcaattatattcaaagttgaaccaaacacacac 38452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 92249 - 92299
Alignment:
Q  36 cagaatcaattctgtcagaatcaattatatataaagctaaaccaaacacac 86  Q
    ||||||||||| ||||||||||||||||||  |||| | ||||||||||||    
T  92249 cagaatcaattatgtcagaatcaattatatccaaagttgaaccaaacacac 92299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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