View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5131-Insertion-1 (Length: 778)
Name: NF5131-Insertion-1
Description: NF5131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5131-Insertion-1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 691; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 691; E-Value: 0
Query Start/End: Original strand, 8 - 778
Target Start/End: Complemental strand, 10122472 - 10121707
Alignment:
| Q |
8 |
ctattgatataggatagaatctgttctcctgttttacttcgaacaatagctgaaggtatcacgaatgggattgcaacaccttgatctgtttcgtcaataa |
107 |
Q |
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| T |
10122472 |
ctattgatataggatagaatctgttctcctgttttacttcgaacaatagctgaaggtatcacgaacgggattgcaacaccttgatctgtttcgtcaataa |
10122373 |
T |
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| Q |
108 |
gtatcatcccaactccacctgcctctttcactaccttacttttttccaattttgacgccattgaaccctcgtcgtgtctacacaccaaaattttcccttt |
207 |
Q |
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| T |
10122372 |
gtatcatcccaactccacctgcctctttaactaccttacttttttccaattttgacgccattgaaccctcgtcgtgtctacacaccaaaattttcccttt |
10122273 |
T |
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| Q |
208 |
tgttttggtcttgtttagtgagctatccaaacagtaactgcagaaatatagaaaagaggacaagatttaacttatgagccatctgtttgcattgatattt |
307 |
Q |
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| T |
10122272 |
tgttttggtcttgtttagtgagctatccaaacagtaactgcagaaatatagaaaagaggacaagatttaacttatgagccgtctgtttgcattgatattt |
10122173 |
T |
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| Q |
308 |
aggcaactctagcttttaagtaccttgtgcttcacctggattgataaggagtaaaatatcctgcaaaggcttcagatgcaggcattgttcttctagaggc |
407 |
Q |
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| T |
10122172 |
aggcaactctagcttttaagtaccttgtgcttcacctggattgataaggagtaaaatatcctgcaaaggcttcagatgcaggcattgttcttctagaggc |
10122073 |
T |
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| Q |
408 |
attcatttccactagactgagactctcaccctaatgcagttatagagaggactaattagtagtgcagaaaacatgccaagttnnnnnnnnncacagaatt |
507 |
Q |
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| T |
10122072 |
attcatttccactagactgagactctcaccctaatgcagttatagagaggactaattagtagtgcagaaaacatgccaagtt--aaaaaaacatagaatt |
10121975 |
T |
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| Q |
508 |
cagttttaccgcgatgttgatgccatttcccaacatgatatcagacgtgaaatccctatctgttgagccagcagcaacagtaataatccatggtgcaagg |
607 |
Q |
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| T |
10121974 |
cagttttaccgcgatgttgatgccatttcctaacatgatatcagacgtgaaatccctatctgttgagccagcagcaacagtaataatccatggtgcaagg |
10121875 |
T |
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| Q |
608 |
ttagttgcagagccaacggttccttcatttccagctgatgctactacaagtactccgtgcctagcagcatggaaagacccaacagatatggcatcattga |
707 |
Q |
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| T |
10121874 |
ttagttgcagagccaacggttccttcatttccagctgatgctactacaagtactccgtgtctagcagcatggaaagacccaacagatatggcatcattga |
10121775 |
T |
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| Q |
708 |
aatagtcaccttgaggagattcaggaccaagagataaagatataaatgtgaaacacccatctcttatggca |
778 |
Q |
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| T |
10121774 |
aatagtcaccttgaggagattcaggaccaagagataaagatat-aatgtg-aaca-ccatctcttatggca |
10121707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 6e-36; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 530 - 743
Target Start/End: Original strand, 30628125 - 30628338
Alignment:
| Q |
530 |
ccatttcccaacatgatatcagacgtgaaatccctatctgttgagccagcagcaacagtaataatccatggtgcaaggttagttgcagagccaacggttc |
629 |
Q |
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| T |
30628125 |
ccatttcctaatatgatatcagaagtgaaatccctatcagttgagccagcagcaacagtaagcatccaaggtgcaaggttggtagcagaaccaagatttc |
30628224 |
T |
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| Q |
630 |
cttcatttccagctgatgctactacaagtactccgtgcctagcagcatggaaagacccaacagatatggcatcattgaaatagtcaccttgaggagattc |
729 |
Q |
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||||||||||||| |||| || ||||| ||||| | | |||||||| || ||||| | |||||| |||||||||||||| || ||||| || |||| |
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| T |
30628225 |
cttcatttccagcagatgaaacaacaagcactccacggtttgcagcatgaaatgaccctatagatatagcatcattgaaataatctccttgtggtgattg |
30628324 |
T |
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| Q |
730 |
aggaccaagagata |
743 |
Q |
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| T |
30628325 |
agcaccaagagata |
30628338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 30627351 - 30627480
Alignment:
| Q |
11 |
ttgatataggatagaatctgttctcctgttttacttcgaacaatagctgaaggtatcacgaatgggattgcaacaccttgatctgtttcgtcaataagta |
110 |
Q |
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|||| |||||||||||||| || |||| |||| ||| ||||||||||||||| ||||| |||||||| |||||| |||||||||| || |||||||||| |
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| T |
30627351 |
ttgagataggatagaatcttttgtccttttttctttccaacaatagctgaagggatcacaaatgggatagcaacatcttgatctgtctcatcaataagta |
30627450 |
T |
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| Q |
111 |
tcatcccaactccacctgcctctttcacta |
140 |
Q |
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| T |
30627451 |
tcatgccaactccaccagcttctttcacta |
30627480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 322 - 439
Target Start/End: Original strand, 30627653 - 30627768
Alignment:
| Q |
322 |
tttaagtaccttgtgcttcacctggattgataaggagtaaaatatcctgcaaaggcttcagatgcaggcattgttcttctagaggcattcatttccacta |
421 |
Q |
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| T |
30627653 |
tttaagtaccttg--cttcacctggattggtaaggagtgaaatatcctgcaaatgcttcagaagctgaaattatccttgtggaggcattcatttcaaaga |
30627750 |
T |
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| Q |
422 |
gactgagactctcaccct |
439 |
Q |
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| T |
30627751 |
gacttagactttcaccct |
30627768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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