View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5131-Insertion-2 (Length: 636)
Name: NF5131-Insertion-2
Description: NF5131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5131-Insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 223 - 633
Target Start/End: Original strand, 17262181 - 17262586
Alignment:
| Q |
223 |
caacattatttgtttgtctttgaataaaacttaactctgagtttcttgtagagctaagcgaagttttaaacaaaattcaaatagcagaaaaattgaaatt |
322 |
Q |
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| T |
17262181 |
caacattatttgtttgtctctgaataaaacttaactctgagtttcttgtagagctaagcgaagttttaaacaaaattcaaatagtagaaaaattgaaatt |
17262280 |
T |
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| Q |
323 |
aagagtgaattttctctggataatgtcaatcacttgcttaaaagggaagtaattgcctcctgtaaactgatgggtcaagtgaaatcaactttcatcgtga |
422 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
17262281 |
aagagtgaattttctccggataatgtcaatcacttgcttaaaagggaagtcattgcctcctctaaactgatgggtcaagtgaaatcaactttcatcgtga |
17262380 |
T |
|
| Q |
423 |
gattttcagcatcgcatcgtcatttgtcactctattatctgaattgtgaagtcaatagnnnnnnnnnnnnnnnnnnnnnnnnctactaatatacatttca |
522 |
Q |
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| T |
17262381 |
gattttcagcatcgcatcttcatttgtcactctattatctgaagtgtgaagtcaatagaaaaagaaagaaaaaaagttaaaactactaatatacatttca |
17262480 |
T |
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| Q |
523 |
tccatcaaaaaaggcgtgattgtattggtcatcaagacaataggtaaagaaaatcaaaccatcacaatgcagaaaaatcagttagagcatggaggaaaaa |
622 |
Q |
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| T |
17262481 |
tccatc-aaaaaggcgtgattttatcggtcatcaagacaataggt----aaactcaaaccatcacaatgcagaaaaatcagttagagcatggaggaaaaa |
17262575 |
T |
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| Q |
623 |
ctaatgtccta |
633 |
Q |
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| T |
17262576 |
ctaatgtccta |
17262586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 17259085 - 17259169
Alignment:
| Q |
12 |
atgcacaaaggtaggtctagtatttaaactaatgataagggataatgtaacaaacctacgataagggagaacgtaacaaaccaaa |
96 |
Q |
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| T |
17259085 |
atgcacaaaggtaggtctagtatttaaactaatgataagggataatgtaacgaacctacgataagggagaacgtaacaaaccaaa |
17259169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 17259226 - 17259271
Alignment:
| Q |
180 |
tatccaccaaatatcattcactaacgatttcttgatctcttttcaa |
225 |
Q |
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| T |
17259226 |
tatccaccaaatataattcactaacgatttcttgatctcttttcaa |
17259271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 17254267 - 17254314
Alignment:
| Q |
46 |
ataagggataatgtaacaaacctacgataagggagaacgtaacaaacc |
93 |
Q |
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| T |
17254267 |
ataagagagaatataacaaacctaagataagggagaacgtaacaaacc |
17254314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 17254456 - 17254493
Alignment:
| Q |
55 |
aatgtaacaaacctacgataagggagaacgtaacaaac |
92 |
Q |
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| T |
17254456 |
aatgtaacaaacctaagataagggagaacgaaacaaac |
17254493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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