View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5131-Insertion-4 (Length: 503)
Name: NF5131-Insertion-4
Description: NF5131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5131-Insertion-4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 7 - 503
Target Start/End: Original strand, 35478729 - 35479225
Alignment:
| Q |
7 |
attatcttcttatattaataatcttgtccttgtttgttctatgtaggttgtgaatgagactttaaggatggcaaacataattggtgggatatttaggaga |
106 |
Q |
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| T |
35478729 |
attatcttcttatattaataatcttgtccttgtttgttctatgtaggttgtgaatgagactttaaggatggcaaacataattggtgggatatttaggaga |
35478828 |
T |
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| Q |
107 |
gcaatgacagacatcaatatcaaaggtatagtatgtattatcatgacaaaaacataatttaaaatcaaaacatttattttgaattttaatttttgacttg |
206 |
Q |
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| T |
35478829 |
gcaatgacagacatcaatatcaaaggtatagtatacattatcatgacaaaaacataatttaaaatcaaaacatttattttgaattttaatttttgacttg |
35478928 |
T |
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| Q |
207 |
taatacaggctacactattccaaaggggtggaaagtctttgcatcatttcgtgccgtacatctaaaccccgatcatttcaaagatgcgcgcaccttcaat |
306 |
Q |
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| T |
35478929 |
taatacaggctacactattccaaaggggtggaaagtctttgcatcatttcgtgccgtacatctaaaccccgatcatttcaaagatgcgcgcaccttcaat |
35479028 |
T |
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| Q |
307 |
ccatggagatggcaggtagcactctcattttatctttataggtgacgagacattagtctctgcagctgcacataaaggatgaacaatttacccaaaaaac |
406 |
Q |
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| T |
35479029 |
ccatggagatggcaggtagcactctcattttatctttataggtgacgagacattagtctctgcagctgcacataaaggatgaacaatttacccaaaaaac |
35479128 |
T |
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| Q |
407 |
catgaaaaagtatttttactatttatttgtactcgcttaactcattaaccaaaattaggctttataccttatagatgaatctctaacaaatccttcc |
503 |
Q |
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| T |
35479129 |
catgaaaaagtatttttactatttatttgtactcacttaactcattaaccaaaattaggctttataccttatagctgaatctctaacaaatccttcc |
35479225 |
T |
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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 245 - 324
Target Start/End: Original strand, 31557178 - 31557257
Alignment:
| Q |
245 |
ttgcatcatttcgtgccgtacatctaaaccccgatcatttcaaagatgcgcgcaccttcaatccatggagatggcaggta |
324 |
Q |
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| T |
31557178 |
ttgcatcatttcgtgctgtgcatttgaatcctgaacatttcaaagatgctcgcaccttcaatccatggagatggcaggta |
31557257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 31556956 - 31557045
Alignment:
| Q |
45 |
ctatgtaggttgtgaatgagactttaaggatggcaaacataattggtgggatatttaggagagcaatgacagacatcaatatcaaaggta |
134 |
Q |
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| T |
31556956 |
ctatgcaggttgtgaatgagaccttaagggttgcaaacataattggtgccatatttaggagaacaaccacagacatcgacataaaaggta |
31557045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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