View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5131-Insertion-5 (Length: 471)
Name: NF5131-Insertion-5
Description: NF5131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5131-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 2e-96; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 278 - 468
Target Start/End: Original strand, 24894081 - 24894271
Alignment:
| Q |
278 |
ggagctaaatccctcagtatatcccacgtcgaacacatgtcatccacagcagaaaccacaacccctggtggcggcttaagcatagatggactaactcctt |
377 |
Q |
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||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
24894081 |
ggagctaaatctctcagtatatcccacttcgaacacatgtcatccacagcagaaaccacaacccctggtggcggcttaagcatagacggactaactcctt |
24894180 |
T |
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| Q |
378 |
taataccactgctgccggaattgagttcggacgaagaccgagccttcatcgcctcccaagccgccgccggaatggagaaatcctccggtcc |
468 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24894181 |
taataccactgctgccggaattgagttcggacgaagaccgagccttcatcgcctcccaagccgccgccggaatggagaaatcctccggtcc |
24894271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 24893811 - 24893983
Alignment:
| Q |
8 |
aatctcacattagaaaatatactattcgacctagtatcccccctttggtttgccacttcaccaacttccccttccgaagaaagatccatcaaaagatccc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24893811 |
aatctcacattagaaaatatactattcgacctagtatcccccctttggtttgccacttcaccaacttccccttccgaagaaagatccatcaaaagatccc |
24893910 |
T |
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| Q |
108 |
atgttgagcatgttgagctagaaatagaattcctcaatagatcccacgatgagcatgtcgagctagtctctcc |
180 |
Q |
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| T |
24893911 |
atgttgagcatgttgagctagaaatagaattcctcaatagatcccacgatgagcatgtcgagctagtctctcc |
24893983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 278 - 395
Target Start/End: Original strand, 24999047 - 24999164
Alignment:
| Q |
278 |
ggagctaaatccctcagtatatcccacgtcgaacacatgtcatccacagcagaaaccacaacccctggtggcggcttaagcatagatggactaactcctt |
377 |
Q |
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||||| ||||||||||| ||||||||||| |||||| ||||||||||| |||||||| ||||||||| |||||||||||||| | || |||| ||| | |
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| T |
24999047 |
ggagcaaaatccctcagaatatcccacgttgaacacgtgtcatccacaacagaaacccgaacccctggcggcggcttaagcatcggcggtctaattccct |
24999146 |
T |
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| Q |
378 |
taataccactgctgccgg |
395 |
Q |
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||||||||| |||||||| |
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| T |
24999147 |
taataccaccgctgccgg |
24999164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 410 - 468
Target Start/End: Original strand, 24999422 - 24999480
Alignment:
| Q |
410 |
gaagaccgagccttcatcgcctcccaagccgccgccggaatggagaaatcctccggtcc |
468 |
Q |
| |
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| T |
24999422 |
gaagaccgaaccttcatcgcctcccaagccgccgccggaatcgagaaatcctccggtcc |
24999480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 24905637 - 24905703
Alignment:
| Q |
8 |
aatctcacattagaaaatatactattcgacctagtatcccccctttggtttgccacttcaccaacttccc |
77 |
Q |
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||||||| |||||||||| ||| |||||| | |||||||| |||||||| |||||||||||||||||| |
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| T |
24905637 |
aatctcagattagaaaatgtacaattcgagcaagtatccc---tttggtttcccacttcaccaacttccc |
24905703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 24922729 - 24922767
Alignment:
| Q |
8 |
aatctcacattagaaaatatactattcgacctagtatcc |
46 |
Q |
| |
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||||||||||||| | ||||||||||||||||||||||| |
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| T |
24922729 |
aatctcacattaggagatatactattcgacctagtatcc |
24922767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 24998819 - 24998857
Alignment:
| Q |
8 |
aatctcacattagaaaatatactattcgacctagtatcc |
46 |
Q |
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||||||||||||| | ||||||||||||||||||||||| |
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| T |
24998819 |
aatctcacattaggagatatactattcgacctagtatcc |
24998857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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