View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5131-Insertion-6 (Length: 234)
Name: NF5131-Insertion-6
Description: NF5131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5131-Insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 7 - 169
Target Start/End: Original strand, 1855171 - 1855333
Alignment:
| Q |
7 |
aaattcaacaacacaagatcatacaccatgttacataaattccaaatttatgctcaattgtacagacaattccaaattaatttatggtaagaatatacaa |
106 |
Q |
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| T |
1855171 |
aaattcaacagcacaagatcatacaccatgttacataaattccaaatttatgctcacttgtacagacaattccaaattaatttatggtaagaatatacaa |
1855270 |
T |
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| Q |
107 |
gtcctagacataaatccccaaggtcaaatggaaatgagatttttcgtctcacgtctctgtacg |
169 |
Q |
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| T |
1855271 |
gtcctagacataaatccccaaggtcaaatggaaatgagatttttcgtctcacatctctgtacg |
1855333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 1817919 - 1817866
Alignment:
| Q |
105 |
aagtcctagacataaatccccaaggtcaaatggaaatgagatttttcgtctcac |
158 |
Q |
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| T |
1817919 |
aagtcctggacataaatccccaaggtcaagtggaaatgaaattttcagtctcac |
1817866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 1844948 - 1844913
Alignment:
| Q |
7 |
aaattcaacaacacaagatcatacaccatgttacat |
42 |
Q |
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| T |
1844948 |
aaattcaacaacacaagatcatacaccattttacat |
1844913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 234
Target Start/End: Original strand, 1855362 - 1855392
Alignment:
| Q |
204 |
ccgaaaaagcaaataaaccttctctcagagt |
234 |
Q |
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| T |
1855362 |
ccgaaaaagcaaataaaccttctctcagagt |
1855392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 1818017 - 1817969
Alignment:
| Q |
7 |
aaattcaacaacacaagatcatacaccatgttacataaattccaaattt |
55 |
Q |
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| T |
1818017 |
aaattcaacagcacaacatcatacaccatgttacatggattcaaaattt |
1817969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 154
Target Start/End: Original strand, 37566744 - 37566845
Alignment:
| Q |
53 |
tttatgctcaattgtacagacaattccaaattaatttatggtaagaatatacaagtcctagacataaatccccaaggtcaaatggaaatgagatttttcg |
152 |
Q |
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|||| ||||| ||||||| |||| ||||||||||| |||||||||| |||||||||||||||||||||| || |||||||||||||||| |||||||| |
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| T |
37566744 |
tttaagctcacttgtacaaacaactccaaattaatccgtggtaagaatctacaagtcctagacataaatccgcacggtcaaatggaaatgaaatttttcg |
37566843 |
T |
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| Q |
153 |
tc |
154 |
Q |
| |
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|| |
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|
| T |
37566844 |
tc |
37566845 |
T |
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