View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5131-Insertion-7 (Length: 126)

Name: NF5131-Insertion-7
Description: NF5131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5131-Insertion-7
NF5131-Insertion-7
[»] chr4 (11 HSPs)
chr4 (7-105)||(23401931-23402029)
chr4 (7-106)||(24307079-24307178)
chr4 (7-105)||(23408863-23408961)
chr4 (7-106)||(26832591-26832690)
chr4 (7-106)||(26433880-26433979)
chr4 (7-106)||(26435660-26435759)
chr4 (7-105)||(23868589-23868687)
chr4 (7-105)||(23416029-23416127)
chr4 (13-107)||(34662370-34662464)
chr4 (7-106)||(23885683-23885782)
chr4 (8-105)||(23453696-23453793)


Alignment Details
Target: chr4 (Bit Score: 87; Significance: 4e-42; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 4e-42
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 23402029 - 23401931
Alignment:
Q  7 accaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcatctc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||    
T  23402029 accaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgggtttcttctc 23401931  T

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Target: chr4; HSP #2
Raw Score: 84; E-Value: 2e-40
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 24307178 - 24307079
Alignment:
Q  7 accaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcatctct 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  24307178 accaccttcctttggtagcttctttcctgcctttggcttcttctcagcaggagccttctcggcgacggtggacttcttctcctctgcgggtttcttctct 24307079  T

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Target: chr4; HSP #3
Raw Score: 83; E-Value: 9e-40
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 23408863 - 23408961
Alignment:
Q  7 accaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcatctc 105  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||    
T  23408863 accaccttcctttggtagcttctttcctgccttgggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgggtttcttctc 23408961  T

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Target: chr4; HSP #4
Raw Score: 80; E-Value: 6e-38
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 26832690 - 26832591
Alignment:
Q  7 accaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcatctct 106  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||    
T  26832690 accaccttcctttggaagcttctttccggcctttggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctggtttcttctct 26832591  T

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Target: chr4; HSP #5
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 26433979 - 26433880
Alignment:
Q  7 accaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcatctct 106  Q
    ||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||    
T  26433979 accaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctggtttcttctct 26433880  T

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Target: chr4; HSP #6
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 26435759 - 26435660
Alignment:
Q  7 accaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcatctct 106  Q
    ||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||    
T  26435759 accaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctggtttcttctct 26435660  T

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Target: chr4; HSP #7
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 23868687 - 23868589
Alignment:
Q  7 accaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcatctc 105  Q
    ||||||||||||||| ||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23868687 accaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctctgcgggtttcttctc 23868589  T

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Target: chr4; HSP #8
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 23416029 - 23416127
Alignment:
Q  7 accaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcatctc 105  Q
    |||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| || |||||| ||||    
T  23416029 accaccttcctttggtagcttcttccctgcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagctggtttcttctc 23416127  T

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Target: chr4; HSP #9
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 34662370 - 34662464
Alignment:
Q  13 ttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcatctctc 107  Q
    ||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||| ||||||    
T  34662370 ttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttcttctctc 34662464  T

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Target: chr4; HSP #10
Raw Score: 68; E-Value: 8e-31
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 23885782 - 23885683
Alignment:
Q  7 accaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcatctct 106  Q
    ||||||||||||||| ||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| || |||||| |||||    
T  23885782 accaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctcagctggtttcttctct 23885683  T

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Target: chr4; HSP #11
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 23453696 - 23453793
Alignment:
Q  8 ccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcatctc 105  Q
    ||||||||||| || ||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||| || |||||| ||||    
T  23453696 ccaccttccttaggaagcttctttccagcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagcaggtttcttctc 23453793  T

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