View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5131_high_10 (Length: 248)

Name: NF5131_high_10
Description: NF5131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5131_high_10
NF5131_high_10
[»] chr5 (7 HSPs)
chr5 (7-248)||(24893015-24893247)
chr5 (92-248)||(24997067-24997214)
chr5 (92-248)||(24920980-24921127)
chr5 (7-89)||(24996953-24997037)
chr5 (7-89)||(24920868-24920950)
chr5 (7-62)||(24903265-24903320)
chr5 (143-223)||(24903376-24903456)
[»] scaffold0685 (1 HSPs)
scaffold0685 (7-229)||(4650-4863)
[»] scaffold0099 (2 HSPs)
scaffold0099 (143-248)||(33949-34056)
scaffold0099 (8-94)||(33780-33872)


Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 24893015 - 24893247
Alignment:
Q  7 tcgaagaatattctcatgttcaaactgactcagaagtgcaatttcctgagaatgaggaagaagtagtgagaaaacatatagattgaaagatattgcacaa 106  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24893015 tcgaacaatattctcatgttcaaactgactcagaagtgcaatttcctgagaatgaggaagaagtagtgagaaaacatatagattgaaagatattgcacaa 24893114  T
Q  107 gacagcaaagtatttataagaaaacctttatctaaattatcttcataaaaggatttcgatcaatggaaaattgaagtatacaataattacgaaggaatag 206  Q
    |||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24893115 gacagcaaagtatttataagaaaacct---------ttatcttcataaaaggatttcgatcaatggaaaattgaagtatacaataattacgaaggaatag 24893205  T
Q  207 aaagagaaagcctgtcttacgtgctccagttgaacgacactt 248  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  24893206 aaagagaaagcctgtcttacgtgctccagttgaacgacactt 24893247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 92 - 248
Target Start/End: Original strand, 24997067 - 24997214
Alignment:
Q  92 aaagatattgcacaagacagcaaagtatttataagaaaacctttatctaaattatcttcataaaaggatttcgatcaatggaaaattgaagtatacaata 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||| |  ||||||||||||||||||||||||    
T  24997067 aaagatattgcacaagacagcaaagtatttataagaaaacctttat---------cttcataaaaggatttcaaataatggaaaattgaagtatacaata 24997157  T
Q  192 attacgaaggaatagaaagagaaagcctgtcttacgtgctccagttgaacgacactt 248  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24997158 attatgaagcaatagaaagagaaagcctgtcttacgtgctccagttgaacgacactt 24997214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 92 - 248
Target Start/End: Original strand, 24920980 - 24921127
Alignment:
Q  92 aaagatattgcacaagacagcaaagtatttataagaaaacctttatctaaattatcttcataaaaggatttcgatcaatggaaaattgaagtatacaata 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||  | ||||||||||||||||||||||    
T  24920980 aaagatattgcacaagacagcaaagtatttataagaaaacctttat---------cttcataaaaggatttcgaatattggaaaattgaagtatacaata 24921070  T
Q  192 attacgaaggaatagaaagagaaagcctgtcttacgtgctccagttgaacgacactt 248  Q
    |||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  24921071 attatgaagcaatagaaagagaaagcctatcttacgtgctccagttgaacgacactt 24921127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 24996953 - 24997037
Alignment:
Q  7 tcgaagaatattctcatgttcaaactgactcagaagtgcaatttcctgagaatgaggaagaagt--agtgagaaaacatatagat 89  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||  |||||||||||||||||||    
T  24996953 tcgaacaatattctcatgttcaaactgactcagaagtgcaatttcctgagagtgaggtagaagtaaagtgagaaaacatatagat 24997037  T

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Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 24920868 - 24920950
Alignment:
Q  7 tcgaagaatattctcatgttcaaactgactcagaagtgcaatttcctgagaatgaggaagaagt--agtgagaaaacatatagat 89  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||  |||||||||||||||||||    
T  24920868 tcgaacaatattctcatgttcaaactgactcagaagtgcaatttcctgag--tgaggtagaagtaaagtgagaaaacatatagat 24920950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 24903265 - 24903320
Alignment:
Q  7 tcgaagaatattctcatgttcaaactgactcagaagtgcaatttcctgagaatgag 62  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  24903265 tcgaacaatattctcgtgttcaaactgactcagaagtgcaatttcctgagagtgag 24903320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 24903376 - 24903456
Alignment:
Q  143 ttatcttcataaaaggatttcgatcaatggaaaattgaagtatacaataattacgaaggaatagaaagagaaagcctgtct 223  Q
    |||||||||||||||||||| ||| |||||||| ||||| |||| || ||||| |||| ||||||||||| |||| |||||    
T  24903376 ttatcttcataaaaggattttgattaatggaaagttgaattataaaaaaattatgaagcaatagaaagagtaagcatgtct 24903456  T

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Target: scaffold0685 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0685
Description:

Target: scaffold0685; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 4650 - 4863
Alignment:
Q  7 tcgaagaatattctcatgttcaaactgactcagaagtgcaatttcctgagaatgaggaagaagtagtgagaaaacatatagattgaaagatattgcacaa 106  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4650 tcgaacaatattctcatgttcaaactgactcagaagtgcaatttcctgagaatgaggaagaagtagtgagaaaacatatagattgaaagatattgcacaa 4749  T
Q  107 gacagcaaagtatttataagaaaacctttatctaaattatcttcataaaaggatttcgatcaatggaaaattgaagtatacaataattacgaaggaatag 206  Q
    |||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4750 gacagcaaagtatttataagaaaacct---------ttatcttcataaaaggatttcgatcaatggaaaattgaagtatacaataattacgaaggaatag 4840  T
Q  207 aaagagaaagcctgtcttacgtg 229  Q
    |||||||||||||||||||||||    
T  4841 aaagagaaagcctgtcttacgtg 4863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0099 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 248
Target Start/End: Original strand, 33949 - 34056
Alignment:
Q  143 ttatcttcataaaa-ggatttcgatcaatggaaaa-ttgaagtatacaataattacgaaggaatagaaagagaaagcctgtcttacgtgctccagttgaa 240  Q
    |||||||||||||| |||||||||  | ||||||| ||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||    
T  33949 ttatcttcataaaaaggatttcgaatattggaaaaattgaagtatacaataattatgaagcaatagaaagagaaagcctatcttacgtgctccagttgaa 34048  T
Q  241 cgacactt 248  Q
    ||||||||    
T  34049 cgacactt 34056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0099; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 33780 - 33872
Alignment:
Q  8 cgaagaatattctcatgtt-caaactgactcagaagtgc-aatttcctgagaatgaggaagaagt---agtgag-aaaacatatagattgaaa 94  Q
    |||| |||||||||||||| ||||||||||||||||||| |||||||||||| ||||| ||||||   |||||| ||||||||||||| ||||    
T  33780 cgaacaatattctcatgttacaaactgactcagaagtgctaatttcctgagagtgaggtagaagtaaaagtgagaaaaacatatagatagaaa 33872  T

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