View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5131_high_11 (Length: 233)

Name: NF5131_high_11
Description: NF5131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5131_high_11
NF5131_high_11
[»] chr7 (12 HSPs)
chr7 (1-147)||(1907495-1907641)
chr7 (145-229)||(1907250-1907334)
chr7 (97-177)||(8595525-8595604)
chr7 (4-56)||(5240329-5240381)
chr7 (4-74)||(49069615-49069685)
chr7 (98-161)||(15889633-15889696)
chr7 (98-209)||(18070075-18070184)
chr7 (114-211)||(8826121-8826217)
chr7 (4-73)||(41769628-41769697)
chr7 (1-74)||(46423415-46423487)
chr7 (7-75)||(9887210-9887278)
chr7 (4-56)||(29034747-29034799)
[»] scaffold0004 (2 HSPs)
scaffold0004 (97-229)||(113659-113789)
scaffold0004 (98-209)||(354648-354758)
[»] chr3 (11 HSPs)
chr3 (97-208)||(39924739-39924849)
chr3 (91-229)||(3276680-3276815)
chr3 (91-177)||(5027806-5027891)
chr3 (91-180)||(3273318-3273405)
chr3 (6-75)||(45899521-45899590)
chr3 (4-73)||(8498015-8498084)
chr3 (1-42)||(11675368-11675409)
chr3 (7-56)||(32415632-32415681)
chr3 (4-50)||(4759853-4759899)
chr3 (7-73)||(13647016-13647082)
chr3 (4-38)||(39436525-39436559)
[»] scaffold0047 (1 HSPs)
scaffold0047 (97-210)||(8295-8407)
[»] chr5 (7 HSPs)
chr5 (97-209)||(14405486-14405597)
chr5 (4-75)||(27535155-27535227)
chr5 (1-73)||(4293811-4293883)
chr5 (5-56)||(1759878-1759929)
chr5 (5-75)||(10406848-10406918)
chr5 (94-147)||(40667332-40667384)
chr5 (7-56)||(25017288-25017337)
[»] scaffold0303 (1 HSPs)
scaffold0303 (91-177)||(20414-20499)
[»] chr6 (4 HSPs)
chr6 (97-176)||(12351423-12351501)
chr6 (91-177)||(14860611-14860695)
chr6 (94-208)||(18675800-18675912)
chr6 (4-56)||(29692338-29692390)
[»] chr1 (8 HSPs)
chr1 (91-209)||(16850451-16850567)
chr1 (105-177)||(21197541-21197612)
chr1 (1-75)||(17403005-17403079)
chr1 (4-74)||(48938695-48938765)
chr1 (4-60)||(43433835-43433891)
chr1 (1-53)||(52396499-52396551)
chr1 (1-56)||(41147472-41147527)
chr1 (4-56)||(40845311-40845363)
[»] scaffold0031 (1 HSPs)
scaffold0031 (94-177)||(90036-90117)
[»] scaffold0097 (1 HSPs)
scaffold0097 (97-177)||(32027-32106)
[»] chr4 (9 HSPs)
chr4 (1-83)||(13498087-13498169)
chr4 (1-69)||(32293710-32293778)
chr4 (1-74)||(27545919-27545992)
chr4 (14-82)||(31494632-31494700)
chr4 (17-75)||(51581434-51581492)
chr4 (7-68)||(52164472-52164532)
chr4 (4-56)||(26040357-26040409)
chr4 (1-73)||(31463273-31463345)
chr4 (7-75)||(55120154-55120222)
[»] chr2 (6 HSPs)
chr2 (7-75)||(11659325-11659393)
chr2 (4-73)||(37230280-37230349)
chr2 (1-74)||(2209895-2209968)
chr2 (1-73)||(2239639-2239711)
chr2 (7-75)||(2805446-2805514)
chr2 (4-56)||(33726440-33726492)
[»] scaffold0882 (1 HSPs)
scaffold0882 (97-208)||(1164-1273)
[»] scaffold0766 (1 HSPs)
scaffold0766 (97-208)||(2130-2239)
[»] chr8 (3 HSPs)
chr8 (4-75)||(7532845-7532916)
chr8 (4-73)||(11332774-11332843)
chr8 (9-49)||(25636694-25636734)
[»] scaffold0050 (1 HSPs)
scaffold0050 (6-67)||(37375-37436)
[»] scaffold0070 (1 HSPs)
scaffold0070 (9-73)||(39625-39689)


Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 1907641 - 1907495
Alignment:
Q  1 tttaccatttttcaatacaatatttctctttttatccttttatccaatgcctcaagagcactctttaacatttccgataaaaataataacaaaactcaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  1907641 tttaccatttttcaatacaatatttctctttttatccttttatccaatgtctcaagagcactctttagcatttccgataaaaataataacaaaactcagg 1907542  T
Q  101 acttgaaagcttgaatcttcttttccactttttgcattgttgttctt 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  1907541 acttgaaagcttgaatcttcttttccactttttgcattgttgttctt 1907495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 1907334 - 1907250
Alignment:
Q  145 cttgtaggacttctttttgtcaattatcaaaactaaaatatttctcgcaagacatatatgcacattctctctcctttttgatgat 229  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1907334 cttgtaggacttctttttgtcaatcatcaaaactaaaatatttctcgcaagacatatatgcacattctctcccctttttgatgat 1907250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 8595525 - 8595604
Alignment:
Q  97 caagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaattatcaaaac 177  Q
    ||||||||||| |||||||||||||||||| ||||||||||| ||| |||| ||||||||| |||||||||| ||||||||    
T  8595525 caagacttgaaggcttgaatcttcttttccgctttttgcatttttgatcttctaggacttc-ttttgtcaatcatcaaaac 8595604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 5240381 - 5240329
Alignment:
Q  4 accatttttcaatacaatatttctctttttatccttttatccaatgcctcaag 56  Q
    ||||||||||||||| |||||||| ||||||||| ||||||||||||||||||    
T  5240381 accatttttcaatactatatttctatttttatccctttatccaatgcctcaag 5240329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 49069615 - 49069685
Alignment:
Q  4 accatttttcaatacaatatttctctttttatccttttatccaatgcctcaagagcactctttaacatttc 74  Q
    ||||||||||||||| |||||||| |||||||| | |||||||||||| |||   ||||||||||||||||    
T  49069615 accatttttcaatactatatttctatttttatcttcttatccaatgccccaaagacactctttaacatttc 49069685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 15889696 - 15889633
Alignment:
Q  98 aagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttt 161  Q
    |||||| |||||| ||||||||||||||| ||||||||||  |||||| | |||||||||||||    
T  15889696 aagactagaaagcctgaatcttcttttccgctttttgcatctttgttcatctaggacttctttt 15889633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 209
Target Start/End: Original strand, 18070075 - 18070184
Alignment:
Q  98 aagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaattatcaaaactaaaatatttctcgcaagac 197  Q
    ||||||||| ||||||||| ||||||||| | |||| |||  |||||||| ||||||||| |||||||||| |||||||| ||| |||| ||  |||| |    
T  18070075 aagacttgatagcttgaat-ttcttttccgccttttacatctttgttcttctaggacttc-ttttgtcaatcatcaaaaccaaagtattcctatcaaggc 18070172  T
Q  198 atatatgcacat 209  Q
    |||||| |||||    
T  18070173 atatattcacat 18070184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 211
Target Start/End: Complemental strand, 8826217 - 8826121
Alignment:
Q  114 aatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaattatcaaaactaaaatatttctcgcaagacatatatgcacattc 211  Q
    |||||||||||| |||||||||||| || ||||| ||| ||||| |||||||||| |||||||| ||  |||| ||  |||| ||||||| |||||||    
T  8826217 aatcttcttttctactttttgcattatttttcttctagcacttc-ttttgtcaatcatcaaaaccaatgtattcctgtcaaggcatatattcacattc 8826121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 41769697 - 41769628
Alignment:
Q  4 accatttttcaatacaatatttctctttttatccttttatccaatgcctcaagagcactctttaacattt 73  Q
    ||||||||| |||| ||| ||||| |||||||| | ||| |||||||  |||| ||||||||||||||||    
T  41769697 accattttttaatataatgtttctatttttatcatcttaaccaatgctccaagggcactctttaacattt 41769628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 46423415 - 46423487
Alignment:
Q  1 tttaccatttttcaatacaatatttctctttttatccttttatccaatgcctcaagagcactctttaacatttc 74  Q
    |||||||||||| |||||||||||| | ||||||| || ||||| |||| || ||| ||||||||||| |||||    
T  46423415 tttaccatttttaaatacaatatttttatttttattctcttatcaaatgtcttaag-gcactctttaatatttc 46423487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 9887210 - 9887278
Alignment:
Q  7 atttttcaatacaatatttctctttttatccttttatccaatgcctcaagagcactctttaacatttcc 75  Q
    ||||| |||| |||||||||| |||||||||| ||| |||||| |  ||| | ||||||||||||||||    
T  9887210 attttccaatgcaatatttctatttttatcctcttaaccaatgtcctaagggtactctttaacatttcc 9887278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 29034747 - 29034799
Alignment:
Q  4 accatttttcaatacaatatttctctttttatccttttatccaatgcctcaag 56  Q
    |||||||| |||||| |||||| | |||||||||  |||||||||||||||||    
T  29034747 accattttccaatactatatttatatttttatccccttatccaatgcctcaag 29034799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 97 - 229
Target Start/End: Original strand, 113659 - 113789
Alignment:
Q  97 caagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaattatcaaaactaaaatatttctcgcaaga 196  Q
    ||||||| |||||||||||||||||||||| |||||||||| | ||||||| |||||||||  |||||||||||||||||||||| | || ||  ||||     
T  113659 caagactagaaagcttgaatcttcttttccgctttttgcatcgctgttcttctaggacttc-atttgtcaattatcaaaactaaagtgttcctgtcaagg 113757  T
Q  197 catatatgcacattctctctcctttttgatgat 229  Q
    ||||||| ||||||||| | |||||||||||||    
T  113758 catatattcacattctc-cccctttttgatgat 113789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 209
Target Start/End: Original strand, 354648 - 354758
Alignment:
Q  98 aagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaattatcaaaactaaaatatttctcgcaagac 197  Q
    ||||||||||||||||||||||||||||| ||||||||||  |||||||| ||||||||| |||||||||| |||||||||||| |||| ||  |||| |    
T  354648 aagacttgaaagcttgaatcttcttttccgctttttgcatctttgttcttctaggacttc-ttttgtcaatcatcaaaactaaagtattcctgtcaaggc 354746  T
Q  198 atatatgcacat 209  Q
    |||||| |||||    
T  354747 atatattcacat 354758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 97 - 208
Target Start/End: Complemental strand, 39924849 - 39924739
Alignment:
Q  97 caagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaattatcaaaactaaaatatttctcgcaaga 196  Q
    |||||||||||||||||||||||||||||| ||||||||||  |||||||| ||||||||| |||||||||| |||||||||||| |||| ||  ||||     
T  39924849 caagacttgaaagcttgaatcttcttttccgctttttgcatctttgttcttctaggacttc-ttttgtcaatcatcaaaactaaagtattcctgtcaagg 39924751  T
Q  197 catatatgcaca 208  Q
    ||||||| ||||    
T  39924750 catatattcaca 39924739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 91 - 229
Target Start/End: Complemental strand, 3276815 - 3276680
Alignment:
Q  91 aaaactcaagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaattatcaaaactaaaatatttctc 190  Q
    ||||| |||||||||| | ||||||| ||||||||| ||||||||||||||| |||| ||||||||| |||||||||| |||||||||||  |||| ||     
T  3276815 aaaacccaagacttgataacttgaat-ttcttttccgctttttgcattgttgctcttctaggacttc-ttttgtcaatcatcaaaactaatgtattcctg 3276718  T
Q  191 gcaagacatatatgcacattctctctcctttttgatgat 229  Q
     |||| ||||||| ||||||||| | |||||||||||||    
T  3276717 tcaaggcatatattcacattctc-cccctttttgatgat 3276680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 91 - 177
Target Start/End: Original strand, 5027806 - 5027891
Alignment:
Q  91 aaaactcaagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaattatcaaaac 177  Q
    |||| |||||||| |||||||||||| ||||||||| |||||||||| ||||||||| ||||||||| |||||||||| ||||||||    
T  5027806 aaaattcaagactagaaagcttgaatattcttttccgctttttgcatcgttgttcttctaggacttc-ttttgtcaatcatcaaaac 5027891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 91 - 180
Target Start/End: Complemental strand, 3273405 - 3273318
Alignment:
Q  91 aaaactcaagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaattatcaaaactaa 180  Q
    ||||| |||||||||| | ||||||| ||||||||| ||||||||||||||| | || ||||||||| |||||||||| |||||||||||    
T  3273405 aaaacccaagacttgataacttgaat-ttcttttcctctttttgcattgttgcttttctaggacttc-ttttgtcaatcatcaaaactaa 3273318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 45899590 - 45899521
Alignment:
Q  6 catttttcaatacaatatttctctttttatccttttatccaatgcctcaagagcactctttaacatttcc 75  Q
    |||||| ||||| ||||||||| ||||||| || |||||||||||| ||||||||||||||||| |||||    
T  45899590 cattttccaatataatatttctatttttattctcttatccaatgccccaagagcactctttaacgtttcc 45899521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 8498084 - 8498015
Alignment:
Q  4 accatttttcaatacaatatttctctttttatccttttatccaatgcctcaagagcactctttaacattt 73  Q
    |||||||||| ||  ||||||||| |||||||||||||| |||||| || ||||| |||||||| |||||    
T  8498084 accatttttcgatgtaatatttctatttttatccttttaaccaatgtcttaagagtactctttagcattt 8498015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 11675368 - 11675409
Alignment:
Q  1 tttaccatttttcaatacaatatttctctttttatcctttta 42  Q
    ||||||||||||||||||||||||||| ||||||||| ||||    
T  11675368 tttaccatttttcaatacaatatttctatttttatcccttta 11675409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 32415632 - 32415681
Alignment:
Q  7 atttttcaatacaatatttctctttttatccttttatccaatgcctcaag 56  Q
    |||||||||| | |||||||| ||||||||| ||||||||||||||||||    
T  32415632 atttttcaatgctatatttctatttttatccctttatccaatgcctcaag 32415681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 4759899 - 4759853
Alignment:
Q  4 accatttttcaatacaatatttctctttttatccttttatccaatgc 50  Q
    ||||||||||||| | |||||||| ||||||||| ||||||||||||    
T  4759899 accatttttcaatgctatatttctatttttatccctttatccaatgc 4759853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 13647082 - 13647016
Alignment:
Q  7 atttttcaatacaatatttctctttttatccttttatccaatgcctcaagagcactctttaacattt 73  Q
    |||||||||| |||||||||| |||||||||| ||| | ||||| ||||  ||| ||||||||||||    
T  13647082 atttttcaatccaatatttctatttttatcctcttaacaaatgcttcaaaggcaatctttaacattt 13647016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 39436525 - 39436559
Alignment:
Q  4 accatttttcaatacaatatttctctttttatcct 38  Q
    |||||||||||||||||||||||| ||||||||||    
T  39436525 accatttttcaatacaatatttctatttttatcct 39436559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 97 - 210
Target Start/End: Complemental strand, 8407 - 8295
Alignment:
Q  97 caagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaattatcaaaactaaaatatttctcgcaaga 196  Q
    |||||||||||||||||||||||||||||  ||||||||||  |||||||| ||||||||| |||||||||| |||||||||||| |||| ||  ||||     
T  8407 caagacttgaaagcttgaatcttcttttcggctttttgcatctttgttcttctaggacttc-ttttgtcaatcatcaaaactaaagtattcctgtcaagg 8309  T
Q  197 catatatgcacatt 210  Q
    ||||||| ||||||    
T  8308 catatattcacatt 8295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 97 - 209
Target Start/End: Original strand, 14405486 - 14405597
Alignment:
Q  97 caagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaattatcaaaactaaaatatttctcgcaaga 196  Q
    |||||||||||||||||||||||||||||| ||||||| ||  |||||||| ||||| ||| |||||||||| |||||||||||| |||| ||  ||||     
T  14405486 caagacttgaaagcttgaatcttcttttccgctttttgtatctttgttcttctaggatttc-ttttgtcaatcatcaaaactaaagtattcctgtcaagg 14405584  T
Q  197 catatatgcacat 209  Q
    ||||||| |||||    
T  14405585 catatattcacat 14405597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 27535155 - 27535227
Alignment:
Q  4 accatttttcaatacaatatttctctttttatccttttatccaatgcctcaagagcactc-tttaacatttcc 75  Q
    |||||||||||||||||||||| | ||||||||||||||| ||||||||||| | ||||| ||||||||||||    
T  27535155 accatttttcaatacaatatttatatttttatccttttattcaatgcctcaataacactcttttaacatttcc 27535227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 4293883 - 4293811
Alignment:
Q  1 tttaccatttttcaatacaatatttctctttttatccttttatccaatgcctcaagagcactctttaacattt 73  Q
    |||| ||||| ||||||||||||| || |||||||||||||| ||||||||  |||| |||||||||||||||    
T  4293883 tttatcatttctcaatacaatattactatttttatccttttaaccaatgccctaagaacactctttaacattt 4293811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 1759878 - 1759929
Alignment:
Q  5 ccatttttcaatacaatatttctctttttatccttttatccaatgcctcaag 56  Q
    |||||||||||||| |||||||| |||||||||| |||||||||||| ||||    
T  1759878 ccatttttcaatactatatttctatttttatcctcttatccaatgccccaag 1759929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 10406848 - 10406918
Alignment:
Q  5 ccatttttcaatacaatatttctctttttatccttttatccaatgcctcaagagcactctttaacatttcc 75  Q
    ||||||||||||||||||||||| ||  ||| ||||||||||||| |  ||| ||||||||||| ||||||    
T  10406848 ccatttttcaatacaatatttctattcctattcttttatccaatgtcctaagggcactctttaatatttcc 10406918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 40667332 - 40667384
Alignment:
Q  94 actcaagacttgaaagcttgaatcttcttttccactttttgcattgttgttctt 147  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||  ||||||||    
T  40667332 actcaagacttgatagcttgaat-ttcttttccactttttgcatcattgttctt 40667384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 25017337 - 25017288
Alignment:
Q  7 atttttcaatacaatatttctctttttatccttttatccaatgcctcaag 56  Q
    ||||| |||||| |||||||| |||||||||  |||||||||||||||||    
T  25017337 attttccaatactatatttctatttttatccccttatccaatgcctcaag 25017288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0303 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 91 - 177
Target Start/End: Complemental strand, 20499 - 20414
Alignment:
Q  91 aaaactcaagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaattatcaaaac 177  Q
    |||| |||||||| |||||||||||| ||||||||| |||||||||| ||||||||| ||||||||| |||||||||| ||||||||    
T  20499 aaaattcaagactagaaagcttgaatattcttttccgctttttgcatcgttgttcttctaggacttc-ttttgtcaatcatcaaaac 20414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 97 - 176
Target Start/End: Complemental strand, 12351501 - 12351423
Alignment:
Q  97 caagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaattatcaaaa 176  Q
    |||||||||||||||| ||||||||||||| ||||||||||  |||||||| ||||||||| |||||||||| |||||||    
T  12351501 caagacttgaaagcttaaatcttcttttccgctttttgcatctttgttcttctaggacttc-ttttgtcaatcatcaaaa 12351423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 177
Target Start/End: Complemental strand, 14860695 - 14860611
Alignment:
Q  91 aaaactcaagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaattatcaaaac 177  Q
    |||||||||||||||| ||||||||| ||||||||| |||||||| | ||||||||| ||||||||| |||||||||| ||||||||    
T  14860695 aaaactcaagacttgatagcttgaat-ttcttttccgctttttgcttcgttgttcttctaggacttc-ttttgtcaatcatcaaaac 14860611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 208
Target Start/End: Complemental strand, 18675912 - 18675800
Alignment:
Q  94 actcaagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaattatcaaaactaaaatatttctcgca 193  Q
    |||||||| |||| ||||||||| ||||||||| |||||||||| |||| |||| ||||||||| ||||||| || |||||||| ||| |||| ||  ||    
T  18675912 actcaagatttgatagcttgaat-ttcttttccgctttttgcatcgttgctcttctaggacttc-ttttgtccatcatcaaaaccaaagtattcctgtca 18675815  T
Q  194 agacatatatgcaca 208  Q
    || ||||||| ||||    
T  18675814 aggcatatattcaca 18675800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 29692390 - 29692338
Alignment:
Q  4 accatttttcaatacaatatttctctttttatccttttatccaatgcctcaag 56  Q
    ||||||||||||||| |||||||| ||||||||| ||||||||||||| ||||    
T  29692390 accatttttcaatactatatttctatttttatccatttatccaatgccccaag 29692338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 209
Target Start/End: Complemental strand, 16850567 - 16850451
Alignment:
Q  91 aaaactcaagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaattatcaaaactaaaatatttctc 190  Q
    ||||| |||||||||| | ||||||| ||||||||| ||||||||||||||| |||| ||||||||| |||||||||| |||||||||||  |||| ||     
T  16850567 aaaacccaagacttgataacttgaat-ttcttttccgctttttgcattgttgctcttctaggacttc-ttttgtcaatcatcaaaactaatgtattcctg 16850470  T
Q  191 gcaagacatatatgcacat 209  Q
     |||| ||||||| |||||    
T  16850469 tcaaggcatatattcacat 16850451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 21197612 - 21197541
Alignment:
Q  105 gaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaattatcaaaac 177  Q
    |||||||||||| ||||||||| ||||||||||  |||||||| ||||||||| |||||||||| ||||||||    
T  21197612 gaaagcttgaatattcttttccgctttttgcatctttgttcttctaggacttc-ttttgtcaatcatcaaaac 21197541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 17403005 - 17403079
Alignment:
Q  1 tttaccatttttcaatacaatatttctctttttatccttttatccaatgcctcaagagcactctttaacatttcc 75  Q
    |||||||||||| ||||||||||||   |||||||||  ||| ||||||||  |||||| |||||||||||||||    
T  17403005 tttaccattttttaatacaatattttaatttttatccccttaaccaatgccctaagagccctctttaacatttcc 17403079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 48938695 - 48938765
Alignment:
Q  4 accatttttcaatacaatatttctctttttatccttttatccaatgcctcaagagcactctttaacatttc 74  Q
    ||||||||  |||||||||||||| |||||||| | ||| | ||||||| |||||||||||||| ||||||    
T  48938695 accattttctaatacaatatttctatttttatcatcttaactaatgcctaaagagcactctttagcatttc 48938765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 43433835 - 43433891
Alignment:
Q  4 accatttttcaatacaatatttctctttttatccttttatccaatgcctcaagagca 60  Q
    ||||||||| ||||| |||||||| |||||||||  |||||||||||| ||||||||    
T  43433835 accattttttaatactatatttctatttttatccccttatccaatgccccaagagca 43433891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 52396499 - 52396551
Alignment:
Q  1 tttaccatttttcaatacaatatttctctttttatccttttatccaatgcctc 53  Q
    |||| ||||||||||||| |||||||| |||||||||  ||||||||||||||    
T  52396499 tttatcatttttcaatactatatttctatttttatccccttatccaatgcctc 52396551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 41147527 - 41147472
Alignment:
Q  1 tttaccatttttcaatacaatatttctctttttatccttttatccaatgcctcaag 56  Q
    |||||||||||||||| | |||||||| |||||||||  |||||||||||| ||||    
T  41147527 tttaccatttttcaatgctatatttctatttttatccccttatccaatgccccaag 41147472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 40845311 - 40845363
Alignment:
Q  4 accatttttcaatacaatatttctctttttatccttttatccaatgcctcaag 56  Q
    ||||||||||||||| |||||||| |||||||||  |||| ||||| ||||||    
T  40845311 accatttttcaatactatatttctatttttatccccttattcaatgtctcaag 40845363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 94 - 177
Target Start/End: Original strand, 90036 - 90117
Alignment:
Q  94 actcaagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaattatcaaaac 177  Q
    ||||||||||||| || |||||| ||||||||| |||||||||| ||||||||| ||||||||| |||||||||| ||||||||    
T  90036 actcaagacttgatagtttgaat-ttcttttccgctttttgcatcgttgttcttctaggacttc-ttttgtcaatcatcaaaac 90117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 32027 - 32106
Alignment:
Q  97 caagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaattatcaaaac 177  Q
    ||||||| |||||||||||| ||||||||| |||| ||||| ||||||||| |||||||||  ||||||||| ||||||||    
T  32027 caagactagaaagcttgaatattcttttccgctttatgcatcgttgttcttctaggacttc-atttgtcaatcatcaaaac 32106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 13498169 - 13498087
Alignment:
Q  1 tttaccatttttcaatacaatatttctctttttatccttttatccaatgcctcaagagcactctttaacatttccgataaaaa 83  Q
    ||||| ||||| ||||||||||||||| |||||||| | ||| ||||||| |||||  ||||||||| ||||||| |||||||    
T  13498169 tttactattttccaatacaatatttctatttttatcatcttaaccaatgcatcaaggacactctttagcatttcccataaaaa 13498087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 32293778 - 32293710
Alignment:
Q  1 tttaccatttttcaatacaatatttctctttttatccttttatccaatgcctcaagagcactctttaac 69  Q
    ||||||| ||||||||||||||||| | |||||||   ||||||||||| || ||||||||||||||||    
T  32293778 tttaccacttttcaatacaatatttttatttttatttctttatccaatgtcttaagagcactctttaac 32293710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 27545919 - 27545992
Alignment:
Q  1 tttaccatttttcaatacaatatttctctttttatccttttatccaatgcctcaagagcactctttaacatttc 74  Q
    |||| ||||||||||| |||||||||| |||||||||| |||   |||| || |||||||||||||| ||||||    
T  27545919 tttatcatttttcaatgcaatatttctatttttatcctcttaataaatgtcttaagagcactctttagcatttc 27545992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 31494700 - 31494632
Alignment:
Q  14 aatacaatatttctctttttatccttttatccaatgcctcaagagcactctttaacatttccgataaaa 82  Q
    |||||||| ||||| |||||||| | ||| | |||||| ||||||||||||||| ||||||| ||||||    
T  31494700 aatacaatgtttctatttttatcatcttaactaatgccccaagagcactctttagcatttcccataaaa 31494632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 51581492 - 51581434
Alignment:
Q  17 acaatatttctctttttatccttttatccaatgcctcaagagcactctttaacatttcc 75  Q
    |||| |||||| ||||| | | |||||||||||||||||| |||||||||| |||||||    
T  51581492 acaaaatttctatttttgttcctttatccaatgcctcaagggcactctttagcatttcc 51581434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 52164532 - 52164472
Alignment:
Q  7 atttttcaatacaatatttctctttttatccttttatccaatgcctcaagagcactctttaa 68  Q
    ||||||||||||||||||||| || |||||||| |||| ||||||  |||| ||||||||||    
T  52164532 atttttcaatacaatatttctattattatccttctatctaatgcccaaaga-cactctttaa 52164472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 26040409 - 26040357
Alignment:
Q  4 accatttttcaatacaatatttctctttttatccttttatccaatgcctcaag 56  Q
    |||||||| |||||| |||||||| |||||||||  |||||||||||| ||||    
T  26040409 accattttccaatactatatttctatttttatccccttatccaatgccccaag 26040357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 31463345 - 31463273
Alignment:
Q  1 tttaccatttttcaatacaatatttctctttttatccttttatccaatgcctcaagagcactctttaacattt 73  Q
    ||||||| ||| ||| |||| |||||| ||||| | | ||||||||||||| |||| |||||||||| |||||    
T  31463345 tttaccactttccaacacaaaatttctatttttgttcctttatccaatgccccaagggcactctttagcattt 31463273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 55120154 - 55120222
Alignment:
Q  7 atttttcaatacaatatttctctttttatccttttatccaatgcctcaagagcactctttaacatttcc 75  Q
    |||||||||||||||||||   |||||||| | ||| ||||| ||| |||| || ||||||||||||||    
T  55120154 atttttcaatacaatattttaatttttatcatcttaaccaataccttaagaacattctttaacatttcc 55120222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 11659325 - 11659393
Alignment:
Q  7 atttttcaatacaatatttctctttttatccttttatccaatgcctcaagagcactctttaacatttcc 75  Q
    ||||||||||||||||||| | |||||||||| ||| | |||||  |||| ||||||||||||||||||    
T  11659325 atttttcaatacaatatttttatttttatcctcttaacgaatgctccaagggcactctttaacatttcc 11659393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 37230280 - 37230349
Alignment:
Q  4 accatttttcaatacaatatttctctttttatccttttatccaatgcctcaagagcactctttaacattt 73  Q
    |||||||||||||||||||||||| || |||| || ||| ||||||||| ||   |||||||||||||||    
T  37230280 accatttttcaatacaatatttctattcttatgctattaaccaatgccttaatgacactctttaacattt 37230349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 2209968 - 2209895
Alignment:
Q  1 tttaccatttttcaatacaatatttctctttttatccttttatccaatgcctcaagagcactctttaacatttc 74  Q
    ||||||||||| ||||||| | ||| | |||| || || ||| |||||| | ||||||||||||||||||||||    
T  2209968 tttaccattttccaatacattttttttattttaattctcttaaccaatgtcccaagagcactctttaacatttc 2209895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 2239639 - 2239711
Alignment:
Q  1 tttaccatttttcaatacaatatttctctttttatccttttatccaatgcctcaagagcactctttaacattt 73  Q
    |||||||||||||| | |||||||||| | |||||||| ||| |||||| |  ||||||| |||||| |||||    
T  2239639 tttaccatttttcattgcaatatttctatctttatcctcttaaccaatgtcctaagagcattctttagcattt 2239711  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 2805446 - 2805514
Alignment:
Q  7 atttttcaatacaatatttctctttttatccttttatccaatgcctcaagagcactctttaacatttcc 75  Q
    |||||||||||||||| || | |||||||||| ||| |||||| ||  ||  |||||||||||||||||    
T  2805446 atttttcaatacaatacttatatttttatcctcttaaccaatgtcttcaggacactctttaacatttcc 2805514  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 33726440 - 33726492
Alignment:
Q  4 accatttttcaatacaatatttctctttttatccttttatccaatgcctcaag 56  Q
    ||||||||||||||| |||||| | |||||||||  |||||||||||| ||||    
T  33726440 accatttttcaatactatatttttatttttatccccttatccaatgccccaag 33726492  T

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Target: scaffold0882 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0882
Description:

Target: scaffold0882; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 208
Target Start/End: Original strand, 1164 - 1273
Alignment:
Q  97 caagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaattatcaaaactaaaatatttctcgcaaga 196  Q
    |||||||||| ||||||||| ||||||||| |||||||||| |||| || | ||||||||| ||||||| || |||||||| ||| |||| ||  ||||     
T  1164 caagacttgatagcttgaat-ttcttttccgctttttgcatcgttgctcgtctaggacttc-ttttgtccatcatcaaaaccaaagtattcctgtcaagg 1261  T
Q  197 catatatgcaca 208  Q
    ||||||| ||||    
T  1262 catatattcaca 1273  T

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Target: scaffold0766 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 208
Target Start/End: Complemental strand, 2239 - 2130
Alignment:
Q  97 caagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaattatcaaaactaaaatatttctcgcaaga 196  Q
    |||||||||| ||||||||| ||||||||| |||||||||| |||| || | ||||||||| ||||||| || |||||||| ||| |||| ||  ||||     
T  2239 caagacttgatagcttgaat-ttcttttccgctttttgcatcgttgctcgtctaggacttc-ttttgtccatcatcaaaaccaaagtattcctgtcaagg 2142  T
Q  197 catatatgcaca 208  Q
    ||||||| ||||    
T  2141 catatattcaca 2130  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 7532845 - 7532916
Alignment:
Q  4 accatttttcaatacaatatttctctttttatccttttatccaatgcctcaagagcactctttaacatttcc 75  Q
    |||||||| ||||||||||||||| |||||||||  ||| ||||||||  |||| ||||||||| |||||||    
T  7532845 accattttccaatacaatatttctatttttatccccttaaccaatgccctaagaacactctttagcatttcc 7532916  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 11332843 - 11332774
Alignment:
Q  4 accatttttcaatacaatatttctctttttatccttttatccaatgcctcaagagcactctttaacattt 73  Q
    ||||||| |||||||||||||||| |||||||| | ||| |||||||| |||  |||||||||| |||||    
T  11332843 accatttctcaatacaatatttctatttttatcttcttaaccaatgccacaatggcactctttagcattt 11332774  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 25636734 - 25636694
Alignment:
Q  9 ttttcaatacaatatttctctttttatccttttatccaatg 49  Q
    |||| |||||||||||||| |||||||||| ||||||||||    
T  25636734 tttttaatacaatatttctatttttatcctcttatccaatg 25636694  T

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Target: scaffold0050 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 37436 - 37375
Alignment:
Q  6 catttttcaatacaatatttctctttttatccttttatccaatgcctcaagagcactcttta 67  Q
    |||||||||||||||||||||| |||| ||||| |||||||||| |  |||| |||||||||    
T  37436 catttttcaatacaatatttctattttaatcctcttatccaatgtcctaagaacactcttta 37375  T

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Target: scaffold0070 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 39625 - 39689
Alignment:
Q  9 ttttcaatacaatatttctctttttatccttttatccaatgcctcaagagcactctttaacattt 73  Q
    ||||||||||||||||| | |||||||||| |||| ||||  |  ||| ||||||||||||||||    
T  39625 ttttcaatacaatatttttatttttatcctcttattcaatatcataagggcactctttaacattt 39689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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