View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5131_high_2 (Length: 376)
Name: NF5131_high_2
Description: NF5131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5131_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 368
Target Start/End: Original strand, 8336379 - 8336719
Alignment:
| Q |
19 |
ccaatatgttagtttctgccggccaaaatttcctcaaggtttgtttctttctttctctgtatttatcaatccaaaattaattctttcatattaattaact |
118 |
Q |
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| T |
8336379 |
ccaatatgttagtttctgccggccaaaatttcctcaaggtttgtttctttgtatctctc---------atccaaaattaattctttcatattaattaact |
8336469 |
T |
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| Q |
119 |
ttgattgttaatcctaattatagagtctatatcaattgggagcacgacatgtgtgggttctaagtacacttccattagggtgcttacctgcagctagatc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8336470 |
ttgattgttaatcctaattatagagtctatatcaattgggagcacgacatgtgtgggttctaagtacacttccattagggtgcttacctgcagctagatc |
8336569 |
T |
|
| Q |
219 |
tacaatgggaggaccattaagggtttgtgtagattttgagaatgggttagcaacacaatacaataacatgttacagcaggggctcgcaactgttaaaggc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8336570 |
tacaatgggaggaccattaagggtttgtgtagattttgagaatgggttagcagcacaatacaataacatgttacagcaggggcttgcaactgttaaaggc |
8336669 |
T |
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| Q |
319 |
tcccttcctgattatgatattagatttgttgatgtctatactcctatgct |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8336670 |
tcccttcctgattatgatattagatttgttgatgtctatactcctatgct |
8336719 |
T |
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