View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5131_low_1 (Length: 543)
Name: NF5131_low_1
Description: NF5131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5131_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 1e-85; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 334 - 532
Target Start/End: Complemental strand, 36616865 - 36616666
Alignment:
| Q |
334 |
ggttagaactaatctcagaaagctccataatctataatatttggtgggctaggannnnnnnnn-aagataagcaaattcctgatgatcaaactattaatt |
432 |
Q |
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| T |
36616865 |
ggttagaactaatctcagaaagctccataatctataatatttggtgggctacgaatttttttttaagataagcaaattcctgatgatcaaactattaatt |
36616766 |
T |
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| Q |
433 |
atgcatcacgtaacctgaatgagttctaaaatgaattgaaatattccttggaacctagattaccccattctgaggggaagaattcctcatgcatcaagtg |
532 |
Q |
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| T |
36616765 |
atgcatcacgtaacctgaatgagttctaaaatgaattgaaatattccttggaacctagattaccccattctgaggggaagaattcctcatgcatcaagtg |
36616666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 14 - 156
Target Start/End: Complemental strand, 36617419 - 36617277
Alignment:
| Q |
14 |
tcatcaaagaaaaaactttaataacaaccaagtgattcggcataagtggttaatggactccgcataaagacaaatttttcgagagaatctaagttcaatt |
113 |
Q |
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| T |
36617419 |
tcatcaaagaaaaaactttaataacaaccaagtgattcggcataagtggttaatggactccgcagaaagacgaatttttcgagagaatctaagttcaatt |
36617320 |
T |
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| Q |
114 |
tttagttagaacaattctttgacatactatacttacccacgat |
156 |
Q |
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| T |
36617319 |
tttagttagaacaattctttgacatactatacttacccacgat |
36617277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 223 - 342
Target Start/End: Complemental strand, 36617210 - 36617091
Alignment:
| Q |
223 |
taataacaatcgaggaaacaacatttcaaagattctgtggcagatgaaagctcctcaaaaacagaaagatttttctttgaaaaattataaataacgaagt |
322 |
Q |
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| T |
36617210 |
taataacaatcgaggaaacaacatttcaaagattctgtggcagatgaaagctcctcaaaaatagaaagatttttctttgaaaaattataaataacgaagt |
36617111 |
T |
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| Q |
323 |
gccggttagtcggttagaac |
342 |
Q |
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|||||||||||||||||||| |
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| T |
36617110 |
gccggttagtcggttagaac |
36617091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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