View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5131_low_14 (Length: 253)
Name: NF5131_low_14
Description: NF5131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5131_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 28816910 - 28817152
Alignment:
| Q |
1 |
cttgagaattagagctaatctgacctggtgagttgtcttaagaattagggctaatctgacctggttgtgtgatgggagaatcatgggcatcagacacagt |
100 |
Q |
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| T |
28816910 |
cttgagaattagagctaatctgacctggtcggttgtcttgagaattacagctaatctgagctggttgtgtgatgggagaatcatgggcatcagacacagt |
28817009 |
T |
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| Q |
101 |
agataacctagaaggccgaatttgaaaggcgcgacgatgaggacgaagatctccttttcgtgagcgcttgcgcctaattgtaatcaaggtcttggcaatc |
200 |
Q |
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| T |
28817010 |
agataacctagaaggccgaatttgaaaggcgcgacgacgaggacgaagatctccttttcgtgagcgcttgcgcctaattgtaatcaaggtcttggcaatc |
28817109 |
T |
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| Q |
201 |
tcagcctccttccctcccttcttctccgttgatttcttctgtg |
243 |
Q |
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| T |
28817110 |
tcagcctccttccctcccttcttctccgttgatttcttctgtg |
28817152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 36 - 151
Target Start/End: Complemental strand, 28817395 - 28817280
Alignment:
| Q |
36 |
tcttaagaattagggctaatctgacctggttgtgtgatgggagaatcatgggcatcagacacagtagataacctagaaggccgaatttgaaaggcgcgac |
135 |
Q |
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|||| ||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||| |||| |
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| T |
28817395 |
tcttgagaattagggctaatctgagctggttttgtgatgggataatcatgggcatcagacacagtaggtaacctagaaggcctaatttgaaaggcccgac |
28817296 |
T |
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| Q |
136 |
gatgaggacgaagatc |
151 |
Q |
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| T |
28817295 |
gacgaggatgaagatc |
28817280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 7145668 - 7145896
Alignment:
| Q |
5 |
agaattagagctaatctgacctggtgagttgtcttaagaattagggctaatctgacctggttgtgtgatgggagaatcatgggcatcagacacagtagat |
104 |
Q |
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|||||||| ||| || ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
7145668 |
agaattagggcttatttgacctggtgagttgtcttgagaattagggctaatcacacctggttgtgtgatgggagagtcatgggcatcagacatagtagat |
7145767 |
T |
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| Q |
105 |
aacctagaaggccgaatttgaaaggcgcgacgatgaggacgaagatctccttttcgtgagcgcttgcgcctaattgtaatcaaggtcttggcaatctcag |
204 |
Q |
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| T |
7145768 |
aacctagaaggccgaaattgaaaggtgcgacgacgaggacgaagatctcc------tgagcgcttattcttaattctaatcaaggtcttggcaatctcag |
7145861 |
T |
|
| Q |
205 |
cctccttccctcccttcttctccgttgatttcttc |
239 |
Q |
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| T |
7145862 |
cctccttacctcccttcttctccattgatttcttc |
7145896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 7145628 - 7145692
Alignment:
| Q |
1 |
cttgagaattagagctaatctgacctggtgagttgtcttaagaattagggctaatctgacctggt |
65 |
Q |
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| T |
7145628 |
cttgagaattagggctaatctgacctggtgcgttgtcttcagaattagggcttatttgacctggt |
7145692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 7145623 - 7145656
Alignment:
| Q |
32 |
gttgtcttaagaattagggctaatctgacctggt |
65 |
Q |
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| T |
7145623 |
gttgtcttgagaattagggctaatctgacctggt |
7145656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 7163000 - 7163036
Alignment:
| Q |
202 |
cagcctccttccctcccttcttctccgttgatttctt |
238 |
Q |
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| T |
7163000 |
cagcctccttccctcccttcatctccattgatttctt |
7163036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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