View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5131_low_15 (Length: 251)
Name: NF5131_low_15
Description: NF5131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5131_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 45304369 - 45304145
Alignment:
| Q |
1 |
aataataatcataaggatctttatccacccactaagcactgattatatgcatnnnnnnnnnnnnnnnttagataactagtaaaaagtagtaacttatatg |
100 |
Q |
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| T |
45304369 |
aataataatcataaggatctttatccacccactaagcactgattatatgcatagagagagaga----ttagataactagtaaaaagtagtaacttatatg |
45304274 |
T |
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| Q |
101 |
cagtaatgcacaaagtaactaggtataggggaaagtaagaaaggaccatagtatagtaggtaagaaaagaaaagaaaaggtttcgttgtagtagtaattt |
200 |
Q |
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| T |
45304273 |
cagcaatgcacaaagtaactaggtataggggaaagtaagaaaggaccat-----agtaggt-----aagaaaagaaaaggtttcgttgtagtagtaattt |
45304184 |
T |
|
| Q |
201 |
gttgggaaatgaaaagggtcctaaaagctgcattacttc |
239 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||| |
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| T |
45304183 |
gttgggaaatgaaaagggtcctaaaagctgcattccttc |
45304145 |
T |
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