View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5131_low_2 (Length: 538)
Name: NF5131_low_2
Description: NF5131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5131_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 11 - 524
Target Start/End: Complemental strand, 35808766 - 35808253
Alignment:
| Q |
11 |
caaagggaagaaactgtgaattctttggcttatgaagctgatgcaaggcttagagaccctgtctatggatgcataggtgctatagcacttttgcaaagga |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35808766 |
caaagggaagaaactgtgaattctttggcttatgaagctgatgcaaggcttagagaccctgtctatggatgcataggtgctatagcacttttgcaaagga |
35808667 |
T |
|
| Q |
111 |
agatggttgaacttcaacatgatcttgccattgcaaaggatcgtctggctcgttgcgctgcggctgctgctactcctacttcttctttttccaatgatat |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35808666 |
agatggttgaacttcaacatgatcttgccattgcaaaggatcgcctggctcgttgcgctgcggctgctgctactcctacttcttctttttccaatgatat |
35808567 |
T |
|
| Q |
211 |
gatgaattcaaatgttagtttgccaccttttcctgagtttttcacttgcagtgacctcagtgataatttaagtcacagttcttcgtctcaatcgtttact |
310 |
Q |
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| T |
35808566 |
gatgaattcaaatgttagtttgccaccttttcctgagtttttcacttgcagtgacttcagtgataatttaagtcacagttcttcgtctcaatcgtttact |
35808467 |
T |
|
| Q |
311 |
cgaaatgaaactgtcgatgatttcgttcaaattccttatatattttaatgctgttatcaccccctttcccttattttgttgtaattgttctgaattgtgt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35808466 |
cgaaatgaaactgtcgatgatttcgttcaaattccttatatattttaatgctgttatcaccccctttcccttattttgttgtaattgttctgaattgtgt |
35808367 |
T |
|
| Q |
411 |
gattaatcaaaaggagtgcttctgttgtatatgctaataaataagaactacatgaatgatttggttttccaatttatgattcctgagttattatagaaac |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35808366 |
gattaatcaaaaggagtgcttctgttgtatatgctaataaataagaactacatgaatgatttggttttccaatttatgattcctgagttattatagaaac |
35808267 |
T |
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| Q |
511 |
tgctagaaaatatg |
524 |
Q |
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|||||||||||||| |
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| T |
35808266 |
tgctagaaaatatg |
35808253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 32036399 - 32036245
Alignment:
| Q |
11 |
caaagggaagaaactgtgaattctttggcttatgaagctgatgcaaggcttagagaccctgtctatggatgcataggtgctatagcacttttgcaaagga |
110 |
Q |
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||||| ||||| || ||||||||| | |||||||||||||| ||||||||||||||||| || || |||||||| ||| | ||||| | |||||||||| |
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| T |
32036399 |
caaagagaagacacagtgaattctcttgcttatgaagctgaagcaaggcttagagacccagtttacggatgcattggttccatagctatgttgcaaagga |
32036300 |
T |
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| Q |
111 |
agatggttgaacttcaacatgatcttgccattgcaaaggatcgtctggctcgttg |
165 |
Q |
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||||| | |||||||| |||||| | |||||||| ||||| ||||| |||||||| |
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| T |
32036299 |
agatgatggaacttcagcatgatttggccattgctaaggaacgtcttgctcgttg |
32036245 |
T |
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