View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5131_low_20 (Length: 203)
Name: NF5131_low_20
Description: NF5131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5131_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 77; Significance: 6e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 91 - 179
Target Start/End: Original strand, 14302383 - 14302471
Alignment:
| Q |
91 |
gatgttaattatgaggatttattaagtgataggagatctacttcagtgtaatttcttgtgtggaaaccttgttgcttgaaggagtaaga |
179 |
Q |
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| T |
14302383 |
gatgttaattatgaggatttattaagtgataggagatctacttcattgtaatttcttgtgtggaaaccttgttgtatgaaggagtaaga |
14302471 |
T |
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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 9629073 - 9629107
Alignment:
| Q |
38 |
tagaccgtgttctacaatatctcaaagccactaca |
72 |
Q |
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| T |
9629073 |
tagaccgtattctacaatatctcaaagccactaca |
9629107 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 179
Target Start/End: Original strand, 44834367 - 44834397
Alignment:
| Q |
149 |
tgtggaaaccttgttgcttgaaggagtaaga |
179 |
Q |
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| T |
44834367 |
tgtggaaaccttgttgcttgaaggagtaaga |
44834397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 4464319 - 4464351
Alignment:
| Q |
44 |
gtgttctacaatatctcaaagccactacaagga |
76 |
Q |
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| T |
4464319 |
gtgttctacaatatctcaaagccactccaagga |
4464351 |
T |
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