View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5131_low_3 (Length: 438)

Name: NF5131_low_3
Description: NF5131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5131_low_3
NF5131_low_3
[»] chr7 (3 HSPs)
chr7 (15-342)||(32196197-32196524)
chr7 (169-257)||(7500917-7501005)
chr7 (108-168)||(7500838-7500898)
[»] chr1 (1 HSPs)
chr1 (169-281)||(43059679-43059791)
[»] chr8 (2 HSPs)
chr8 (169-257)||(10007314-10007402)
chr8 (108-168)||(10007421-10007481)
[»] chr3 (2 HSPs)
chr3 (169-257)||(47615122-47615210)
chr3 (108-168)||(47615229-47615289)
[»] chr6 (2 HSPs)
chr6 (172-242)||(7315865-7315935)
chr6 (108-168)||(7315957-7316017)
[»] chr5 (2 HSPs)
chr5 (169-257)||(18486449-18486537)
chr5 (108-168)||(18486556-18486616)


Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 15 - 342
Target Start/End: Complemental strand, 32196524 - 32196197
Alignment:
Q  15 aacctgtgctaaaccctcactcatggctgaacccgaaaccaacaaccacgaagaacccacattccccaccaaacgcaaacccgatcaagaagaaacccat 114  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32196524 aacctgcgctaaaccctcactcatggctgaacccgaaaccaacaaccacgaagaacccacattccccaccaaacgcaaacccgatcaagaagaaacccat 32196425  T
Q  115 cacctccccaacaaaaaccccaagctaacttccaccaccaccgtagaccaagaatccgaacttcccaccaccgtcaattcttcttccgacgccgttccca 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32196424 cacctccccaacaaaaaccccaagctaacttccaccaccaccgtagaccaagaaaccgaacttcccaccaccgtcaattcttcttccgacgccgttccca 32196325  T
Q  215 acaacgaacccgaaaacaacactgacgacgatgacgaagacgacgaggatgaggagaattccgatgaggagcctgtggtggacaggaagggaaaagggat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32196324 acaacgaacccgaaaacaacactgacgacgatgacgaagacgacgaggatgaggagaattccgatgaggagcctgtggtggacaggaagggaaaagggat 32196225  T
Q  315 tatgcgagatgacaagggaaaagggaaa 342  Q
    ||||||||||||||||||||||||||||    
T  32196224 tatgcgagatgacaagggaaaagggaaa 32196197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 7500917 - 7501005
Alignment:
Q  169 tccgaacttcccaccaccgtcaattcttcttccgacgccgttcccaacaacgaacccgaaaacaacactgacgacgatgacgaagacga 257  Q
    |||||||||||| ||||||||||||  ||||||||||||| |||||||||||||||||||||  |||||||||| || ||||| |||||    
T  7500917 tccgaacttccctccaccgtcaattgctcttccgacgccgatcccaacaacgaacccgaaaatgacactgacgaagacgacgaggacga 7501005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 7500838 - 7500898
Alignment:
Q  108 aacccatcacctccccaacaaaaaccccaagctaacttccaccaccaccgtagaccaagaa 168  Q
    |||||||||||| |||||||||| ||||||||||||  |  ||||||||||||||||||||    
T  7500838 aacccatcaccttcccaacaaaacccccaagctaacaactgccaccaccgtagaccaagaa 7500898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 169 - 281
Target Start/End: Complemental strand, 43059791 - 43059679
Alignment:
Q  169 tccgaacttcccaccaccgtcaattcttcttccgacgccgttcccaacaacgaacccgaaaacaacactgacgacgatgacgaagacgacgaggatgagg 268  Q
    ||||||||| || ||||||||||||  |||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| || ||||    
T  43059791 tccgaacttacctccaccgtcaattgctcttccgacgtcgttcccaacaacgaacccgaaaataacactgacgaagatgacgaagaggacgaagacgagg 43059692  T
Q  269 agaattccgatga 281  Q
    |||||| ||||||    
T  43059691 agaatttcgatga 43059679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 169 - 257
Target Start/End: Complemental strand, 10007402 - 10007314
Alignment:
Q  169 tccgaacttcccaccaccgtcaattcttcttccgacgccgttcccaacaacgaacccgaaaacaacactgacgacgatgacgaagacga 257  Q
    |||||||||||| ||||||||||||  ||||| ||||||| |||||||||||||||||||||  |||| ||||| || ||||| |||||    
T  10007402 tccgaacttccctccaccgtcaattgctcttctgacgccgatcccaacaacgaacccgaaaatgacaccgacgaagacgacgaggacga 10007314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 10007481 - 10007421
Alignment:
Q  108 aacccatcacctccccaacaaaaaccccaagctaacttccaccaccaccgtagaccaagaa 168  Q
    |||||||||||| |||||||||| ||||||||||||  | || |||| |||||||||||||    
T  10007481 aacccatcaccttcccaacaaaacccccaagctaacaactacaaccatcgtagaccaagaa 10007421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 169 - 257
Target Start/End: Complemental strand, 47615210 - 47615122
Alignment:
Q  169 tccgaacttcccaccaccgtcaattcttcttccgacgccgttcccaacaacgaacccgaaaacaacactgacgacgatgacgaagacga 257  Q
    |||||||||||| ||||||||||||  |||| || ||||| |||||||||||||||||||||  |||||||||| || ||||| |||||    
T  47615210 tccgaacttccctccaccgtcaattgctctttcgtcgccgatcccaacaacgaacccgaaaatgacactgacgaagacgacgaggacga 47615122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 47615289 - 47615229
Alignment:
Q  108 aacccatcacctccccaacaaaaaccccaagctaacttccaccaccaccgtagaccaagaa 168  Q
    |||||||||||| |||||||||| ||||||||||||  |  ||||||||||||||||||||    
T  47615289 aacccatcaccttcccaacaaaacccccaagctaacaactgccaccaccgtagaccaagaa 47615229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 7315935 - 7315865
Alignment:
Q  172 gaacttcccaccaccgtcaattcttcttccgacgccgttcccaacaacgaacccgaaaacaacactgacga 242  Q
    ||||||||| ||||||||||||  ||||||||| ||| |||||||||||||||||||||  ||||||||||    
T  7315935 gaacttccctccaccgtcaattgctcttccgacaccgatcccaacaacgaacccgaaaatgacactgacga 7315865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 7316017 - 7315957
Alignment:
Q  108 aacccatcacctccccaacaaaaaccccaagctaacttccaccaccaccgtagaccaagaa 168  Q
    |||||||||||| ||||| |||| ||||||| ||||  |  ||||||||||||||||||||    
T  7316017 aacccatcaccttcccaaaaaaacccccaaggtaacaactgccaccaccgtagaccaagaa 7315957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 169 - 257
Target Start/End: Complemental strand, 18486537 - 18486449
Alignment:
Q  169 tccgaacttcccaccaccgtcaattcttcttccgacgccgttcccaacaacgaacccgaaaacaacactgacgacgatgacgaagacga 257  Q
    |||||||||||| ||||||||||||  |||| || ||||| |||||||||||||| ||||||  |||||||||| || ||||| |||||    
T  18486537 tccgaacttccctccaccgtcaattgctctttcgtcgccgatcccaacaacgaactcgaaaatgacactgacgaagacgacgaggacga 18486449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 18486616 - 18486556
Alignment:
Q  108 aacccatcacctccccaacaaaaaccccaagctaacttccaccaccaccgtagaccaagaa 168  Q
    |||||||||||| |||||||||| ||||||||||||  |  ||||||||||||||||||||    
T  18486616 aacccatcaccttcccaacaaaacccccaagctaacaactgccaccaccgtagaccaagaa 18486556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University