View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5131_low_4 (Length: 398)
Name: NF5131_low_4
Description: NF5131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5131_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 31047359 - 31046979
Alignment:
| Q |
1 |
aaccaacagcaataaaccaagagacatggaaccaactcttaggcaacaacaactgggaaaccttattaaacccactagacctcaatctccgcaacctcat |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31047359 |
aaccaacaacaataaaccaagagacatggaaccaactcttaggcaacaacaactgggaaaccttattaaacccactagacctcaatctccgcaacctcat |
31047260 |
T |
|
| Q |
101 |
cctccgttgtggtgacttcatacaaacaacctacgactctttcaacaacgaccaaaactctatctactgcggttcaagccgttttggcaaaacctcattc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31047259 |
cctccgttgtggtgacttcatacaaacaacctacgactctttcaacaacgaccaaaactctatctactgcggttcaagccgttatggcaaaacctcattc |
31047160 |
T |
|
| Q |
201 |
tttaacaaagtcatgcttgaaaaccctacacactacactgttgtttctttcctttacgctacagcacgtgtttctgttcctgaagcttttattcttcact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31047159 |
tttaacaaagtcatgcttgaaaaccctacacactacactgttgtttctttcctttatgctacagcacgtgtttctgttcctgaagcttttattcttcact |
31047060 |
T |
|
| Q |
301 |
cactttcacgtgagagttgggaccgtgagtctaactggattggttacatcgctgttagttccgatgaacggagtagagagt |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31047059 |
cactttcacgtgagagttgggaccgtgagtctaactggattggttacatcgctgttagttccgatgaacggagtagagagt |
31046979 |
T |
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