View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5131_low_9 (Length: 329)
Name: NF5131_low_9
Description: NF5131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5131_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 14 - 308
Target Start/End: Original strand, 40111653 - 40111947
Alignment:
| Q |
14 |
aaatacacatactttcgagtggaaccaaggatccacccacactaataaacaatgtatacgttctattaaatatccaaaataaccccatggaaaaatccaa |
113 |
Q |
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| T |
40111653 |
aaatacacatactttcgagtggaaccaaggatccacccacactaataaacaatgtatacgttctattaaatatccaaaataaccccatggaaaaatccaa |
40111752 |
T |
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| Q |
114 |
aatttttcatatggtattgagagatacaaataatacagacttctttcttctacaaaagccacgattagaaaagcatattaagattaatcaacaatgaatt |
213 |
Q |
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| T |
40111753 |
aatttttcatatggtatttagagatacaaataatacagacttctttcttctacaaaagccacgattagaaaagcatattaagattaatcaacaatgaatt |
40111852 |
T |
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| Q |
214 |
ggtccaagtggtaaggaactcaaatcccttaagcatgtcgttaattggatcatgcttatggagaaaaaatctgttgggcggggagaatccacctt |
308 |
Q |
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| T |
40111853 |
gttccaagtggtaaggaactcaaatcccttaagcatgtcgttaattggatcatgcgtatggagaaaaaatctgttgggcggggagaatccacctt |
40111947 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 43460320 - 43460271
Alignment:
| Q |
202 |
caacaatgaattggtccaagtggtaaggaactcaaatcccttaagcatgt |
251 |
Q |
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| T |
43460320 |
caacaatggattggtccaagtggtaagggacttgaaccccttaagcatgt |
43460271 |
T |
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