View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5132-Insertion-6 (Length: 531)
Name: NF5132-Insertion-6
Description: NF5132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5132-Insertion-6 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 193 - 385
Target Start/End: Original strand, 25506036 - 25506228
Alignment:
| Q |
193 |
tagggttacattgagaaatggaggattgcctttgataccaagttcaatatgcttggactgaatcgtacagtaaaatagctaggaatgaacatttggagga |
292 |
Q |
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| T |
25506036 |
tagggttacattgagaaatggaggattgcctttgataccaagttcaatatgcttggactgaatcgtacagtaaaatagcttggaatgaacatttggagga |
25506135 |
T |
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| Q |
293 |
agattgatgtaaatattgacctcatctaaggtttgatcccattcgaacactttttgacctaaattgaagaagaatgagtttgtttgtttgatt |
385 |
Q |
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| T |
25506136 |
agattgatgtaaatattgacctcatctaaagtttgatcccattcgaacactttttgacctaaattgaagaagaatgagtttgtttgtttgatt |
25506228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 4 - 167
Target Start/End: Original strand, 25505848 - 25506011
Alignment:
| Q |
4 |
aacacaaaaacagtcacaaatatcaatatattagttaaagcaaaaacttttacatacctaaagtccaaaaagaagaatctgtcttcaccggagaagtaag |
103 |
Q |
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| T |
25505848 |
aacacaaaaacagtcacaaatatgaatatattagttaaagcaaaaacttttacatacctaaagtccaaaaagaagaatctgtcttcaccggagaagtaag |
25505947 |
T |
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| Q |
104 |
atcatgctgaaaaatcaaatcaaatcacacacatcagcaacaattatgacatattatgcaacaa |
167 |
Q |
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| T |
25505948 |
atcatgctgaaaaatcaaatcaaatcacacacatcagcaacaattatgacatattatgcaacaa |
25506011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 431 - 504
Target Start/End: Original strand, 25506274 - 25506347
Alignment:
| Q |
431 |
gtaccgttgtggaggaatatgtgacgcttttctggtgccaatttttctgccatttttgtaaactcgtctttgat |
504 |
Q |
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| T |
25506274 |
gtaccgttgtggaggaatatgtgacgcttttctggtgccaatttttctgccatttttgtaaactcgtctttgat |
25506347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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