View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5132-Insertion-7 (Length: 170)
Name: NF5132-Insertion-7
Description: NF5132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5132-Insertion-7 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 84; Significance: 3e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 29448345 - 29448436
Alignment:
| Q |
8 |
tcaatagtcaaattctctccttcattatgtgttattttgtttctaaaaataagtcacacgttattcacctattccaattttctcactattag |
99 |
Q |
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| T |
29448345 |
tcaatagtcaaattctctccttcattatgtgttattttgtttctaaaaataagtcacacgttattcacccattccaattttttcactattag |
29448436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 29449179 - 29449235
Alignment:
| Q |
114 |
cttaaataacacggtcattcctctcaaattgcatttttgcatcagttttgtatttaa |
170 |
Q |
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| T |
29449179 |
cttaaataacacggtcattcctctcaaattgcatttttgcatcagttttgtatttaa |
29449235 |
T |
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Target: chr2 (Bit Score: 81; Significance: 2e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 74 - 170
Target Start/End: Complemental strand, 35671299 - 35671204
Alignment:
| Q |
74 |
acctattccaattttctcactattagtttcttcctattaacttaaataacacggtcattcctctcaaattgcatttttgcatcagttttgtatttaa |
170 |
Q |
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| T |
35671299 |
acctattccaattttctcactattagtttcttcctactaacttaaataacatggtcattcctctcaaattgca-ttttgcatcagttttgtatttaa |
35671204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 35672743 - 35672675
Alignment:
| Q |
8 |
tcaatagtcaaattctctccttcattatgtgttattttgtttctaaaaataagtcacacgttattcacc |
76 |
Q |
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| T |
35672743 |
tcaatagtcaatttctctccttcattatgtgttattttgttcctaaaaataagtcacacgttattcacc |
35672675 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 2270710 - 2270618
Alignment:
| Q |
9 |
caatagtcaaattctctccttcattatgtgttatttt-gtttctaaaaataagtcacacgttattcacctattccaattttctcactattagttt |
102 |
Q |
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| T |
2270710 |
caatagtcaaattctccccttcattatgtgttattttggttcctaaaaactag--ccacgttattcacctatgccaatcctctcacaatcagttt |
2270618 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 31281334 - 31281269
Alignment:
| Q |
37 |
tgttattttgtttctaaaaataagtcacacgttattcacctattccaattttctcactattagttt |
102 |
Q |
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| T |
31281334 |
tgttattttgttcctaaaatcaagccacacgttagccacctatttcaattctctcacaattagttt |
31281269 |
T |
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