View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5132_high_11 (Length: 237)
Name: NF5132_high_11
Description: NF5132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5132_high_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 2387768 - 2387988
Alignment:
| Q |
1 |
gctaatactatagtatttgtataaagtagtaggtcagctaaatttccagccacgtgtaatattcattgcaaataaagtttgagtaaagctttataacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2387768 |
gctaatactatagtatttgtataaagtagttggtcagctaaatttccagccacgtgtaatattcattgcagataaagtttgagtaaagctttataacaaa |
2387867 |
T |
|
| Q |
101 |
tatattttgataaaagnnnnnnnnntgaaatgattttgcaatgattataaaaatgcattgtctatcttcacaatcaagtaaccaactataaatttaaaat |
200 |
Q |
| |
|
|||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2387868 |
tatattatgataaaagaaaaaaaaatgaaatgatcttgcaatgattataaaaatgcattgtctatcttcacaatcaagtaaccaactataaatttaaaat |
2387967 |
T |
|
| Q |
201 |
aattctgttttttaatgttag |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
2387968 |
aattctgttttttaatgttag |
2387988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 2387612 - 2387680
Alignment:
| Q |
38 |
ctaaatttccagccacgtgtaatattcattgcaaataaagtttgagtaaagctttataacaaatatatt |
106 |
Q |
| |
|
|||||||||||||||||| || || |||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2387612 |
ctaaatttccagccacgtatattagtcattgcagataaagtttgagttaagctttataacaaatatatt |
2387680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University