View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5132_low_10 (Length: 264)

Name: NF5132_low_10
Description: NF5132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5132_low_10
NF5132_low_10
[»] chr1 (2 HSPs)
chr1 (7-241)||(17442354-17442586)
chr1 (35-202)||(21545495-21545660)
[»] chr5 (2 HSPs)
chr5 (60-164)||(21943409-21943513)
chr5 (107-154)||(20117121-20117168)
[»] chr7 (4 HSPs)
chr7 (107-202)||(5882036-5882131)
chr7 (115-164)||(8040290-8040339)
chr7 (60-95)||(24578430-24578465)
chr7 (120-165)||(42575233-42575279)
[»] chr4 (3 HSPs)
chr4 (125-190)||(7504292-7504357)
chr4 (56-100)||(3797331-3797375)
chr4 (56-100)||(4216456-4216500)


Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 7 - 241
Target Start/End: Complemental strand, 17442586 - 17442354
Alignment:
Q  7 gtagcataggccttcagcggattagcagtgattgtagcataggccttgagtggattagtagaaatgtatatcattaacaactatataatgatttagtgag 106  Q
    |||||||||| ||| |||||||||| ||||||||||||| ||||||| || || |||||||||||||||||||||||||||||||||||||||||||||     
T  17442586 gtagcataggtcttgagcggattagtagtgattgtagcacaggccttaagcgggttagtagaaatgtatatcattaacaactatataatgatttagtga- 17442488  T
Q  107 atataatcataagctcaatgtcttttatattattttatataatgaaaaattgttgaatatgcaaagacacgaaattatttcaagcagtttgttgaattcc 206  Q
     |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  17442487 -tataatcataagctcaatgtcttttatattattttatataataaaaaattgttgaatatgcaaagacacgaaattatttcaagcagtttgttgaattct 17442389  T
Q  207 aaaacaattcttattatataacaaaaacatggttc 241  Q
    ||||||||| |||||||||||||||||||||||||    
T  17442388 aaaacaatttttattatataacaaaaacatggttc 17442354  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 35 - 202
Target Start/End: Original strand, 21545495 - 21545660
Alignment:
Q  35 tgattgtagcataggccttga-gtggattagtagaaatgtatatcattaacaactatataatgatttagtgagatataatcataagctcaatgtctttta 133  Q
    ||||||||| |||| |||||| | |||||||| ||||||||||||||||||||||| |||||||  || |  |||||||| ||||||||  |||||||||    
T  21545495 tgattgtagtatagaccttgaagcggattagttgaaatgtatatcattaacaactacataatga--tattttgatataattataagctcgttgtctttta 21545592  T
Q  134 tattattttatataatgaaaaattgttgaatatgcaaagacacgaaattatttcaagcagtttgttgaa 202  Q
    ||||| |||||| |||||||| |||||||||   || ||||| ||||||| | ||||||||||||||||    
T  21545593 tatta-tttatacaatgaaaatttgttgaatccacagagacatgaaattagtgcaagcagtttgttgaa 21545660  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 164
Target Start/End: Original strand, 21943409 - 21943513
Alignment:
Q  60 attagtagaaatgtatatcattaacaactatataatgatttagtgagatataatcataagctcaatgtcttttatattattttatataatgaaaaattgt 159  Q
    |||||| ||||||||||| |||||||| ||||| |||||||  |   ||||||| |||| |||  ||||||||||||||||||||||||| |||| ||||    
T  21943409 attagttgaaatgtatattattaacaaatatattatgattttttttaatataattataaactcgttgtcttttatattattttatataataaaaatttgt 21943508  T
Q  160 tgaat 164  Q
    |||||    
T  21943509 tgaat 21943513  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 154
Target Start/End: Original strand, 20117121 - 20117168
Alignment:
Q  107 atataatcataagctcaatgtcttttatattattttatataatgaaaa 154  Q
    ||||||| |||| |||||| ||||||||||||||||||||| ||||||    
T  20117121 atataattataacctcaatctcttttatattattttatatattgaaaa 20117168  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 202
Target Start/End: Complemental strand, 5882131 - 5882036
Alignment:
Q  107 atataatcataagctcaatgtcttttatattattttatataatgaaaaattgttgaatatgcaaagacacgaaattatttcaagcagtttgttgaa 202  Q
    ||||||| ||| ||||| |||||||| ||||||||| ||||||||||| |||||||||   |||||| | ||||| | | |||||||| |||||||    
T  5882131 atataattatatgctcattgtcttttgtattattttgtataatgaaaatttgttgaatccacaaagatatgaaatcagtgcaagcagtatgttgaa 5882036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 8040290 - 8040339
Alignment:
Q  115 ataagctcaatgtcttttatattattttatataatgaaaaattgttgaat 164  Q
    ||||||||| ||||||||||||||||||| ||| | ||||||||||||||    
T  8040290 ataagctcattgtcttttatattattttacatatttaaaaattgttgaat 8040339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 24578465 - 24578430
Alignment:
Q  60 attagtagaaatgtatatcattaacaactatataat 95  Q
    |||||| |||||||||||||||||||||||||||||    
T  24578465 attagttgaaatgtatatcattaacaactatataat 24578430  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 165
Target Start/End: Original strand, 42575233 - 42575279
Alignment:
Q  120 ctcaatgtcttttatattattttata-taatgaaaaattgttgaata 165  Q
    |||| ||||||||||||||||||||| || |||||||||||||||||    
T  42575233 ctcattgtcttttatattattttatattattgaaaaattgttgaata 42575279  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 7504357 - 7504292
Alignment:
Q  125 tgtcttttatattattttatataatgaaaaattgttgaatatgcaaagacacgaaattatttcaag 190  Q
    ||||||||||| |||||||||||||||||| ||||| |||   |||||||| ||||| ||||||||    
T  7504357 tgtcttttatactattttatataatgaaaatttgttaaatccacaaagacatgaaatcatttcaag 7504292  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 3797331 - 3797375
Alignment:
Q  56 gtggattagtagaaatgtatatcattaacaactatataatgattt 100  Q
    |||||||||| |||||||||||  |||||||||| ||||||||||    
T  3797331 gtggattagttgaaatgtatattgttaacaactacataatgattt 3797375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 4216456 - 4216500
Alignment:
Q  56 gtggattagtagaaatgtatatcattaacaactatataatgattt 100  Q
    |||||||||| |||||||||||  |||||||||| ||||||||||    
T  4216456 gtggattagttgaaatgtatattgttaacaactacataatgattt 4216500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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