View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5132_low_11 (Length: 251)
Name: NF5132_low_11
Description: NF5132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5132_low_11 |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 88 - 251
Target Start/End: Original strand, 36732435 - 36732598
Alignment:
| Q |
88 |
taaaacaaattttgagaataatttttaaagatctgctaatccaactagtgtcatccatgccttctctagcaccatcgaagactgcaccaattatcttcat |
187 |
Q |
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| T |
36732435 |
taaaacaaattttgagaataatttttaaagatctgctaatccgactagtgtcatccatgccttctctagcaccatcgaagactgcaccaattatcttcat |
36732534 |
T |
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| Q |
188 |
aatggtccttgacacactaaaacaactttcattggttggaagcgttcacatgacggatgggtta |
251 |
Q |
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| T |
36732535 |
aatgatccttgacatactaaaacaactttcattggttggaagcgttctcatgaaggatgggtta |
36732598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 36731609 - 36731655
Alignment:
| Q |
44 |
atttaagtacttaagttatatctccacgtctagctcagcatacttaa |
90 |
Q |
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| T |
36731609 |
atttaagtacttaagttatatctctacgtctagctcatcatacttaa |
36731655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 88 - 251
Target Start/End: Complemental strand, 41550578 - 41550415
Alignment:
| Q |
88 |
taaaacaaattttgagaataatttttaaagatctgctaatccaactagtgtcatccatgccttctctagcaccatcgaagactgcaccaattatcttcat |
187 |
Q |
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| T |
41550578 |
taaaacaatttttgaggataattttcaaagaccagctaatccaactagtgtcattcaggccttctctagcactatcgaagattgcaccaataatcttctt |
41550479 |
T |
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| Q |
188 |
aatggtccttgacacactaaaacaactttcattggttggaagcgttcacatgacggatgggtta |
251 |
Q |
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| T |
41550478 |
caaggtcctcggcacactgaaacaattttcattggttggaagcatcctcaggagggatgggtta |
41550415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 247
Target Start/End: Original strand, 37752240 - 37752368
Alignment:
| Q |
122 |
gctaatccaactagtgtcatccatgccttctctagcaccatcgaagactgcaccaatta---tcttcataatggtccttgacacactaaaacaactttca |
218 |
Q |
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| T |
37752240 |
gctaatccaactagtgtcattcaaatgttctctagcactatcgaagattgcaccaataatcttcttcagaatggtcctcaacacactgaaacggttttca |
37752339 |
T |
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| Q |
219 |
ttggttggaagcgttcacatgacggatgg |
247 |
Q |
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| T |
37752340 |
ttggttggaagtgtcctcatgagggatgg |
37752368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 29515562 - 29515506
Alignment:
| Q |
122 |
gctaatccaactagtgtcatccatgccttctctagcaccatcgaagactgcaccaat |
178 |
Q |
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| T |
29515562 |
gctaatccaactagtgtcatccaagccttctctagaactttcgaagactacaccaat |
29515506 |
T |
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