View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5132_low_12 (Length: 245)
Name: NF5132_low_12
Description: NF5132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5132_low_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 245
Target Start/End: Complemental strand, 38589078 - 38588846
Alignment:
| Q |
13 |
attcttgtggtgggtgttgccatcggtgttgtcgtcgttgttaacaaaaaggatgatcctgcattagcagcacacgaaaagaatgtacaaaccatgtgtc |
112 |
Q |
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| T |
38589078 |
attcttgtggtgggtgttgccatcggtgttgtcgtcgttgttaacaaaaaggatgatcctgcattagcagcacacgaaaagaatgtacaaaccatgtgtc |
38588979 |
T |
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| Q |
113 |
aaacaactgaagatcaaaaactttgtcatgacactcttggctccgtgaaacctgctaattcctctgacccaacagcttatttagcagctgcagttcaggc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38588978 |
aaacaactgaagatcaaaaactttgtcatgacactcttggctccgtgaaacctgctaattcctctgacccaacagcttatttagcagctgcagttcaggc |
38588879 |
T |
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| Q |
213 |
aagtgcccaaagtgttatccttgtgttgaatat |
245 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
38588878 |
aagtgcccaaagtgttatccttgcgttgaatat |
38588846 |
T |
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