View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5132_low_15 (Length: 222)
Name: NF5132_low_15
Description: NF5132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5132_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 40103681 - 40103867
Alignment:
| Q |
19 |
gcagggagctgccacgacatgttatgttgcactccacccaagtgtaaaaggtgtaactgggaagtactttgtggattgcaatgaattcaagccaagtgca |
118 |
Q |
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| T |
40103681 |
gcagggagctgccacgacatgttatgttgcactccacccaagtgtaaaaggtgtaactgggaagtactttgtggattgcaatgaattcaagccaagtgca |
40103780 |
T |
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| Q |
119 |
tatgcaaaaaataaactcttagcaaagaaactttgggatttcagcaacaagttgatcaattcaatttcaaaagcttgattgaccaca |
205 |
Q |
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| T |
40103781 |
tatgcaaaaaataaactcttagcaaagaaactttgggatttcagcaacaagttgatcaattcaatttcaaaagcttgattgaccaca |
40103867 |
T |
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Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 29517211 - 29517032
Alignment:
| Q |
19 |
gcagggagctgccacgacatgttatgttgcactccacccaagtgtaaaaggtgtaactgggaagtactttgtggattgcaatgaattcaagccaagtgca |
118 |
Q |
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|||||||||||| || ||||| |||||||| || || ||||| | ||||| |||||||||||||||||| ||||||| ||||| || | |||||||| |
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| T |
29517211 |
gcagggagctgcaacaacatgctatgttgctcttcatccaagcttgaaaggagtaactgggaagtactttttggattgtaatgagtttcaaccaagtgct |
29517112 |
T |
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| Q |
119 |
tatgcaaaaaataaactcttagcaaagaaactttgggatttcagcaacaagttgatcaattcaatttcaaaagcttgatt |
198 |
Q |
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| ||| |||| ||| |||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
29517111 |
tttgcgtcaaatggactattaggaagaaaactttgggattttagcaacaagttgatcaattcaatttcaaagtcttgatt |
29517032 |
T |
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