View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5132_low_16 (Length: 214)
Name: NF5132_low_16
Description: NF5132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5132_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 6e-73; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 34873911 - 34873724
Alignment:
| Q |
9 |
acatcatcattcaacaatgtacacgaacaagcttcaagaactatgtcnnnnnnnctcatatcctcttctaaaataccaaacaacccatgaaggaccactg |
108 |
Q |
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| T |
34873911 |
acatcatcattcaacaatgtacacgaacaagcttcaagaactatgtcaaaaaaactcataccctcttcccgaataccaaacaacccatgaaggaccactg |
34873812 |
T |
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| Q |
109 |
cacaatcctcttttctcatcaactgttaccgttaagtccatttccttcacttcaccagaactagcaagcacccttaaggcatctcaag |
196 |
Q |
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| T |
34873811 |
cacaatcctcttttctcatcaaccgttaccgttaagtccatttccttcacttcaccagaacctgcaagcacccttaaggcatctcaag |
34873724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 34871711 - 34871900
Alignment:
| Q |
9 |
acatcatcattcaacaatgtacacgaacaa--gcttcaagaactatgtcnnnnnnnctcatatcctcttctaaaataccaaacaacccatgaaggaccac |
106 |
Q |
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| T |
34871711 |
acatcatcattcaacaatgtacaagaacaaaagcttcaagaactatgtcaaaaaaactcttacccacttcccaaataccaaacaacccatgaaggaccac |
34871810 |
T |
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| Q |
107 |
tgcacaatcctcttttctcatcaactgttaccgttaagtccatttccttcacttcaccagaactagcaagcacccttaaggcatctcaag |
196 |
Q |
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| T |
34871811 |
tgcacaatcctcttttttcatcaaccgttaccgttaagtctatttccttcacttcaccaaaaccagcaagcacccttaaggcatctcaag |
34871900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 9911036 - 9911206
Alignment:
| Q |
16 |
cattcaacaatgtacacgaacaagcttcaagaactatgtcnnnnnnnctcatatcctcttctaaaataccaaacaacccatgaaggaccactgcacaatc |
115 |
Q |
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| T |
9911036 |
cattcaacaatgtacaagaccaagcttcaagaactatgtcaaaaaaattcataccctcttcccgaataccaaacaacccgtgaaggaccaccacacaatt |
9911135 |
T |
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| Q |
116 |
ctcttttctcatcaactgttaccgttaagtccatttccttcacttcaccagaactagcaagcacccttaag |
186 |
Q |
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| T |
9911136 |
ctcgtttctcaacaaccgttactgttaactccatttccttctcttctcctgaaccagcacgcaccattaag |
9911206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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