View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5132_low_2 (Length: 421)
Name: NF5132_low_2
Description: NF5132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5132_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 1169639 - 1169977
Alignment:
| Q |
18 |
gattcgataagttgtggaaat--gtagtccatttcactaaagtcaaccctgatgatttttcttttccttccttttatttccttcgaaaacaatcccnnnn |
115 |
Q |
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| T |
1169639 |
gattcgataagttgtggaaatatgtagtccatttcactaaactcaaccctgatgatttttcttttccttccttttatttccttcgaaaacaatcccaaaa |
1169738 |
T |
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| Q |
116 |
nnnnnn-tgcaatttctctcacccttccttcaaattcttcccttactttccttcttcatttttcaagtaataccttagagtatgtttggatgaattaatt |
214 |
Q |
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| T |
1169739 |
aaaaaaatgcaatttctctcacccttccttcaaattcttcccttactttccttcttcatttttcaagtaataccttagagtgtgtttggatgaattaatt |
1169838 |
T |
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| Q |
215 |
aaagttttaggcaattcaaatgttttaatttattctgattattcaaattcatttgtttggataaagtgataaaattctaagcatagcacataaatgatca |
314 |
Q |
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| T |
1169839 |
aaagttttaggcaattcaaatgttttaatttattctcattattcaaattcatttgtttggataaagtgataaaattctaagcatagcacataaatcatca |
1169938 |
T |
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| Q |
315 |
aagcatttagaaaaatgtggtgtttcaagagaatgtcct |
353 |
Q |
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| T |
1169939 |
aagcatttagaaaaatatggtgtttcaagagaatgtcct |
1169977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 1162829 - 1162902
Alignment:
| Q |
122 |
tgcaatttctctcacccttccttcaaattcttcccttactttccttcttcatttttcaagtaataccttagagt |
195 |
Q |
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| T |
1162829 |
tgcaatttctctcatcctcttatcaaatccttcctttacttaccctcttcatttttcaaataataccttggagt |
1162902 |
T |
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