View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5132_low_5 (Length: 362)

Name: NF5132_low_5
Description: NF5132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5132_low_5
NF5132_low_5
[»] chr7 (5 HSPs)
chr7 (4-359)||(36732584-36732939)
chr7 (217-264)||(6205407-6205454)
chr7 (217-264)||(6792779-6792826)
chr7 (139-206)||(30335740-30335807)
chr7 (9-166)||(6205199-6205356)
[»] chr5 (1 HSPs)
chr5 (9-343)||(41550089-41550424)
[»] chr1 (12 HSPs)
chr1 (14-307)||(37752367-37752660)
chr1 (4-308)||(30901701-30902016)
chr1 (66-290)||(5321467-5321690)
chr1 (128-291)||(9886377-9886540)
chr1 (217-262)||(19552755-19552800)
chr1 (217-264)||(7797868-7797915)
chr1 (217-264)||(8055142-8055189)
chr1 (217-264)||(28705316-28705363)
chr1 (217-264)||(46019186-46019233)
chr1 (217-264)||(46077336-46077383)
chr1 (217-264)||(49572822-49572869)
chr1 (217-264)||(33695937-33695984)
[»] chr8 (4 HSPs)
chr8 (9-343)||(29515112-29515443)
chr8 (217-260)||(11596891-11596934)
chr8 (217-264)||(24785153-24785200)
chr8 (217-264)||(35195792-35195839)
[»] chr6 (3 HSPs)
chr6 (76-184)||(6262016-6262124)
chr6 (220-343)||(6262130-6262254)
chr6 (223-343)||(20679185-20679305)
[»] scaffold0012 (1 HSPs)
scaffold0012 (217-264)||(109091-109138)
[»] chr4 (1 HSPs)
chr4 (217-264)||(54908301-54908348)


Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 4 - 359
Target Start/End: Original strand, 36732584 - 36732939
Alignment:
Q  4 atgacggatgggttaaactcaattgtgatagggcatttaaagagaatggaaatcgtgtggggtgtggcggtcttcttcgggatactaatgacaaatggct 103  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||| ||||||||    
T  36732584 atgaaggatgggttaaactcaattgtaatagggcatttaaagagaatggaaattgtgtggggtgttgcggtcttcttcaggatactaatgataaatggct 36732683  T
Q  104 caaataatttgtgcgcaaaattgaagtttgtgatgctctgcatgcaaaaatgtggggtgtgtatttgggtttggagctagcatgacgtgatggagtttca 203  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36732684 caaataatttgtgcgcaagattgaagtttgtgatgctctgcatgcagaaatgtggggtgtgtatttgggtttggagctagcatgacgtgatggagtttca 36732783  T
Q  204 catatccgtctgaaaagtgattcaaaattgtttattgacatggttacaaataattgcaagactagttgaacgaccacttcgttgattcaacgtatcaaaa 303  Q
    ||||| |||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  36732784 catattcgtctagaaagtgattcaaaattgtttattaacatggttacaaataattgcaagactagttggacgaccacttcgttgattcagcgtatcaaaa 36732883  T
Q  304 atctattaaccgtagttgacactttgaggttcatcatactcagcgataagacaata 359  Q
    ||||||||  |||||||||||||||||||||||||||||| |||||||||||||||    
T  36732884 atctattagacgtagttgacactttgaggttcatcatacttagcgataagacaata 36732939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 6205407 - 6205454
Alignment:
Q  217 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 264  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  6205407 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 6205454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 6792826 - 6792779
Alignment:
Q  217 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 264  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  6792826 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 6792779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 30335740 - 30335807
Alignment:
Q  139 ctctgcatgcaaaaatgtggggtgtgtatttgggtttggagctagcatgacgtgatggagtttcacat 206  Q
    |||| ||||||||||| | |||| ||||||| ||||| |||||||| ||||||||| || ||||||||    
T  30335740 ctcttcatgcaaaaattttgggtttgtatttcggtttagagctagcttgacgtgatagaatttcacat 30335807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 6205199 - 6205356
Alignment:
Q  9 ggatgggttaaactcaattgtgatagggcatttaaagagaatggaaatcgtgtggggtgtggcggtcttcttcgggatactaatgacaaatggctcaaat 108  Q
    |||||| | ||||||||||||||| | || |  |||||||||||| ||||   ||| ||||| ||| | ||||||||| ||||||  | |||| |||||     
T  6205199 ggatggatcaaactcaattgtgatggagcttgcaaagagaatggagatcgctcgggttgtggaggtttacttcgggatgctaatggtagatggatcaaag 6205298  T
Q  109 aatttgtgcgcaaaattgaagtttgtgatgctctgcatgcaaaaatgtggggtgtgta 166  Q
      ||||| ||||| ||||  || ||||||||||| |||||| | ||||||||| ||||    
T  6205299 gttttgtccgcaagattggcgtgtgtgatgctcttcatgcagagatgtggggtatgta 6205356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 9 - 343
Target Start/End: Complemental strand, 41550424 - 41550089
Alignment:
Q  9 ggatgggttaaactcaattgtgatagggcatttaaagagaatggaaatcgtgtggggtgtggcggtcttcttcgggatactaatgacaaatggctcaaat 108  Q
    |||||||||||||||||||||||| ||||||  ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||     
T  41550424 ggatgggttaaactcaattgtgatggggcatgcaaagagaatggaaatcgtgcggggtgtggcggtcttcttcgggacactaatgacaagtggctcaaag 41550325  T
Q  109 aatttgtgcgcaaaattgaagtttgtgatgctctgcatgcaaaaatgtggggtgtgtatttgggtttggagctagcatgacgtgatggagtttcacatat 208  Q
     ||||||||||||||||| |||||| ||||||||||||||| ||||||||||| | ||||| || ||||||||||| || || ||||||||||||||| |    
T  41550324 gatttgtgcgcaaaattggagtttgcgatgctctgcatgcagaaatgtggggtttatatttagggttggagctagcttggcgggatggagtttcacatct 41550225  T
Q  209 ccgtctgaaaagtgattcaaaattgtttattgacatggttacaaataattgcaagactagttgaacgaccacttcgttgattcaacgtatcaaaaatcta 308  Q
    | || || || | |||||||||||| ||||||||||||||||||| || |||| ||||| | | |||||| |||||||||| |  ||||||| ||||||     
T  41550224 ctgtgtggaaggcgattcaaaattgcttattgacatggttacaaacaactgcaggactaatgggacgaccccttcgttgatgcggcgtatcagaaatctt 41550125  T
Q  309 tt-aaccgtagttgacactttgaggttcatcatact 343  Q
    ||  | |||||||| ||| |||||||||||||||||    
T  41550124 ttggatcgtagttggcacgttgaggttcatcatact 41550089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 14 - 307
Target Start/End: Original strand, 37752367 - 37752660
Alignment:
Q  14 ggttaaactcaattgtgatagggcatttaaagagaatggaaatcgtgtggggtgtggcggtcttcttcgggatactaatgacaaatggctcaaataattt 113  Q
    |||||||||||||| |||| || | |  ||| ||||||||||||||||||| |||||| |||||||| ||||||||||||  | |||| |||||  ||||    
T  37752367 ggttaaactcaattatgatgggacgtgcaaatagaatggaaatcgtgtgggttgtggcagtcttctttgggatactaatggtagatggttcaaaagattt 37752466  T
Q  114 gtgcgcaaaattgaagtttgtgatgctctgcatgcaaaaatgtggggtgtgtatttgggtttggagctagcatgacgtgatggagtttcacatatccgtc 213  Q
    |||||||| ||||  |||||||||||||| |||||| ||||||||||| ||||||| ||||| |||||||| || ||||||||| |||||||| || ||     
T  37752467 gtgcgcaagattggtgtttgtgatgctctacatgcagaaatgtggggtttgtattttggtttagagctagcttggcgtgatggaatttcacatctctgta 37752566  T
Q  214 tgaaaagtgattcaaaattgtttattgacatggttacaaataattgcaagactagttgaacgaccacttcgttgattcaacgtatcaaaaatct 307  Q
    || | ||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||| |||| ||||||   ||||||| ||||||    
T  37752567 tggagagtgattcaaaattgtttattgacatggttacaaataattgcaagactaatgggacgaccccttcattgatttggcgtatcagaaatct 37752660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 4 - 308
Target Start/End: Original strand, 30901701 - 30902016
Alignment:
Q  4 atgacggatgggttaaactcaattgtgatagggcatttaaagagaatggaaatcgtgtggg-----gtgt--ggcggtcttcttcgggatactaatgaca 96  Q
    |||| ||||| |||||||| ||||||||| ||||||  |||||||||||||||| || |||     |||   ||||||||||||||||||| ||||| ||    
T  30901701 atgagggatgagttaaactaaattgtgatggggcatgcaaagagaatggaaatcatgcgggaagcggtggacggcggtcttcttcgggatagtaatggca 30901800  T
Q  97 aatggctcaaataatttgtgcgcaaaattgaagtttgtgatgctctgcatgcaaa--aatgtggggtgtgtatttgggtttggagctagcatgacgtgat 194  Q
    |||| |||||| |||||||| |||| |||| || |||||||||||||||| ||||  ||  |||||| | ||| |||||||||||||||| || ||||||    
T  30901801 aatgactcaaagaatttgtgtgcaagattggagattgtgatgctctgcatacaaattaaattggggtttatatctgggtttggagctagcctggcgtgat 30901900  T
Q  195 ggagtttcacatatccgtctgaaaagtgattcaaaattg--tttattgacatggttacaaataattgcaagactagttgaacgaccacttcgttgattca 292  Q
    |||||||||||| || || || || |||||| |||||||  | ||||||||||||||||||||||||||||||||   | ||||||  |||||||||||     
T  30901901 ggagtttcacatctctgtgtggaaggtgattaaaaattgcttatattgacatggttacaaataattgcaagactaacgggacgacccattcgttgattcg 30902000  T
Q  293 acgtatcaaaaatcta 308  Q
     ||||||| |||||||    
T  30902001 gcgtatcagaaatcta 30902016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 66 - 290
Target Start/End: Original strand, 5321467 - 5321690
Alignment:
Q  66 tgtggcggtcttcttcgggatactaatgacaaatggctcaaataatttgtgcgcaaaattgaagtttgtgatgctctgcatgcaaaaatgtggggtgtgt 165  Q
    ||||| ||||||||||| || ||| |||||| ||||||||||  |||||| ||||| |||| ||||||||||||||| |||||| |||| || ||| |||    
T  5321467 tgtggtggtcttcttcgcgacactgatgacagatggctcaaaggatttgtacgcaagattggagtttgtgatgctcttcatgcagaaatttgaggtttgt 5321566  T
Q  166 atttgggtttggagctagcatgacgtgatggagtttcacatatccgtctgaaaagtgattcaaaattgtttattgacatggttacaaataattgcaagac 265  Q
    ||| || |||||||||||| ||| |||||||| |||||||| ||  | || ||||||| ||||||||| ||||||| |||||||||||||||||||||||    
T  5321567 attagg-tttggagctagcttgaagtgatggaatttcacatctctatgtggaaagtgactcaaaattgcttattgatatggttacaaataattgcaagac 5321665  T
Q  266 tagttgaacgaccacttcgttgatt 290  Q
    || | |||||||| |||||||||||    
T  5321666 taatggaacgaccccttcgttgatt 5321690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 128 - 291
Target Start/End: Complemental strand, 9886540 - 9886377
Alignment:
Q  128 agtttgtgatgctctgcatgcaaaaatgtggggtgtgtatttgggtttggagctagcatgacgtgatggagtttcacatatccgtctgaaaagtgattca 227  Q
    ||||||||||| | || ||||  ||||||| ||| ||||||| ||||| |||||||| || | ||||||| |||||||| |  || || ||||||||       
T  9886540 agtttgtgatgttttgtatgctgaaatgtgaggtctgtatttcggtttagagctagcttgtcatgatggaatttcacatctttgtgtggaaagtgatcat 9886441  T
Q  228 aaattgtttattgacatggttacaaataattgcaagactagttgaacgaccacttcgttgattc 291  Q
     ||||||| ||||||||||||| | ||||||||||||||| | | |||||| || |||||||||    
T  9886440 gaattgttgattgacatggttaaacataattgcaagactaatgggacgacccctccgttgattc 9886377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 19552800 - 19552755
Alignment:
Q  217 aaagtgattcaaaattgtttattgacatggttacaaataattgcaa 262  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||    
T  19552800 aaagtgattcaaaattagttattgacatggttacaaataattgcaa 19552755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 7797868 - 7797915
Alignment:
Q  217 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 264  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  7797868 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 7797915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 8055189 - 8055142
Alignment:
Q  217 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 264  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  8055189 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 8055142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 28705316 - 28705363
Alignment:
Q  217 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 264  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  28705316 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 28705363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 46019233 - 46019186
Alignment:
Q  217 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 264  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  46019233 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 46019186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 46077336 - 46077383
Alignment:
Q  217 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 264  Q
    |||||||||||||||||||||||| |||| | ||||||||||||||||    
T  46077336 aaagtgattcaaaattgtttattgtcatgataacaaataattgcaaga 46077383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 49572869 - 49572822
Alignment:
Q  217 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 264  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  49572869 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 49572822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 33695984 - 33695937
Alignment:
Q  217 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 264  Q
    |||||||||||||| || ||||||||||||| ||||| ||||||||||    
T  33695984 aaagtgattcaaaaatgcttattgacatggtaacaaaaaattgcaaga 33695937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 9 - 343
Target Start/End: Complemental strand, 29515443 - 29515112
Alignment:
Q  9 ggatgggttaaactcaattgtgatagggcatttaaagagaatggaaatcgtgtggggtgtggcggtcttcttcgggatactaatgacaaatggctcaaat 108  Q
    |||||| ||||||||||||||||| |||| |  |||||||||||||||| ||||||||| || |||||||| |  || ||||||| ||||| |||||||     
T  29515443 ggatggattaaactcaattgtgat-gggcgtgcaaagagaatggaaatcatgtggggtgcggtggtcttctcctagacactaatggcaaattgctcaaag 29515345  T
Q  109 aatttgtgcgcaaaattgaagtttgtgatgctctgcatgcaaaaatgtggggtgtgtatttgggtttggagctagcatgacgtgatggagtttcacatat 208  Q
     ||||||| |||| |||| |||||| ||||||||||||||| |||||||||||   |||| | | ||||||||||| |||||  |||||||||||||| |    
T  29515344 gatttgtgtgcaagattggagtttgcgatgctctgcatgcagaaatgtggggt---tattcgaggttggagctagcttgacggaatggagtttcacatct 29515248  T
Q  209 ccgtctgaaaagtgattcaaaattgtttattgacatggttacaaataattgcaagactagttgaacgaccacttcgttgattcaacgtatcaaaaatcta 308  Q
      || || || | |||||||||||| |||||||||| |||| |||||| |||| ||||| | | |||| | |||||||||| | |||||||| ||||||     
T  29515247 atgtgtggaaggcgattcaaaattgcttattgacatagttagaaataactgcaggactaatgggacgatcccttcgttgatgcgacgtatcagaaatctt 29515148  T
Q  309 tt-aaccgtagttgacactttgaggttcatcatact 343  Q
    ||  |||||||||| ||| ||||  |||||||||||    
T  29515147 ttggaccgtagttggcacattgaaattcatcatact 29515112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 11596934 - 11596891
Alignment:
Q  217 aaagtgattcaaaattgtttattgacatggttacaaataattgc 260  Q
    ||||||||||||||||| |||||||||||| |||||||||||||    
T  11596934 aaagtgattcaaaattgcttattgacatggatacaaataattgc 11596891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 24785153 - 24785200
Alignment:
Q  217 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 264  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  24785153 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 24785200  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 35195839 - 35195792
Alignment:
Q  217 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 264  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  35195839 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 35195792  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 76 - 184
Target Start/End: Original strand, 6262016 - 6262124
Alignment:
Q  76 ttcttcgggatactaatgacaaatggctcaaataatttgtgcgcaaaattgaagtttgtgatgctctgcatgcaaaaatgtggggtgtgtatttgggttt 175  Q
    ||||||| ||||||||||||||||| |||||   |||||||||||| |||| |||| ||||||||||||||||| ||| |||| ||  ||||||||||||    
T  6262016 ttcttcgagatactaatgacaaatgactcaagggatttgtgcgcaagattggagttcgtgatgctctgcatgcagaaacgtggtgttggtatttgggttt 6262115  T
Q  176 ggagctagc 184  Q
    |||||||||    
T  6262116 ggagctagc 6262124  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 220 - 343
Target Start/End: Original strand, 6262130 - 6262254
Alignment:
Q  220 gtgattcaaaattgtttattgacatggttacaaataattgcaagactagttgaacgaccacttcgttgattcaacgtatcaaaaatctatt-aaccgtag 318  Q
    ||||||||||| || |||||||||||||| |||||||||||||||||| | | |||||| ||| |||||||| || ||||| |||||||||  |||||||    
T  6262130 gtgattcaaaactgcttattgacatggtttcaaataattgcaagactaatggtacgaccccttggttgattcgacatatcagaaatctattcgaccgtag 6262229  T
Q  319 ttgacactttgaggttcatcatact 343  Q
    ||| ||| |||||||| ||||||||    
T  6262230 ttggcacgttgaggtttatcatact 6262254  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 343
Target Start/End: Complemental strand, 20679305 - 20679185
Alignment:
Q  223 attcaaaattgtttattgacatggttacaaataattgcaagactagttgaacgaccacttcgttgattcaacgtatcaaaaatctatta-accgtagttg 321  Q
    ||||||||||| | ||| |||||||||||||||||||||||| ||   | |||| | ||| ||||||||  |||||||  |||||| || | ||||||||    
T  20679305 attcaaaattgct-attaacatggttacaaataattgcaagattaacgggacgatccctttgttgattcggcgtatcaggaatctactagatcgtagttg 20679207  T
Q  322 acactttgaggttcatcatact 343  Q
     ||| ||||||||||| |||||    
T  20679206 gcacgttgaggttcattatact 20679185  T

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Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 109138 - 109091
Alignment:
Q  217 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 264  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  109138 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 109091  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 54908348 - 54908301
Alignment:
Q  217 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 264  Q
    ||||||||||||||||| ||||||| ||| | ||||||||||||||||    
T  54908348 aaagtgattcaaaattgcttattgatatgataacaaataattgcaaga 54908301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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