View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5132_low_7 (Length: 330)
Name: NF5132_low_7
Description: NF5132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5132_low_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 2712700 - 2712371
Alignment:
| Q |
1 |
cattttgtcaatctgaagatgaatcagaaaagatcaagatgaagcaaagttctgcatgatgatgttaacatgggatcataaatataggctttttaggttt |
100 |
Q |
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| T |
2712700 |
cattttgtcaatctgaagatgaatcagaaaagatcaagatgaagcaaagttctgcatgatgatgttaacatgggatcataaatataggctttttaggttt |
2712601 |
T |
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| Q |
101 |
gactctcatgcgcttaagttttaacataatgacattaaccatcaaaatcgttgtagttgtcaaatttatgtatcaaaaatatattttacgttttatcaat |
200 |
Q |
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| T |
2712600 |
gactctcatgagcttaagttttaacataatgacattaaccatcaaaatcgttgtagttgtcaaatttatgtatcaaaaatatattttatgttttatcaat |
2712501 |
T |
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| Q |
201 |
gtgcgcgtggaaaactttatatactgcaaactaaaagaagtctctgtttaaagaagtaagggagcataaatgcattatatattttcagttttcaatacca |
300 |
Q |
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| T |
2712500 |
gtgcgcgtggaaaactttatatactgcaaactaaaagaagtctctgtttaaagaagtaagggagcataaatgcattatatattttcagttttcactacca |
2712401 |
T |
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| Q |
301 |
actgtaccagactttgctctagctttcact |
330 |
Q |
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| T |
2712400 |
actgtcccagactttgctctagctttcact |
2712371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 249 - 326
Target Start/End: Original strand, 7327017 - 7327093
Alignment:
| Q |
249 |
taaagaagtaagggagcataaatgcattatatattttcagttttcaataccaactgtaccagactttgctctagcttt |
326 |
Q |
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| T |
7327017 |
taaagaagtaagggagcataaatgcat-atatattttcagttttcactatcaactgtcccagactttgctctagcttt |
7327093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7326761 - 7326798
Alignment:
| Q |
1 |
cattttgtcaatctgaagatgaatcagaaaagatcaag |
38 |
Q |
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| T |
7326761 |
cattttgtcaatctgaagatgaatcaaaaaagatcaag |
7326798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 39433710 - 39433673
Alignment:
| Q |
1 |
cattttgtcaatctgaagatgaatcagaaaagatcaag |
38 |
Q |
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| T |
39433710 |
cattttgtcaatctgaagatgaatcaaaaaaggtcaag |
39433673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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