View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5132_low_8 (Length: 290)

Name: NF5132_low_8
Description: NF5132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5132_low_8
NF5132_low_8
[»] chr7 (11 HSPs)
chr7 (19-277)||(4631379-4631637)
chr7 (30-274)||(4667396-4667634)
chr7 (143-205)||(4637378-4637440)
chr7 (143-205)||(4711584-4711646)
chr7 (143-205)||(4864446-4864508)
chr7 (141-218)||(4654004-4654081)
chr7 (143-207)||(4696702-4696766)
chr7 (144-207)||(4644214-4644277)
chr7 (149-218)||(4783353-4783422)
chr7 (149-218)||(4815782-4815851)
chr7 (141-205)||(4673224-4673288)
[»] chr4 (1 HSPs)
chr4 (30-277)||(18925144-18925385)


Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 277
Target Start/End: Complemental strand, 4631637 - 4631379
Alignment:
Q  19 caacatcgtattcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaaccaaccttacccttctcaaagactttaatccctcgct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631637 caacatcgtattcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaaccaaccttacccttctcaaagactttaatccctcgct 4631538  T
Q  119 ttggctttcaaacgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631537 ttggctttcaaacgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 4631438  T
Q  219 acaaaccaattaaatggtttagctttcatcaacggaattgagattgtgtctatgccttc 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631437 acaaaccaattaaatggtttagctttcatcaacggaattgagattgtgtctatgccttc 4631379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 30 - 274
Target Start/End: Complemental strand, 4667634 - 4667396
Alignment:
Q  30 tcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaaccaaccttacccttctcaaagactttaatccctcgctttggctttcaa 129  Q
    ||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  || || ||||||||| |||    
T  4667634 tcgtatcaaaactttgaaacctccaacgctctcttcacagtcaaagtaggaaccaaccttacccttctcaaagactttagcccttcactttggcttccaa 4667535  T
Q  130 acgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaatt 229  Q
    |||||| ||||||||||||||||||||||||||| || |     | |   ||||| ||| || ||||||||||||||||      |||||||||||||||    
T  4667534 acgataacaagacaatcaccaaagaatattgcatccataccaaacaaggggagaaactagacgtaactttcattcccaa------aaacacaaaccaatt 4667441  T
Q  230 aaatggtttagctttcatcaacggaattgagattgtgtctatgcc 274  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||    
T  4667440 aaatgcttttgctttcatcaacggaattgagattgtgtctatgcc 4667396  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 4637440 - 4637378
Alignment:
Q  143 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 205  Q
    |||||||||||||||||||||||||||    |||||||| ||| |||||||||||||||||||    
T  4637440 aatcaccaaagaatattgcatacaaatcaaaccaaatgaaaagttaaacataactttcattcc 4637378  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 4711584 - 4711646
Alignment:
Q  143 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 205  Q
    ||||||||||||||||||||| |||||    |||||||||||||||| |||||||||||||||    
T  4711584 aatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattcc 4711646  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 4864508 - 4864446
Alignment:
Q  143 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 205  Q
    ||||||||||||||||||||| |||||     |||||||||||||||||||||||||||||||    
T  4864508 aatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattcc 4864446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 4654081 - 4654004
Alignment:
Q  141 acaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 218  Q
    ||||||||||||||||||||||| ||| |    || ||| |||||||||||||||||||||||||||| || ||||||    
T  4654081 acaatcaccaaagaatattgcatccaagtccaaccgaataagaagctaaacataactttcattcccaacaacacaaac 4654004  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 4696702 - 4696766
Alignment:
Q  143 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattccca 207  Q
    ||||||||||||||||||||| ||||     |||||||||||| |||||||||||||||||||||    
T  4696702 aatcaccaaagaatattgcattcaaaccaaaccaaatgagaagttaaacataactttcattccca 4696766  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 4644277 - 4644214
Alignment:
Q  144 atcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattccca 207  Q
    |||| |||||| |||||||| ||||||    |||||||||||||||||||||||||||||||||    
T  4644277 atcatcaaagagtattgcatccaaattaaaacaaatgagaagctaaacataactttcattccca 4644214  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 4783353 - 4783422
Alignment:
Q  149 caaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 218  Q
    ||||||||||| ||| |||||    ||||| ||||||||||||||||||||||||||||| || ||||||    
T  4783353 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaac 4783422  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 4815782 - 4815851
Alignment:
Q  149 caaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 218  Q
    ||||||||||| ||| |||||    ||||| ||||||||||||||||||||||||||||| || ||||||    
T  4815782 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaac 4815851  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 4673288 - 4673224
Alignment:
Q  141 acaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 205  Q
    |||||||||||||||| ||| || |||||    || ||||||||||||||||||| |||||||||    
T  4673288 acaatcaccaaagaattttgtatccaaatcaagcccaatgagaagctaaacataaatttcattcc 4673224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 277
Target Start/End: Original strand, 18925144 - 18925385
Alignment:
Q  30 tcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaaccaaccttacccttctcaaagactttaatccctcgctttggctttcaa 129  Q
    ||||||||| || ||||||||| | ||||||||||||| |||||||| ||||||||  | ||||||||||| |||||||| ||| | |||||||||  ||    
T  18925144 tcgtatcaaaactttgaaaccttcgacgccctcttcaccgtcaaagttggaaccaatgtcacccttctcaatgactttaaccccgcactttggcttcaaa 18925243  T
Q  130 acgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaatt 229  Q
    |||||| |||||||||||| ||||| || ||| |  ||||    |||| ||||||| |||| ||||||||||||||   ||| ||   || ||| |||      
T  18925244 acgataacaagacaatcacgaaagagtactgcctcaaaatgaaaccaactgagaagttaaatataactttcattcc---aaacac---cataaatcaacc 18925337  T
Q  230 aaatggtttagctttcatcaacggaattgagattgtgtctatgccttc 277  Q
    ||| | ||  ||||||||||||||||||||||| ||||| ||||||||    
T  18925338 aaaggcttatgctttcatcaacggaattgagatcgtgtccatgccttc 18925385  T

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