View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5133_high_11 (Length: 225)
Name: NF5133_high_11
Description: NF5133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5133_high_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 31365049 - 31364835
Alignment:
| Q |
11 |
cacagacacacgaatacaaaaacaactcacagatacatgatacatgttgggttatatgttagctaaaaagaaaaagaataccaaacaaagcatagacaat |
110 |
Q |
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| T |
31365049 |
cacaaacacacgaatacaaaaacaactcacagatacatgatacatgttgggttatatgttagctaaaaagaaaaagaataccaaacaaagcatagacaat |
31364950 |
T |
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| Q |
111 |
accacgttaattgtggctgtgataataaaaccaaggacattctttatggacacaactcaactttctcttcctctttcattgcaatgcagacacaaaggtc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31364949 |
accacgttaattgtggctgtgataataaaaccaaggacattctttatggacacaactcaactttctcttcctctttcattgcaatgcagacacaaaggtc |
31364850 |
T |
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| Q |
211 |
catttacttttcttc |
225 |
Q |
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||||||||||||||| |
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| T |
31364849 |
catttacttttcttc |
31364835 |
T |
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