View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5133_high_3 (Length: 447)
Name: NF5133_high_3
Description: NF5133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5133_high_3 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 9 - 447
Target Start/End: Complemental strand, 44809207 - 44808770
Alignment:
| Q |
9 |
agcacagaagcatgaatgagttgaagatggtggtggtggaagaagagagagtgatataactgccattgaaattgaaattgaaat------agaattatga |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44809207 |
agcacagaagcatgaatgagttgaagatggtggtggtggaagaagagagagtgatataactgccattgaaattgaaattgaaattgaaatagaattatga |
44809108 |
T |
|
| Q |
103 |
agaaaagtatgatatgttcatgattttaacgcccgcttgaattgttagtgggtaaaatgttaaaaagaatcgggttttatgggttctgctt------gct |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
44809107 |
agaaaagtatgatatgttcatgattttaacgcccgcttgaattgttagtgggtaaaatgttaaaaagaatcgggttttatgggttctgcttctgcttgct |
44809008 |
T |
|
| Q |
197 |
gaactggactggactactggtattggtacatacataccagagaggaagacactcactgggacccacaactaccagataataagttgtggcttattgctag |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44809007 |
gaactggactggactactggtattggtacatacataccagagaggaagacactcactgggacccacaactaccagataa---gttgtggcttattgctag |
44808911 |
T |
|
| Q |
297 |
cctcgtcttctttctgcaaatttatttttctctacatactcaaataatgtatgtaatttattagtcaccaaaacaatttgagacaattttcatataattg |
396 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44808910 |
cctcgtcttctttctgcaaatttattcttctctacatactcaaataatgtatgtaatttattagtcaccaaaaca----------attttcatataattg |
44808821 |
T |
|
| Q |
397 |
attcttatcaaaaactaatttataattttgatactaatgacttattttagt |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44808820 |
attcttatcaaaaactaatttataattttgatactaatgacttattttagt |
44808770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University