View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5133_high_4 (Length: 395)
Name: NF5133_high_4
Description: NF5133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5133_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 44808457 - 44808704
Alignment:
| Q |
18 |
ataccctttgcggaggagtggcttgaacataggttgtctcggtagttgacgttaataatccgatgttaatgatcctcctcatttttatgatttaaaatag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44808457 |
ataccctttgcggaggagtggcttgaacataggttgtctcggtatttgatgttaataatccgatgttaatgatcctcctcatttttatgatttaaaatag |
44808556 |
T |
|
| Q |
118 |
tgacttaattaataataatgaaaaataaatatgtagtttgtattgaatcgacatcttaaccataaatacaataaagatcatgag--nnnnnnnncttctg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||| |
|
|
| T |
44808557 |
tgacttaattaataataatgaaaaataaatatgtagtttgtattgaatcgacatcttaaccataaatataataaggatcatgagttttttttttcttctg |
44808656 |
T |
|
| Q |
216 |
aaaaataccttggtgagtcgtagaaatttttgatagttttaagtatta |
263 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||| |||||||| |
|
|
| T |
44808657 |
aaaaataccttggtcagtcgtagaaagttttgatagtttaaagtatta |
44808704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 291 - 395
Target Start/End: Original strand, 44808706 - 44808810
Alignment:
| Q |
291 |
tttttgtagaatatgatatgtagagtttgaatatgcaacttttgataagaatctaatataaaaaactaaaataagtcattaggatcaaaattataaatta |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44808706 |
tttttgtagaatatgatatgtagagtttgaatatgcaacttttgataagaatctaatataaaaaactaaaataagtcattagtatcaaaattataaatta |
44808805 |
T |
|
| Q |
391 |
gtttt |
395 |
Q |
| |
|
||||| |
|
|
| T |
44808806 |
gtttt |
44808810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 34743536 - 34743472
Alignment:
| Q |
51 |
ttgtctcggtagttgacgttaataatccgatgttaatgatcctcctcatttttatgatttaaaat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34743536 |
ttgtctcggtagttgacgttaataatccgatgttaatgatcctcctcatttttatgatttaaaat |
34743472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 172
Target Start/End: Original strand, 29726216 - 29726249
Alignment:
| Q |
139 |
aaaataaatatgtagtttgtattgaatcgacatc |
172 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
29726216 |
aaaataaatatgtagtttgtattgaaccgacatc |
29726249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 16952492 - 16952539
Alignment:
| Q |
79 |
gatgttaatgatcctcctcatttttatgatttaaaatagtgacttaatt |
127 |
Q |
| |
|
|||||||||||||||||||||||||| || || |||||||||||||||| |
|
|
| T |
16952492 |
gatgttaatgatcctcctcatttttaaga-ttgaaatagtgacttaatt |
16952539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University