View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5133_high_6 (Length: 323)
Name: NF5133_high_6
Description: NF5133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5133_high_6 |
 | |
|
| [»] scaffold0332 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 46443025 - 46443186
Alignment:
| Q |
9 |
gagatgaagtgttgccgccacaggagagagagtgggaggttcgcggcggcggtgccgctggtctgggtggctgagtttcttcttctctttttcagttgtt |
108 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46443025 |
gagatgaagtattgccgccacaggagagagagtgggaggttcgcggcggcggtgccgctggtctgggtggctgagtttcttcttctctttttcagttgtt |
46443124 |
T |
|
| Q |
109 |
gagttttttggcgagaataaaaggtaaggga--gggtgaaaagtatataacaactaaggggt |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
46443125 |
gagttttttggcgagaataaaaggtaagggaatgggtgaaaagtatataacaactaaggggt |
46443186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 210 - 257
Target Start/End: Original strand, 46444031 - 46444078
Alignment:
| Q |
210 |
tttaaaaactaatgaatagtacataaaacttatttatttatataagtt |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46444031 |
tttaaaaactaatgaatagtacataaaacttatttatttatataagtt |
46444078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0332 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0332
Description:
Target: scaffold0332; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 14771 - 14828
Alignment:
| Q |
199 |
cataaactacatttaaaaactaatgaatagtacataaaa-cttatttatttatataag |
255 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||| ||||||||||| |||||| |
|
|
| T |
14771 |
cataaactacatttaaaaacttatgaataatacataaaagcttatttatttgtataag |
14828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 34102711 - 34102761
Alignment:
| Q |
199 |
cataaactacatttaaaaactaatgaatagtacataaaa-cttatttattt |
248 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||| ||||||||||| |
|
|
| T |
34102711 |
cataaactacatttaaaaactcatgaataatacataaaagcttatttattt |
34102761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 4326238 - 4326288
Alignment:
| Q |
199 |
cataaactacatttaaaaactaatgaatagtacataaa-acttatttattt |
248 |
Q |
| |
|
||||||||||||||| ||||| ||||||| |||||||| |||||||||||| |
|
|
| T |
4326238 |
cataaactacatttataaacttatgaataatacataaagacttatttattt |
4326288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 248
Target Start/End: Complemental strand, 10054442 - 10054392
Alignment:
| Q |
199 |
cataaactacatttaaaaactaatgaatagtacataaaa-cttatttattt |
248 |
Q |
| |
|
||||||||||||||| ||||| ||||||| ||||||||| ||||||||||| |
|
|
| T |
10054442 |
cataaactacatttacaaacttatgaataatacataaaagcttatttattt |
10054392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 248
Target Start/End: Complemental strand, 30534041 - 30533991
Alignment:
| Q |
199 |
cataaactacatttaaaaactaatgaatagtacataaaa-cttatttattt |
248 |
Q |
| |
|
||||||||||||||| ||||| ||||||| ||||||||| ||||||||||| |
|
|
| T |
30534041 |
cataaactacatttacaaacttatgaataatacataaaagcttatttattt |
30533991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 51409732 - 51409782
Alignment:
| Q |
199 |
cataaactacatttaaaaactaatgaatagtacata-aaacttatttattt |
248 |
Q |
| |
|
||||||||||||||| ||||| ||||||| |||||| |||||||||||||| |
|
|
| T |
51409732 |
cataaactacatttacaaacttatgaataatacatacaaacttatttattt |
51409782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 2757096 - 2757144
Alignment:
| Q |
199 |
cataaactacatttaaaaactaatgaatagtacataaaacttatttattt |
248 |
Q |
| |
|
|||||||||| |||||||||| || |||| |||||||||||||||||||| |
|
|
| T |
2757096 |
cataaactac-tttaaaaacttataaataatacataaaacttatttattt |
2757144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University