View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5133_low_1 (Length: 613)

Name: NF5133_low_1
Description: NF5133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5133_low_1
NF5133_low_1
[»] chr3 (25 HSPs)
chr3 (63-602)||(13022326-13022833)
chr3 (63-602)||(33088625-33089137)
chr3 (306-602)||(20810673-20810967)
chr3 (63-272)||(53120098-53120305)
chr3 (66-264)||(38436282-38436478)
chr3 (336-567)||(26962394-26962626)
chr3 (82-264)||(20810997-20811177)
chr3 (485-602)||(38436635-38436752)
chr3 (93-233)||(26962640-26962774)
chr3 (455-602)||(53119829-53119977)
chr3 (65-263)||(26929298-26929487)
chr3 (456-602)||(6025464-6025608)
chr3 (122-202)||(11777219-11777299)
chr3 (526-602)||(21494027-21494103)
chr3 (490-566)||(26928939-26929015)
chr3 (122-207)||(6025717-6025802)
chr3 (390-450)||(38436570-38436632)
chr3 (302-361)||(38436507-38436566)
chr3 (63-92)||(3448721-3448750)
chr3 (121-201)||(21493714-21493795)
chr3 (527-596)||(25023640-25023709)
chr3 (205-241)||(2616960-2616996)
chr3 (205-237)||(3476371-3476403)
chr3 (205-237)||(4117129-4117161)
chr3 (205-237)||(54271255-54271287)
[»] chr7 (20 HSPs)
chr7 (63-599)||(24528659-24529174)
chr7 (63-382)||(28291851-28292171)
chr7 (336-602)||(33226648-33226905)
chr7 (63-263)||(7357920-7358118)
chr7 (63-259)||(33226916-33227104)
chr7 (63-201)||(9973915-9974053)
chr7 (456-602)||(9973763-9973909)
chr7 (419-496)||(28292173-28292251)
chr7 (504-602)||(47761927-47762025)
chr7 (63-207)||(47762353-47762488)
chr7 (63-105)||(10437405-10437447)
chr7 (63-105)||(10451115-10451157)
chr7 (552-602)||(28292247-28292297)
chr7 (196-237)||(32212137-32212176)
chr7 (205-237)||(12935020-12935052)
chr7 (205-237)||(16538852-16538884)
chr7 (205-237)||(16626778-16626810)
chr7 (205-237)||(17496036-17496068)
chr7 (205-237)||(17557146-17557178)
chr7 (205-237)||(43893478-43893510)
[»] chr1 (21 HSPs)
chr1 (336-602)||(26650693-26650960)
chr1 (63-380)||(38734602-38734910)
chr1 (63-264)||(26650437-26650635)
chr1 (63-264)||(13891390-13891589)
chr1 (63-263)||(39746683-39746880)
chr1 (63-237)||(31289367-31289538)
chr1 (457-602)||(13891112-13891258)
chr1 (63-198)||(14582397-14582532)
chr1 (63-271)||(10106619-10106826)
chr1 (161-264)||(19406288-19406389)
chr1 (526-600)||(39747002-39747076)
chr1 (63-148)||(5602179-5602264)
chr1 (64-271)||(12179279-12179484)
chr1 (506-598)||(10106405-10106496)
chr1 (350-399)||(19406465-19406514)
chr1 (455-548)||(19406518-19406611)
chr1 (422-467)||(39746947-39746992)
chr1 (394-430)||(13891256-13891292)
chr1 (538-602)||(19422599-19422663)
chr1 (213-253)||(14724903-14724943)
chr1 (205-237)||(48246151-48246183)
[»] chr6 (26 HSPs)
chr6 (63-474)||(19478512-19478922)
chr6 (63-264)||(17289616-17289812)
chr6 (337-577)||(17289889-17290132)
chr6 (62-263)||(10485685-10485882)
chr6 (65-271)||(17280873-17281072)
chr6 (438-602)||(11956332-11956497)
chr6 (440-600)||(17281193-17281357)
chr6 (390-481)||(10485472-10485563)
chr6 (537-602)||(19478449-19478514)
chr6 (84-160)||(14450626-14450702)
chr6 (122-207)||(11956127-11956212)
chr6 (485-602)||(3902575-3902691)
chr6 (62-207)||(3902862-3903001)
chr6 (63-204)||(29326239-29326374)
chr6 (143-270)||(28696922-28697050)
chr6 (485-602)||(3902217-3902334)
chr6 (526-602)||(29325840-29325915)
chr6 (336-384)||(29325929-29325977)
chr6 (526-602)||(29326015-29326090)
chr6 (146-264)||(13660382-13660497)
chr6 (549-600)||(10485374-10485425)
chr6 (204-237)||(6727955-6727988)
chr6 (174-262)||(22713923-22714009)
chr6 (205-237)||(34142717-34142749)
chr6 (205-237)||(34155333-34155365)
chr6 (205-237)||(34376400-34376432)
[»] chr8 (14 HSPs)
chr8 (63-359)||(19430517-19430817)
chr8 (63-359)||(19566666-19566966)
chr8 (336-588)||(31030844-31031087)
chr8 (63-399)||(19435909-19436259)
chr8 (63-399)||(19572058-19572408)
chr8 (397-602)||(19430313-19430516)
chr8 (397-602)||(19566462-19566665)
chr8 (65-376)||(33616075-33616385)
chr8 (63-264)||(31031145-31031340)
chr8 (63-264)||(13584755-13584959)
chr8 (477-602)||(33616395-33616520)
chr8 (420-471)||(19435858-19435909)
chr8 (420-471)||(19572007-19572058)
chr8 (524-598)||(33848312-33848387)
[»] chr4 (18 HSPs)
chr4 (336-602)||(10120108-10120375)
chr4 (63-263)||(10119815-10120013)
chr4 (363-602)||(24490333-24490573)
chr4 (63-264)||(24490679-24490873)
chr4 (63-245)||(653592-653773)
chr4 (461-602)||(10120461-10120603)
chr4 (438-602)||(30564042-30564207)
chr4 (488-602)||(10318455-10318569)
chr4 (522-598)||(653346-653422)
chr4 (121-229)||(10318245-10318350)
chr4 (485-561)||(15498977-15499054)
chr4 (336-383)||(653512-653558)
chr4 (473-561)||(15451517-15451607)
chr4 (193-237)||(9763442-9763484)
chr4 (205-237)||(13711306-13711338)
chr4 (205-241)||(15451783-15451819)
chr4 (485-565)||(17359835-17359915)
chr4 (205-237)||(41393796-41393828)
[»] chr2 (8 HSPs)
chr2 (63-264)||(42915148-42915347)
chr2 (63-264)||(5089663-5089863)
chr2 (527-602)||(5089579-5089654)
chr2 (452-532)||(42914999-42915079)
chr2 (174-263)||(39959759-39959846)
chr2 (127-208)||(43111538-43111619)
chr2 (124-241)||(44683721-44683836)
chr2 (17-57)||(14328959-14328999)
[»] scaffold0132 (2 HSPs)
scaffold0132 (63-236)||(2430-2601)
scaffold0132 (63-236)||(10390-10561)
[»] scaffold0011 (4 HSPs)
scaffold0011 (63-271)||(2204-2411)
scaffold0011 (63-228)||(7501-7665)
scaffold0011 (336-602)||(1867-2122)
scaffold0011 (453-602)||(7348-7497)
[»] chr5 (12 HSPs)
chr5 (63-271)||(13581990-13582197)
chr5 (63-272)||(14374701-14374908)
chr5 (111-271)||(7805651-7805809)
chr5 (522-598)||(13582406-13582482)
chr5 (506-588)||(7805383-7805464)
chr5 (336-383)||(7805528-7805575)
chr5 (124-253)||(9361773-9361898)
chr5 (537-588)||(14374447-14374498)
chr5 (297-363)||(13582233-13582298)
chr5 (205-237)||(24776238-24776270)
chr5 (528-600)||(31987029-31987101)
chr5 (205-237)||(36254453-36254485)
[»] scaffold0067 (2 HSPs)
scaffold0067 (62-264)||(33313-33507)
scaffold0067 (488-602)||(33645-33759)
[»] scaffold0594 (1 HSPs)
scaffold0594 (205-237)||(8713-8745)
[»] scaffold0166 (1 HSPs)
scaffold0166 (205-237)||(13165-13197)
[»] scaffold0060 (1 HSPs)
scaffold0060 (205-237)||(37591-37623)


Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 63 - 602
Target Start/End: Complemental strand, 13022833 - 13022326
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatca 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||| ||    
T  13022833 actagttaaatctagtgagaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtgagccacacca 13022734  T
Q  163 actagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatata 262  Q
    | |||||||| |||||||||||| |||||||||||||||||  ||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13022733 attagaaagtgtttatataagggaagagtgacctccaaggg--tgtgaccttggggtacccacttttgtgaacgggtgaacgcttacaaaaagatatata 13022636  T
Q  263 tcgcgcgcgagaccgaaccgaaccgaacagggccggtcgtggatcgtgggtggaaaataaaatatannnnnnngtcacttgaaaatgataaattaattat 362  Q
       |||||||  |||  |||  |       |||||| | ||| |||||||| |||||| |||||||       |||||||||||||||||||||||||||    
T  13022635 --ccgcgcgacgccg--ccgtcc-------ggccgggcttgggtcgtgggtagaaaatgaaatata-ttttttgtcacttgaaaatgataaattaattat 13022548  T
Q  363 ttaattaatctaatcattatccaaaaacgctacgcgtaacaagtaaggttgttacgatccgacccgatccaaaacgagtatccagaagcttccggatata 462  Q
    |||||||||||||||||||||| ||  |||||||||||||||||                   ||||||||||||||||||||||||| |||| ||||||    
T  13022547 ttaattaatctaatcattatccgaacgcgctacgcgtaacaagt-------------------ccgatccaaaacgagtatccagaagtttccagatata 13022467  T
Q  463 tccaattaagaaac-aaaacgcatttgcttaaggattaagcagacttaatccctaagaaactcgttttttgttacgaactcctcctataaaaggagagct 561  Q
    |||||||||||||| ||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13022466 tccaattaagaaacaaaaacgcgttcgcttaaggattaagcagacttaatccctaagtaactcgttttttgttacgaactcctcctataaaaggagagct 13022367  T
Q  562 cgcccccctcattcttcacatcgaatttcgcagttgatgat 602  Q
    ||| |||||||||||| ||||||||||||||||||||||||    
T  13022366 cgctcccctcattctttacatcgaatttcgcagttgatgat 13022326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 63 - 602
Target Start/End: Original strand, 33088625 - 33089137
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatca 162  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||| |||||||||||||| |||||||||||||||| | ||    
T  33088625 actagttaaatctagtgagaaaattggataagaaaaacataatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtgagccaaacca 33088724  T
Q  163 actagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatata 262  Q
    |||||||||| |||||||||||||||||||||||||||||  |||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  33088725 actagaaagtgtttatataagggtagagtgacctccaagg--gtgtgcccttggggtacccacttttataaacgggtgaacgcttacaaaaacatatata 33088822  T
Q  263 t--cgcgcgcga-gaccgaaccgaaccgaacagggccggtcgtggatcgtgggtggaaaataaaata-tannnnnnngtcacttgaaaatgataaattaa 358  Q
    |  | ||||||| |||     |  ||||||| ||||||| | ||| | ||||||||||||||| ||| |        |||||||| ||||| ||||||||    
T  33088823 tcacacgcgcgatgacgttgtctgaccgaaccgggccgggcttgggtggtgggtggaaaataatatattttttttttgtcacttggaaatgttaaattaa 33088922  T
Q  359 ttatttaattaatctaatcattatccaaaaacgctacgcgtaacaagtaaggttgttacgatccgacccgatccaaaacgagtatccagaagcttccgga 458  Q
    |||||||||||||||||||||||||  ||| ||||         || | |  ||||||||          |||||||| ||||||||||||| |||||||    
T  33088923 ttatttaattaatctaatcattatcagaaagcgct---------aaatgaaattgttacg----------atccaaaatgagtatccagaagtttccgga 33089003  T
Q  459 tatatccaattaagaaac-aaaacgcatttgcttaaggattaagcagacttaatccctaagaaactcgttttttgttacgaactcctcctataaaaggag 557  Q
    |||||||||||||||||| |||||||           | |||||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||    
T  33089004 tatatccaattaagaaacaaaaacgc-----------gtttaagcagacttaatccccaagtctctcgttttttgttacgaactcctcctataaaaggag 33089092  T
Q  558 agctcgcccccctcattcttcacatcgaatttcgcagttgatgat 602  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||    
T  33089093 agctcgcccccctcattcttcgcatcgaattacgcagttgatgat 33089137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 306 - 602
Target Start/End: Complemental strand, 20810967 - 20810673
Alignment:
Q  306 tcgtgggtggaaaataaaatatannnnnnngtcacttgaaaatgataaattaattatttaattaatctaatcattatccaaaaacgctacgcgtaacaag 405  Q
    ||||||||||||||||| |||||       |||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||     
T  20810967 tcgtgggtggaaaataatatatatttttttgtcacttgaaaatgttaaattaattatttaattaatctaatcattatccgaaagcgctacgcgtaacaaa 20810868  T
Q  406 taaggttgttacgatccgacccgatccaaaacgagtatccagaagcttccggatatatccaattaagaaacaaaacgcatttgcttaaggattaagcaga 505  Q
    |||  ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||  ||| ||| ||||||||||       
T  20810867 taaaattgttacgatccgacccgatccaaaacaagtatccagaagtttccggatatatccaattacgaaacaaaacgtgtttacttgaggattaagc--c 20810770  T
Q  506 cttaatccctaagaaactcgttttttgttacgaactcctcctataaaaggagagctcgcccccctcattcttcacatcgaatttcgcagttgatgat 602  Q
    ||||||||| |||   ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  20810769 cttaatccccaagtctctcgttttttgttacgaactcttcctataaaaggagagctcgcccccctcattcttcacaccaaatttcgcagttgatgat 20810673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 63 - 272
Target Start/End: Complemental strand, 53120305 - 53120098
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatca 162  Q
    |||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||| |||||||||||||| |||||||||||||||||| ||    
T  53120305 actagttaaatctagtgagaaaattggataagaaaaacacgatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtgagccacacca 53120206  T
Q  163 actagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatata 262  Q
    |||||||||| |||||||||||||| |||||||||||||||  ||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  53120205 actagaaagtgtttatataagggtacagtgacctccaaggg--tgtgcccttggggtacccacttttgtgaacaggtgaacgcttacaaaaatatatata 53120108  T
Q  263 tcgcgcgcga 272  Q
    || |||||||    
T  53120107 tcacgcgcga 53120098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 66 - 264
Target Start/End: Original strand, 38436282 - 38436478
Alignment:
Q  66 agttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatcaact 165  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| || |||||||||||||| ||||||||||||||||||||||||    
T  38436282 agttaaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagcgtgtgacttaaaaatgtcccacattggtgagccacatcaact 38436381  T
Q  166 agaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatatatc 264  Q
    | ||||| |||||||||||||||||||||| |||| |  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38436382 aaaaagtgtttatataagggtagagtgaccaccaaag--gtgtgctcttagggtacccacttttgtgaacgggtgaacgcttacaaaaacatatatatc 38436478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 336 - 567
Target Start/End: Complemental strand, 26962626 - 26962394
Alignment:
Q  336 gtcacttgaaaatgataaattaa-ttatttaattaatctaatcattatccaaaaacgctacgcgtaacaagtaaggttgttacgatccgacccgatccaa 434  Q
    |||||||||||||| |||||||| ||||||||| |||||||||||||||| |||||| | |||||||||| |||  ||||||||||||||||||||||||    
T  26962626 gtcacttgaaaatgttaaattaaattatttaatcaatctaatcattatccgaaaacgatgcgcgtaacaaataaaattgttacgatccgacccgatccaa 26962527  T
Q  435 aacgagtatccagaagcttccggatatatccaattaagaaacaaaacgcatttgcttaaggattaagcagacttaatccctaagaaactcgttttttgtt 534  Q
    |||| ||||||| ||  |||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||| ||||  |||||||||||||    
T  26962526 aacgcgtatccaaaactttccggatatatccaattaagaaacaaaacgcgtttacttgaggattaagcagacttaatccccaagactctcgttttttgtt 26962427  T
Q  535 acgaactcctcctataaaaggagagctcgcccc 567  Q
    || ||||| ||||||||||||||||||||||||    
T  26962426 acaaactcttcctataaaaggagagctcgcccc 26962394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 82 - 264
Target Start/End: Complemental strand, 20811177 - 20810997
Alignment:
Q  82 aaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatcaactagaaagtatttatata 181  Q
    |||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| |||||||||| | |||||||||||| ||||| ||||||||    
T  20811177 aaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtaaaccacatcaactaaaaagtgtttatata 20811078  T
Q  182 agggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatatatc 264  Q
    | ||||||||||| ||||| | ||||| | ||||||||||||||| || || |||||||||||||||||||||||||||||||    
T  20811077 aaggtagagtgacttccaa-gatgtgt-cccttggggtacccactcttttgcacgggtgaacgcttacaaaaacatatatatc 20810997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 485 - 602
Target Start/End: Original strand, 38436635 - 38436752
Alignment:
Q  485 tttgcttaaggattaagcagacttaatccctaagaaactcgttttttgttacgaactcctcctataaaaggagagctcgcccccctcattcttcacatcg 584  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  38436635 tttgcttaaggattaagcagacttaatccctaagtatctcgttttttgttacgaactcctcctataaaaggagagctcgcccccctcattcttcacaccg 38436734  T
Q  585 aatttcgcagttgatgat 602  Q
    |||||| |||| ||||||    
T  38436735 aatttcacagtcgatgat 38436752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 93 - 233
Target Start/End: Complemental strand, 26962774 - 26962640
Alignment:
Q  93 agaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatcaactagaaagtatttatataagggtagagtg 192  Q
    ||||||||||||| |||||||||||||| |||    ||||||||| ||  ||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  26962774 agaaaaacacaatgtaaaaactagtgtgtgtg----acttaaaaaagtctcacattggtgagccacaccaactagaaagtgtttatataagggtagagtg 26962679  T
Q  193 acctccaagggtgtgtgctcttggggtacccacttttgtga 233  Q
    |||| |||||  |||||| ||||||||||||||||||||||    
T  26962678 accttcaagg--gtgtgcccttggggtacccacttttgtga 26962640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 455 - 602
Target Start/End: Complemental strand, 53119977 - 53119829
Alignment:
Q  455 cggatatatccaattaagaaacaaaa-cgcatttgcttaaggattaagcagacttaatccctaagaaactcgttttttgttacgaactcctcctataaaa 553  Q
    ||||||||||||||||| |||||||| ||| ||| |||||||||||||||||||||||||| |||   ||||||||| |||||||||||||||| |||||    
T  53119977 cggatatatccaattaaaaaacaaaaacgcgtttacttaaggattaagcagacttaatccccaagtctctcgttttt-gttacgaactcctcctttaaaa 53119879  T
Q  554 ggagagctcgcc-cccctcattcttcacatcgaatttcgcagttgatgat 602  Q
    |||||||||||| |||||||||||| ||| |||||| | |||| ||||||    
T  53119878 ggagagctcgccccccctcattctttacaccgaattccacagtcgatgat 53119829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 65 - 263
Target Start/End: Complemental strand, 26929487 - 26929298
Alignment:
Q  65 tagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatcaac 164  Q
    ||||||| |||||| | ||||||||||| |||||||| ||| ||| ||||||||||      ||||||||||||||| ||||||||||||  ||| ||||    
T  26929487 tagttaattctagtcaaaaaattggata-gaaaaacataatgtaagaactagtgtg------tgacttaaaaatgtttcacattggtgagttacaccaac 26929395  T
Q  165 tagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatatat 263  Q
    ||| |||| ||||||||||||| | |||||||||||  |||||||| ||||||||||||||||||| |||||||| | |||||| ||||| ||| ||||    
T  26929394 tagcaagtgtttatataagggtggggtgacctccaa--gtgtgtgcccttggggtacccacttttgcgaacgggtaagcgcttagaaaaatataaatat 26929298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 456 - 602
Target Start/End: Complemental strand, 6025608 - 6025464
Alignment:
Q  456 ggatatatccaattaagaaaca-aaacgcatttgcttaaggattaagcagacttaatccctaagaaactcgttttttgttacgaactcctcctataaaag 554  Q
    |||||||||||| ||||||||| ||||||    |||||| |||||||| |||||||||| ||||  |||||||||||||||| |||||  ||||||||||    
T  6025608 ggatatatccaactaagaaacagaaacgcg---gcttaatgattaagctgacttaatccttaagtcactcgttttttgttacaaactctccctataaaag 6025512  T
Q  555 gagagctcgcccccctcattcttcacatcgaatttcgcagttgatgat 602  Q
    ||| ||||| ||| ||||||||| ||| |||||||| |||||||||||    
T  6025511 gagggctcgtcccactcattctttacaccgaatttcacagttgatgat 6025464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 11777299 - 11777219
Alignment:
Q  122 gtgtatgacttaaaaatgttccacattggtgagccacatcaactagaaagtatttatataagggtagagtgacctccaagg 202  Q
    |||| |||||||||||||| ||||||||||||||||||  |||||| |||| ||||||||||||||| |||||||||||||    
T  11777299 gtgtgtgacttaaaaatgtcccacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagg 11777219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 526 - 602
Target Start/End: Original strand, 21494027 - 21494103
Alignment:
Q  526 ttttttgttacgaactcctcctataaaaggagagctcgcccccctcattcttcacatcgaatttcgcagttgatgat 602  Q
    |||||||||||||| || ||||||||||||||| |||||||| |||||||||  || |||| ||| |||||||||||    
T  21494027 ttttttgttacgaattcttcctataaaaggagatctcgccccactcattcttaccaccgaaattcacagttgatgat 21494103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 490 - 566
Target Start/End: Complemental strand, 26929015 - 26928939
Alignment:
Q  490 ttaaggattaagcagacttaatccctaagaaactcgttttttgttacgaactcctcctataaaaggagagctcgccc 566  Q
    |||||||||||||  ||||| ||| ||||  ||||||||||||||||||||||  |||||||||| |||||||||||    
T  26929015 ttaaggattaagctaacttagtccttaagtcactcgttttttgttacgaactctgcctataaaagaagagctcgccc 26928939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 122 - 207
Target Start/End: Complemental strand, 6025802 - 6025717
Alignment:
Q  122 gtgtatgacttaaaaatgttccacattggtgagccacatcaactagaaagtatttatataagggtagagtgacctccaagggtgtg 207  Q
    |||| ||| ||||||||||  |||||||||||| ||||  |||||| |||| ||||||||||| | | ||||||||||||| ||||    
T  6025802 gtgtgtgatttaaaaatgtctcacattggtgagtcacactaactagcaagtgtttatataaggatggggtgacctccaaggatgtg 6025717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 450
Target Start/End: Original strand, 38436570 - 38436632
Alignment:
Q  390 cgctacgcgtaacaagtaaggttgttacgatccgacccgatcc--aaaacgagtatccagaag 450  Q
    ||||||||||||||| | || |||||| |||||||||||||||  ||||||||||||| ||||    
T  38436570 cgctacgcgtaacaaatgagattgttatgatccgacccgatccaaaaaacgagtatcccgaag 38436632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 302 - 361
Target Start/End: Original strand, 38436507 - 38436566
Alignment:
Q  302 tggatcgtgggtggaaaataaaatatannnnnnngtcacttgaaaatgataaattaatta 361  Q
    ||| ||||||||||||||||| |||||       ||||||||||||||||||||||||||    
T  38436507 tgggtcgtgggtggaaaataatatatatttttttgtcacttgaaaatgataaattaatta 38436566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 92
Target Start/End: Complemental strand, 3448750 - 3448721
Alignment:
Q  63 actagttaaatctagtgagaaaattggata 92  Q
    ||||||||||||||||||||||||||||||    
T  3448750 actagttaaatctagtgagaaaattggata 3448721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 201
Target Start/End: Original strand, 21493714 - 21493795
Alignment:
Q  121 agtgtatgacttaaaaatgttccacattggtgagccacatcaactagaaagta-tttatataagggtagagtgacctccaag 201  Q
    ||||| ||||||||||||||  |||||| |||||||| |  |||||| || || ||||||||||||| | ||||||||||||    
T  21493714 agtgtttgacttaaaaatgtctcacatttgtgagccaaacaaactagcaactattttatataagggtggggtgacctccaag 21493795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 596
Target Start/End: Original strand, 25023640 - 25023709
Alignment:
Q  527 tttttgttacgaactcctcctataaaaggagagctcgcccccctcattcttcacatcgaatttcgcagtt 596  Q
    ||||||||| || |||  ||||||||||||||||||||||| |||||||   |||||||| ||| |||||    
T  25023640 tttttgttatgagctctccctataaaaggagagctcgccccactcattcagtacatcgaaattcacagtt 25023709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 2616960 - 2616996
Alignment:
Q  205 gtgtgctcttggggtacccacttttgtgaacgggtga 241  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  2616960 gtgtgcccttggggtacccacttttgcgaacgggtga 2616996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 3476371 - 3476403
Alignment:
Q  205 gtgtgctcttggggtacccacttttgtgaacgg 237  Q
    |||||| ||||||||||||||||||||||||||    
T  3476371 gtgtgcccttggggtacccacttttgtgaacgg 3476403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 4117129 - 4117161
Alignment:
Q  205 gtgtgctcttggggtacccacttttgtgaacgg 237  Q
    |||||| ||||||||||||||||||||||||||    
T  4117129 gtgtgcccttggggtacccacttttgtgaacgg 4117161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 54271287 - 54271255
Alignment:
Q  205 gtgtgctcttggggtacccacttttgtgaacgg 237  Q
    |||||| ||||||||||||||||||||||||||    
T  54271287 gtgtgcccttggggtacccacttttgtgaacgg 54271255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 63 - 599
Target Start/End: Complemental strand, 24529174 - 24528659
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatca 162  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||| | | |||||||||||||||| ||    
T  24529174 actagttaaatctagtgagaaaattggataagaaaaacataatataagaactagtgtgagtgtgtgacttaaaaatatcctacattggtgagccacacca 24529075  T
Q  163 actagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatata 262  Q
    |||||||||| ||||||||||||||||||||||||||||||  |||||  ||||||||||||||||| ||||||| ||||||||| ||||||||||||||    
T  24529074 actagaaagtgtttatataagggtagagtgacctccaaggg--tgtgcctttggggtacccacttttatgaacggatgaacgcttgcaaaaacatatata 24528977  T
Q  263 tcgcgcgcgagaccgaaccgaaccgaacagggccggtcgtggatcgtgggtggaaaataaaatatannnnnnngtcacttgaaaatgataaattaattat 362  Q
    || | |||| |||    |||  |||  |  | ||      || ||||||||||||||||| |||||       |||||||||||||||||||||||||||    
T  24528976 tcacacgcgcgacgacgccg--ccgtcc--gacc------gggtcgtgggtggaaaataatatatatttttttgtcacttgaaaatgataaattaattat 24528887  T
Q  363 ttaattaatctaatcattatccaaaaacgctacgcgtaacaagtaaggttgttacgatccgacccgatccaaaacgagtatccagaagcttccggatata 462  Q
    |||||||||||||||||||||| ||| ||||||||||||||| | || ||||||          |||||||||||||||||||||||| |||||||||||    
T  24528886 ttaattaatctaatcattatccgaaagcgctacgcgtaacaaatgagattgtta----------cgatccaaaacgagtatccagaagtttccggatata 24528797  T
Q  463 tccaattaagaaac-aaaacgcatttgcttaaggattaagcagacttaatccctaagaaactcgttttttgttacgaactcctcctataaaaggagagct 561  Q
    |||||||||||||| |||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24528796 tccaattaagaaacaaaaatgcgtttgcttaaggattaagcagacttaatccctaagtaactcgttttttgttacgaactcctcctataaaaggagagct 24528697  T
Q  562 cgcccccctcattcttcacatcgaatttcgcagttgat 599  Q
    ||| |||||| || || |||||||||||  ||||||||    
T  24528696 cgctcccctctttttttacatcgaattttacagttgat 24528659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 63 - 382
Target Start/End: Original strand, 28291851 - 28292171
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatca 162  Q
    |||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||| ||| |||||||||| ||| ||    
T  28291851 actagttaaatctaattagaaaattggataagaaaaacacaatataagaactagtgtgagcgtgtgacttaaaaatgtcccatattggtgagctacacca 28291950  T
Q  163 actagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatata 262  Q
    |||||||||| |||||||||||||| ||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28291951 actagaaagtgtttatataagggtatagtgacctccaagg--gtgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatata 28292048  T
Q  263 tcgcgcgcgagaccgaaccg---aaccgaacagggccggtcgtggatcgtgggtggaaaataaaatatannnnnnngtcacttgaaaatgataaattaat 359  Q
    || | |||| |||    |||    ||||||| ||||||| | ||||||||||||||||||||| |||||       ||||||||||||||||||||||||    
T  28292049 tcacacgcgcgacgccgccgtccgaccgaaccgggccgggcttggatcgtgggtggaaaataatatatatttttttgtcacttgaaaatgataaattaat 28292148  T
Q  360 tatttaattaatctaatcattat 382  Q
    |||||||||||||||||||||||    
T  28292149 tatttaattaatctaatcattat 28292171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 336 - 602
Target Start/End: Complemental strand, 33226905 - 33226648
Alignment:
Q  336 gtcacttgaaaatgataaattaattatttaattaatctaatcattatccaaaaacgctacgcgtaacaagtaaggttgttacgatccgacccgatccaaa 435  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||| | |  |||||||||||           |||    
T  33226905 gtcacttgaaaatgttaaattaattatttaattaatctaatcattatccgaaagcgctacgcgtaacaaatgaaattgttacgatct----------aaa 33226816  T
Q  436 acgagtatccagaagcttccggatatatccaattaagaaacaaaa-cgcatttgcttaaggattaagcagacttaatccctaagaaactcgttttttgtt 534  Q
    ||||||||||||||| |||| |||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||| |||   |||||||||||||    
T  33226815 acgagtatccagaagtttccagatatatccaattaagaaacaaaaacgcgtttacttaaggattaagcagacttaatccccaagtctctcgttttttgtt 33226716  T
Q  535 acgaactcctcctataaaaggagagctcgcccccctcattcttcacatcgaatttcgcagttgatgat 602  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||| | |||| ||||||    
T  33226715 acgaactcctcctataaaaggagagctcgcccccctcattctttacaccgaattccacagtcgatgat 33226648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 63 - 263
Target Start/End: Complemental strand, 7358118 - 7357920
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatca 162  Q
    ||||||| |||||  ||||||||||||||||||||||||||||  || |||||||||||| || |||||||||||||| ||| |||||||||||||| ||    
T  7358118 actagttgaatcttttgagaaaattggataagaaaaacacaatgcaagaactagtgtgagcgtgtgacttaaaaatgtcccatattggtgagccacacca 7358019  T
Q  163 actagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatata 262  Q
    | |||||||| |||||||||||||||||||||||||||||   ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7358018 attagaaagtgtttatataagggtagagtgacctccaagg--atgtgcccttgaggtacccacttttgtgaacgggtgaacgcttacaaaaacatatata 7357921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 63 - 259
Target Start/End: Complemental strand, 33227104 - 33226916
Alignment:
Q  63 actagttaaatctagtgagaaaattggataag-aaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatc 161  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| |||| |    
T  33227104 actagttaaatctagtgagaaaattggataaggaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacattggtgagtcacacc 33227005  T
Q  162 aactagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatat 259  Q
    ||||||||||| |||||||||||||||||||||||||||  | |||||| |||       ||||||||||||||||||||||||||||||||||||||    
T  33227004 aactagaaagtgtttatataagggtagagtgacctccaa--gagtgtgccctt-------ccacttttgtgaacgggtgaacgcttacaaaaacatat 33226916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 63 - 201
Target Start/End: Complemental strand, 9974053 - 9973915
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatca 162  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||| |||||||||||||| |||||||||||||||||| ||    
T  9974053 actagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactaatgtgagtgtgtgacttaaaaatgtcccacattggtgagccacacca 9973954  T
Q  163 actagaaagtatttatataagggtagagtgacctccaag 201  Q
    |||||||| | || |||||||||||||||||||||||||    
T  9973953 actagaaattgttaatataagggtagagtgacctccaag 9973915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 456 - 602
Target Start/End: Complemental strand, 9973909 - 9973763
Alignment:
Q  456 ggatatatccaattaagaaacaaaacgcatttgcttaaggattaagcagacttaatccctaagaaactcgttttttgttacgaactcctcctataaaagg 555  Q
    |||||||||||||||||||||||||||| ||| ||| |||||||||| ||||||||||| |||   ||||||||||||||| ||||| ||||||||||||    
T  9973909 ggatatatccaattaagaaacaaaacgcgtttacttgaggattaagccgacttaatccccaagtctctcgttttttgttacaaactcttcctataaaagg 9973810  T
Q  556 agagctcgcccccctcattcttcacatcgaatttcgcagttgatgat 602  Q
    ||||||||| |||||||||||| ||| ||||||||||||||||||||    
T  9973809 agagctcgctcccctcattcttaacaccgaatttcgcagttgatgat 9973763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 419 - 496
Target Start/End: Original strand, 28292173 - 28292251
Alignment:
Q  419 atccgacccgatccaaaacgagtatccagaagcttccggatatatccaattaagaaac-aaaacgcatttgcttaagga 496  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| || ||||||||||||    
T  28292173 atccgacccgatccaaaacgagtatccagaagtttccggatatatccaattaagaaacaaaaatgcgtttgcttaagga 28292251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 504 - 602
Target Start/End: Complemental strand, 47762025 - 47761927
Alignment:
Q  504 gacttaatccctaagaaactcgttttttgttacgaactcctcctataaaaggagagctcgcccccctcattcttcacatcgaatttcgcagttgatgat 602  Q
    |||||||||| ||||  ||||||||||||||||||||||  ||||||||| ||||||||||||| ||||||||| ||| |||| ||| || ||||||||    
T  47762025 gacttaatccttaagttactcgttttttgttacgaactctgcctataaaatgagagctcgccccactcattctttacaccgaaattcacaattgatgat 47761927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 63 - 207
Target Start/End: Complemental strand, 47762488 - 47762353
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatca 162  Q
    ||||| ||| |||||||| ||||||| ||| |||||||||||| ||| ||||||||||      |||||||||||||||||||||| |||||||||| ||    
T  47762488 actagctaagtctagtga-aaaattgaata-gaaaaacacaatgtaagaactagtgtg------tgacttaaaaatgttccacattagtgagccacacca 47762397  T
Q  163 actagaaagtatttatataagggtagagtgacctccaagggtgtg 207  Q
    ||||| || | ||||||||| ||| | ||||||||||||| ||||    
T  47762396 actagtaaatgtttatataaaggt-gggtgacctccaaggatgtg 47762353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 10437447 - 10437405
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaat 105  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  10437447 actagttgaatctagtgagaaaattggataagaaaaacacaat 10437405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 10451157 - 10451115
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaat 105  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  10451157 actagttgaatctagtgagaaaattggataagaaaaacacaat 10451115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 552 - 602
Target Start/End: Original strand, 28292247 - 28292297
Alignment:
Q  552 aaggagagctcgcccccctcattcttcacatcgaatttcgcagttgatgat 602  Q
    |||||||||||||||||||||||||||||| |||||| | |||| ||||||    
T  28292247 aaggagagctcgcccccctcattcttcacaccgaattccacagtcgatgat 28292297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 32212137 - 32212176
Alignment:
Q  196 tccaagggtgtgtgctcttggggtacccacttttgtgaacgg 237  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  32212137 tccaagggtgtgtgct--tggggtacccacttttgtgaacgg 32212176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 12935052 - 12935020
Alignment:
Q  205 gtgtgctcttggggtacccacttttgtgaacgg 237  Q
    |||||| ||||||||||||||||||||||||||    
T  12935052 gtgtgcccttggggtacccacttttgtgaacgg 12935020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 16538852 - 16538884
Alignment:
Q  205 gtgtgctcttggggtacccacttttgtgaacgg 237  Q
    |||||| ||||||||||||||||||||||||||    
T  16538852 gtgtgcccttggggtacccacttttgtgaacgg 16538884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 16626810 - 16626778
Alignment:
Q  205 gtgtgctcttggggtacccacttttgtgaacgg 237  Q
    |||||| ||||||||||||||||||||||||||    
T  16626810 gtgtgcccttggggtacccacttttgtgaacgg 16626778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 17496068 - 17496036
Alignment:
Q  205 gtgtgctcttggggtacccacttttgtgaacgg 237  Q
    |||||| ||||||||||||||||||||||||||    
T  17496068 gtgtgcccttggggtacccacttttgtgaacgg 17496036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 17557146 - 17557178
Alignment:
Q  205 gtgtgctcttggggtacccacttttgtgaacgg 237  Q
    |||||| ||||||||||||||||||||||||||    
T  17557146 gtgtgcccttggggtacccacttttgtgaacgg 17557178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 43893510 - 43893478
Alignment:
Q  205 gtgtgctcttggggtacccacttttgtgaacgg 237  Q
    |||||| ||||||||||||||||||||||||||    
T  43893510 gtgtgcccttggggtacccacttttgtgaacgg 43893478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 336 - 602
Target Start/End: Original strand, 26650693 - 26650960
Alignment:
Q  336 gtcacttgaaaatgataaattaattatttaattaatctaatcattatccaaaaacgctacgcgtaacaagtaaggttgttacgatccgacccgatccaaa 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||| | || |||||||||||||||||||||||||    
T  26650693 gtcacttgaaaatgataaattaattatttaattaatctaatcattatccgaaagcgctacgcataacaaatgagattgttacgatccgacccgatccaaa 26650792  T
Q  436 acgagtatccagaagcttccggatatatccaattaagaaac-aaaacgcatttgcttaaggattaagcagacttaatccctaagaaactcgttttttgtt 534  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||| | |||||||||||||    
T  26650793 acgagtatccagaagtttccggatatatccaattaagaaacaaaaacgcgtttgcttaaggattaagcagacttaatctctaagtatctcgttttttgtt 26650892  T
Q  535 acgaactcctcctataaaaggagagctcgcccccctcattcttcacatcgaatttcgcagttgatgat 602  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||| | |||| ||||||    
T  26650893 acgaactcctcctacaaaaggagagctcgcccccctcattcttcacaccgaattccacagtcgatgat 26650960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 63 - 380
Target Start/End: Complemental strand, 38734910 - 38734602
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatca 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||| |||||||||||||| ||    
T  38734910 actagttaaatctagtgagaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccatattggtgagccacacca 38734811  T
Q  163 actagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatata 262  Q
    |||||||||| ||||||||||||||||||||||| ||| |  |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  38734810 actagaaagtgtttatataagggtagagtgaccttcaaag--gtgtgcccttaggatacccacttttgtgaacgggtgaacgcttacaaaaacatatata 38734713  T
Q  263 tcgcgcg-cga-gaccgaaccgaaccgaacagggccggtcgtggatcgtgggtggaaaataaaatata-nnnnnnngtcacttgaaaatgataaattaat 359  Q
    |||| || ||| |||||  ||          ||||||| | ||| ||||||||| |||||||||||||        ||||||||||||||||||||||||    
T  38734712 tcgcacgacgatgaccgggcc----------gggccgggcttgggtcgtgggtgaaaaataaaatatatattttttgtcacttgaaaatgataaattaat 38734623  T
Q  360 tatttaattaatctaatcatt 380  Q
    |||||||||||||||||||||    
T  38734622 tatttaattaatctaatcatt 38734602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 63 - 264
Target Start/End: Original strand, 26650437 - 26650635
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatca 162  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  26650437 actagttaaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtgagccacatca 26650536  T
Q  163 actagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatata 262  Q
    ||||||||||  ||||||||||||||||||||||||||||   ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26650537 actagaaagt-gttatataagggtagagtgacctccaagg--atgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaaaaatatatata 26650633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 63 - 264
Target Start/End: Complemental strand, 13891589 - 13891390
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatca 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||| |||||||||||||||||| ||    
T  13891589 actagttaaatctagtgagaaaattggataagaaaaacacaatataagaactagtgtaagtgtgtgacttaaaaatgtcccacattggtgagccacacca 13891490  T
Q  163 actagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatata 262  Q
    |||||||||| |||||||||||| ||||||||||||||||   ||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  13891489 actagaaagtgtttatataagggaagagtgacctccaagg--atgtgcccttgaggtacccacttttgtgaacgggtgaatgcttacaaaaacatatata 13891392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 63 - 263
Target Start/End: Original strand, 39746683 - 39746880
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatca 162  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| || |||||||||||||| ||    
T  39746683 actagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtttcatattggtgagccacacca 39746782  T
Q  163 actagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatata 262  Q
    |||||||||| |||||||||||||||||| ||||||||||   ||||| |||  |||||||||||||||||||| ||||||||||||||||| |||||||    
T  39746783 actagaaagtgtttatataagggtagagtaacctccaagg--atgtgcccttaaggtacccacttttgtgaacgagtgaacgcttacaaaaa-atatata 39746879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 63 - 237
Target Start/End: Complemental strand, 31289538 - 31289367
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatca 162  Q
    ||||||| |||||||||||||||||||||||||||| |||||| ||| ||||||||||||||| |||||||||||||| |||||||||||||||||| ||    
T  31289538 actagttgaatctagtgagaaaattggataagaaaa-cacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtgagccacacca 31289440  T
Q  163 actagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgg 237  Q
    |||||||||| ||||||||||||||||||||||||||||||  ||||| ||| |||||||||||||||| |||||    
T  31289439 actagaaagtgtttatataagggtagagtgacctccaaggg--tgtgcccttagggtacccacttttgtaaacgg 31289367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 457 - 602
Target Start/End: Complemental strand, 13891258 - 13891112
Alignment:
Q  457 gatatatccaattaagaaacaaaa-cgcatttgcttaaggattaagcagacttaatccctaagaaactcgttttttgttacgaactcctcctataaaagg 555  Q
    |||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13891258 gatatatctaattaagaaacaaaaacgcgtttgcttaaggattaagcagacttaatccctaagtaactcgttttttgttacgaactcctcctataaaagg 13891159  T
Q  556 agagctcgcccccctcattcttcacatcgaatttcgcagttgatgat 602  Q
    ||||||||| ||||||||||||||||| ||||| |||||||||||||    
T  13891158 agagctcgctcccctcattcttcacattgaattacgcagttgatgat 13891112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 63 - 198
Target Start/End: Complemental strand, 14582532 - 14582397
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatca 162  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| |||||||||||| ||||| ||    
T  14582532 actagttaaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtgaaccacacca 14582433  T
Q  163 actagaaagtatttatataagggtagagtgacctcc 198  Q
    |||||||| | |||||||||||||||||||||||||    
T  14582432 actagaaattttttatataagggtagagtgacctcc 14582397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 63 - 271
Target Start/End: Complemental strand, 10106826 - 10106619
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaac-acaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatc 161  Q
    ||||||| ||||||||||||||||||  | |||| ||  || | |||  ||||||||||  ||| |||||||||||||| |||||||||| || |||  |    
T  10106826 actagttcaatctagtgagaaaattgattgagaataattactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggttagtcacccc 10106727  T
Q  162 aactagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatat 261  Q
    |||||| |||| |||||||||||| |||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10106726 aactagtaagtgtttatataaggggagagtgacctccaagggtgtg--cccttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatat 10106629  T
Q  262 atcgcgcgcg 271  Q
    ||| ||||||    
T  10106628 atcacgcgcg 10106619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 161 - 264
Target Start/End: Original strand, 19406288 - 19406389
Alignment:
Q  161 caactagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatata 260  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||  |  |||||||||||||||| |||||||| ||||||||||||||||||||||    
T  19406288 caactagaaagtgtttatataagggtagagtgacccccaagggtgtg--cctttggggtacccactttcgtgaacggatgaacgcttacaaaaacatata 19406385  T
Q  261 tatc 264  Q
    ||||    
T  19406386 tatc 19406389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 526 - 600
Target Start/End: Original strand, 39747002 - 39747076
Alignment:
Q  526 ttttttgttacgaactcctcctataaaaggagagctcgcccccctcattcttcacatcgaatttcgcagttgatg 600  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  39747002 ttttttgttacgaactcttcctataaaaggagagctcgcccccctcattcttcacactgaatttcgcagttgatg 39747076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 63 - 148
Target Start/End: Original strand, 5602179 - 5602264
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacatt 148  Q
    ||||||| ||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| |||||||    
T  5602179 actagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 5602264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 64 - 271
Target Start/End: Complemental strand, 12179484 - 12179279
Alignment:
Q  64 ctagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagcc----aca 159  Q
    |||||||| |||||| | ||||||||||| |||||||||||| ||| |||||||||| |||    |||||||||| | | |||||||||||||    |||    
T  12179484 ctagttaattctagtaaaaaaattggata-gaaaaacacaatgtaagaactagtgtgtgtg----acttaaaaatatcctacattggtgagccacgtaca 12179390  T
Q  160 tcaactagaaagtatttatataagggtagag-tgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacata 258  Q
     ||||||| |||| ||||||||||||| | | |||||| |||  |||||||| |||||| |||||||| ||||||||| |||| | |||| ||||| |||    
T  12179389 ccaactagcaagtgtttatataagggtggggatgacctgcaa--gtgtgtgcccttgggatacccactgttgtgaacgagtgagcacttagaaaaatata 12179292  T
Q  259 tatatcgcgcgcg 271  Q
    |||||| ||||||    
T  12179291 tatatcacgcgcg 12179279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 506 - 598
Target Start/End: Complemental strand, 10106496 - 10106405
Alignment:
Q  506 cttaatccctaagaaactcgttttttgttacgaactcctcctataaaaggagagctcgcccccctcattcttcacatcgaatttcgcagttga 598  Q
    ||||||||| ||| | ||||||||| ||||||||||||||||||||||||||||||||| |||||||||   ||||||||||| | |||||||    
T  10106496 cttaatccccaagtatctcgttttt-gttacgaactcctcctataaaaggagagctcgctcccctcatttaacacatcgaattacacagttga 10106405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 350 - 399
Target Start/End: Original strand, 19406465 - 19406514
Alignment:
Q  350 ataaattaattatttaattaatctaatcattatccaaaaacgctacgcgt 399  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19406465 ataaattaattatttaattaatctaatcattatccaaaagcgctacgcgt 19406514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 455 - 548
Target Start/End: Original strand, 19406518 - 19406611
Alignment:
Q  455 cggatatatccaattaagaaacaaaacgcatttgcttaaggattaagcagacttaatccctaagaaactcgttttttgttacgaactcctccta 548  Q
    ||||||||||||||||||||||||| |  |||| ||| |||||| ||| ||||||||||| |||   ||||||||||||||| ||||| |||||    
T  19406518 cggatatatccaattaagaaacaaatcttatttacttgaggattcagccgacttaatccccaagtctctcgttttttgttacaaactcttccta 19406611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 422 - 467
Target Start/End: Original strand, 39746947 - 39746992
Alignment:
Q  422 cgacccgatccaaaacgagtatccagaagcttccggatatatccaa 467  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  39746947 cgacccgatccaaaacgagtatccagaagtttccggatatatccaa 39746992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 430
Target Start/End: Complemental strand, 13891292 - 13891256
Alignment:
Q  394 acgcgtaacaagtaaggttgttacgatccgacccgat 430  Q
    |||||||||||||||||||||||||||||||||||||    
T  13891292 acgcgtaacaagtaaggttgttacgatccgacccgat 13891256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 538 - 602
Target Start/End: Original strand, 19422599 - 19422663
Alignment:
Q  538 aactcctcctataaaaggagagctcgcccccctcattcttcacatcgaatttcgcagttgatgat 602  Q
    ||||| |||||||||| ||||||||||||||||| ||||| ||| |||||||| |||| ||||||    
T  19422599 aactcttcctataaaatgagagctcgcccccctcgttcttgacaccgaatttcacagtcgatgat 19422663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 14724943 - 14724903
Alignment:
Q  213 ttggggtacccacttttgtgaacgggtgaacgcttacaaaa 253  Q
    |||||||||||||||||| |||||||||| |||||| ||||    
T  14724943 ttggggtacccacttttgggaacgggtgagcgcttagaaaa 14724903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 48246151 - 48246183
Alignment:
Q  205 gtgtgctcttggggtacccacttttgtgaacgg 237  Q
    |||||| ||||||||||||||||||||||||||    
T  48246151 gtgtgcccttggggtacccacttttgtgaacgg 48246183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 174; Significance: 3e-93; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 63 - 474
Target Start/End: Complemental strand, 19478922 - 19478512
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatca 162  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| |||||||||||||||||| ||    
T  19478922 actagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtgagccacacca 19478823  T
Q  163 actagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatata 262  Q
    |||||||||| |||||||||||||||||| |||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19478822 actagaaagtgtttatataagggtagagtaacctccaaggg--tgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaaaaatatatata 19478725  T
Q  263 tcgcgcgcgagac--cga-accg---aaccga---acagggccggtcgtggatcgtgggtggaaaata--aaatatannnnnnngtcacttgaaaatgat 351  Q
    || | |||| |||  |||  |||   | ||||   || || |||| | ||| ||||||||||||||||  | |||||       |||||||||||||| |    
T  19478724 tcacacgcgcgacgacgacgccgtccatccgaccgaccggaccgggcttgggtcgtgggtggaaaataatatatatatttttttgtcacttgaaaatgtt 19478625  T
Q  352 aaattaattatttaattaatctaatcattatccaaaaacgctacgcgtaacaagtaaggttgttacgatccgacccgatccaaaacgagtatccagaagc 451  Q
    ||||||||||||||||||||||||||||||||| |||  |||||||||||||| |||  || |||          ||||||||||||||||||||||||     
T  19478624 aaattaattatttaattaatctaatcattatccgaaagtgctacgcgtaacaaataaaattttta----------cgatccaaaacgagtatccagaagt 19478535  T
Q  452 ttccggatatatccaattaagaa 474  Q
    || ||||||||||||||||||||    
T  19478534 tttcggatatatccaattaagaa 19478512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 63 - 264
Target Start/End: Original strand, 17289616 - 17289812
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatca 162  Q
    ||||||| |||||||||||||||||||||| |||||||||||| ||| |||||||||| ||||  ||||||||||||| |||||||||||||||||| ||    
T  17289616 actagttgaatctagtgagaaaattggata-gaaaaacacaatgtaagaactagtgtgtgtgt--gacttaaaaatgtcccacattggtgagccacacca 17289712  T
Q  163 actagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatata 262  Q
    || || |||| ||||||||||||||||||||| |||||||   ||||| |||||  |||||||||||| |||| ||||| ||||||||||||||||||||    
T  17289713 acaagcaagtgtttatataagggtagagtgacatccaagg--atgtgcccttggactacccacttttgcgaacaggtgagcgcttacaaaaacatatata 17289810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 337 - 577
Target Start/End: Original strand, 17289889 - 17290132
Alignment:
Q  337 tcacttgaaaatgataaattaattatttaattaatctaatcattat--ccaaaaacgctacgcgtaacaagtaaggttgttacgatccgacccgatccaa 434  Q
    ||||||||||||| ||||||||||| ||||||||| || |||||||  |  ||| | ||||||||||||| |||  ||||||||||||||||||||| ||    
T  17289889 tcacttgaaaatgttaaattaattaattaattaatttagtcattatatctgaaagcactacgcgtaacaaataaa-ttgttacgatccgacccgatctaa 17289987  T
Q  435 aacgagtatccagaagcttccggatatatccaattaagaaacaaaacgcatttgcttaaggattaagcagacttaatccctaagaaactcg--ttttttg 532  Q
    |||| || | || |||||||||||||||||||||||||||||||||||| ||| ||| || ||||||| ||||||||||| |||  |||||  |||||||    
T  17289988 aacgcgttttcaaaagcttccggatatatccaattaagaaacaaaacgcgtttacttcagaattaagccgacttaatccccaagtcactcgttttttttg 17290087  T
Q  533 ttacgaactcctcctataaaaggagagctcgcccccctcattctt 577  Q
    ||||||||||  ||| |||||||||| |||||||| |||||||||    
T  17290088 ttacgaactctccctgtaaaaggagatctcgccccactcattctt 17290132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 62 - 263
Target Start/End: Complemental strand, 10485882 - 10485685
Alignment:
Q  62 tactagttaaatctagtgagaaaa-ttggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacat 160  Q
    |||||||||||||||||||||||| ||||||| |||||||||||| ||| |||||||||| |||   ||||||||||||||||||||||||||||||||     
T  10485882 tactagttaaatctagtgagaaaaattggata-gaaaaacacaatgtaagaactagtgtgtgtga--gacttaaaaatgttccacattggtgagccacac 10485786  T
Q  161 caactagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatata 260  Q
    ||||||| |||| ||||||||||||||||||||| ||||||||  ||||| |||| |||||| ||||||| |||  ||||| |||||| |||||||||||    
T  10485785 caactagcaagtgtttatataagggtagagtgacatccaaggg--tgtgcccttgaggtacctacttttgcgaataggtgagcgcttagaaaaacatata 10485688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 65 - 271
Target Start/End: Original strand, 17280873 - 17281072
Alignment:
Q  65 tagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatcaac 164  Q
    ||||| |||||||||||||||||||||| |||||| | ||| ||| |||||||||| |||    ||||||||||||| ||||||||||||||| ||||||    
T  17280873 tagttgaatctagtgagaaaattggata-gaaaaatagaatgtaagaactagtgtgtgtg----acttaaaaatgtttcacattggtgagccatatcaac 17280967  T
Q  165 tagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatatatc 264  Q
    ||| |||| |||||||||||||||||||||||||||||  |||||| ||| | |||||||||||||  ||||||||| |||||||||||||| |||||||    
T  17280968 tagcaagtgtttatataagggtagagtgacctccaagg--gtgtgcccttcgcgtacccacttttgcaaacgggtgagcgcttacaaaaacaaatatatc 17281065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 438 - 602
Target Start/End: Original strand, 11956332 - 11956497
Alignment:
Q  438 gagtatccagaagcttccggatatatccaattaagaaaca-aaacgcatttgcttaaggattaagcagacttaatccctaagaaactcgttttttgttac 536  Q
    ||||||||||||  |||||||||||||||| ||||||||| ||| ||  ||||||||||||||||| |||||||||| ||||  ||||||||||||||||    
T  11956332 gagtatccagaattttccggatatatccaactaagaaacataaatgcggttgcttaaggattaagctgacttaatccttaagtcactcgttttttgttac 11956431  T
Q  537 gaactcctcctataaaaggagagctcgcccccctcattcttcacatcgaatttcgcagttgatgat 602  Q
    ||||||  |||||||||||||||||| |||| ||||||||| ||| |||| ||| |||||||||||    
T  11956432 gaactctacctataaaaggagagctctccccactcattctttacaccgaaattcacagttgatgat 11956497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 440 - 600
Target Start/End: Original strand, 17281193 - 17281357
Alignment:
Q  440 gtatccagaagcttccggatatatccaattaagaaacaaaacgcatttgcttaaggattaagcagacttaatccctaagaaactcg----ttttttgtta 535  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||| ||| |||||||||| ||||||||||| |||  |||||    ||||||||||    
T  17281193 gtatccagaagcttccggatatatccgattaagaaacaaaacgcgtttacttcaggattaagccgacttaatccccaagtcactcgttttttttttgtta 17281292  T
Q  536 cgaactcctcctataaaaggagagctcgcccccctcattcttcacatcgaatttcgcagttgatg 600  Q
    | |||||  |||||||||||||||||| |||| ||||||||| ||| |||| |||  ||||||||    
T  17281293 caaactctccctataaaaggagagctcaccccactcattcttaacaccgaaattcatagttgatg 17281357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 390 - 481
Target Start/End: Complemental strand, 10485563 - 10485472
Alignment:
Q  390 cgctacgcgtaacaagtaaggttgttacgatccgacccgatccaaaacgagtatccagaagcttccggatatatccaattaagaaacaaaac 481  Q
    ||||||||||||||| |||  |||||||||||||||||||||||||||| |||| |||||| |||||||||||| | |||||||||||||||    
T  10485563 cgctacgcgtaacaaataaaattgttacgatccgacccgatccaaaacgcgtattcagaagtttccggatatattctattaagaaacaaaac 10485472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 537 - 602
Target Start/End: Complemental strand, 19478514 - 19478449
Alignment:
Q  537 gaactcctcctataaaaggagagctcgcccccctcattcttcacatcgaatttcgcagttgatgat 602  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19478514 gaactcttcctataaaaggagagctcgcccccctcattcttcacaccgaatttcgcagttgatgat 19478449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 14450626 - 14450702
Alignment:
Q  84 aattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacat 160  Q
    |||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| |||||||| ||||||||||    
T  14450626 aattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattgatgagccacat 14450702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 122 - 207
Target Start/End: Original strand, 11956127 - 11956212
Alignment:
Q  122 gtgtatgacttaaaaatgttccacattggtgagccacatcaactagaaagtatttatataagggtagagtgacctccaagggtgtg 207  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||| ||||||||||||| | ||||||| ||||| ||||    
T  11956127 gtgtatgacttaaaaatgttccacataggtgagccacactaactagaaagtgtttatataagggtggggtgacctacaaggatgtg 11956212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 485 - 602
Target Start/End: Complemental strand, 3902691 - 3902575
Alignment:
Q  485 tttgcttaaggattaagcagacttaatccctaagaaactcgttttttgttacgaactcctcctataaaaggagagctcgcccccctcattcttcacatcg 584  Q
    |||||||||||||||||| |||||||||| | ||  ||||||||||||||||||||||  ||||||||||||||| || || | ||||||||| |||  |    
T  3902691 tttgcttaaggattaagctgacttaatccttgagtcactcgttttttgttacgaactctgcctataaaaggagagttc-ccgcactcattctttacactg 3902593  T
Q  585 aatttcgcagttgatgat 602  Q
    || ||| |||||||||||    
T  3902592 aaattcacagttgatgat 3902575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 62 - 207
Target Start/End: Complemental strand, 3903001 - 3902862
Alignment:
Q  62 tactagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatc 161  Q
    |||||||||| |||||||| ||||||||||| ||||||||| || | | |||||||||| | |    |||||||||||| | ||||||||||  |||| |    
T  3903001 tactagttaattctagtga-aaaattggata-gaaaaacactatgtgagaactagtgtgtgag----acttaaaaatgtcctacattggtgaatcacacc 3902908  T
Q  162 aactagaaagtatttatataagggtagagtgacctccaagggtgtg 207  Q
    |||||| |||| ||||||||||||| | ||||||||||||||||||    
T  3902907 aactagcaagtgtttatataagggtggggtgacctccaagggtgtg 3902862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 63 - 204
Target Start/End: Complemental strand, 29326374 - 29326239
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatca 162  Q
    ||||||||| |||||||| ||| ||||||| ||||||||| || ||| || ||||||| |||    ||||||||||||  |||||||||||| |||| ||    
T  29326374 actagttaattctagtga-aaagttggata-gaaaaacactatgtaagaattagtgtgcgtg----acttaaaaatgtctcacattggtgaggcacacca 29326281  T
Q  163 actagaaagtatttatataagggtagagtgacctccaagggt 204  Q
    ||||| |||| ||||||||||||| | |||||||||||||||    
T  29326280 actagcaagtgtttatataagggtggggtgacctccaagggt 29326239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 143 - 270
Target Start/End: Original strand, 28696922 - 28697050
Alignment:
Q  143 cacattggtgagccacatcaactagaaagtatttat---ataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggt 239  Q
    ||||||||||||| ||| ||||||| |||| |||||   |||||||| | |||||||| |||||||||  | |||||||||||||||||||| |||| ||    
T  28696922 cacattggtgagcaacaccaactagcaagtgtttattatataagggtggggtgacctctaagggtgtg--cacttggggtacccacttttgtaaacgagt 28697019  T
Q  240 gaacgcttacaaaaacatatatatcgcgcgc 270  Q
    || |||||| ||||| | ||||||| |||||    
T  28697020 gagcgcttagaaaaataaatatatcacgcgc 28697050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 485 - 602
Target Start/End: Complemental strand, 3902334 - 3902217
Alignment:
Q  485 tttgcttaaggattaag-cagacttaatccctaagaaactcgttttttgttacgaactcctcctataaaaggagagctcgcccccctcattcttcacatc 583  Q
    ||||||||||||||||| |||||||||||| | ||  |||| |||||||||||||||||  ||||||||||||||| || |||| ||||||||| |||      
T  3902334 tttgcttaaggattaagtcagacttaatccttgagtcactcattttttgttacgaactctgcctataaaaggagagttc-ccccactcattctttacact 3902236  T
Q  584 gaatttcgcagttgatgat 602  Q
    ||| ||| || ||||||||    
T  3902235 gaaattcacaattgatgat 3902217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 526 - 602
Target Start/End: Complemental strand, 29325915 - 29325840
Alignment:
Q  526 ttttttgttacgaactcctcctataaaaggagagctcgcccccctcattcttcacatcgaatttcgcagttgatgat 602  Q
    |||||||||||||||||  |||||||||||||||||| |||| ||||||||| ||| |||| |||  ||||||||||    
T  29325915 ttttttgttacgaactcagcctataaaaggagagctc-ccccactcattctttacaccgaaattcatagttgatgat 29325840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 384
Target Start/End: Complemental strand, 29325977 - 29325929
Alignment:
Q  336 gtcacttgaaaatgataaattaattatttaattaatctaatcattatcc 384  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||||    
T  29325977 gtcacttgaaaatgataaattaattaattaatcaatttaatcattatcc 29325929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 526 - 602
Target Start/End: Complemental strand, 29326090 - 29326015
Alignment:
Q  526 ttttttgttacgaactcctcctataaaaggagagctcgcccccctcattcttcacatcgaatttcgcagttgatgat 602  Q
    |||||||||||||||||  |||||||||||||||||| |||| ||||||||| ||| |||| |||  ||||||||||    
T  29326090 ttttttgttacgaactctgcctataaaaggagagctc-ccccactcattctttacagcgaaattcatagttgatgat 29326015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 146 - 264
Target Start/End: Complemental strand, 13660497 - 13660382
Alignment:
Q  146 attggtgagccacatcaactagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgc 245  Q
    ||||||||||||||  |||||| |||| ||||||||||||| |  |||||||||| |  |||||| |||||| || || |||||| ||||||| || | |    
T  13660497 attggtgagccacactaactagcaagtgtttatataagggtgggatgacctccaaag--gtgtgcccttgggatatcc-cttttgagaacgggagagcac 13660401  T
Q  246 ttacaaaaacatatatatc 264  Q
    ||| |||||||||||||||    
T  13660400 ttagaaaaacatatatatc 13660382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 549 - 600
Target Start/End: Complemental strand, 10485425 - 10485374
Alignment:
Q  549 taaaaggagagctcgcccccctcattcttcacatcgaatttcgcagttgatg 600  Q
    ||||||||||||||||||| ||||||||||||| |||| ||| | |||||||    
T  10485425 taaaaggagagctcgccccactcattcttcacaccgaaattcacggttgatg 10485374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 6727955 - 6727988
Alignment:
Q  204 tgtgtgctcttggggtacccacttttgtgaacgg 237  Q
    ||||||| ||||||||||||||||||||||||||    
T  6727955 tgtgtgcccttggggtacccacttttgtgaacgg 6727988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 262
Target Start/End: Complemental strand, 22714009 - 22713923
Alignment:
Q  174 tttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatata 262  Q
    |||||||||| | ||||||||||| ||||||||||   ||||||||||||| ||||   ||||||||| ||||||| || | |||||||    
T  22714009 tttatataagtggagagtgacctctaagggtgtgt--ccttggggtacccagttttacaaacgggtgagcgcttacgaatatatatata 22713923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 34142749 - 34142717
Alignment:
Q  205 gtgtgctcttggggtacccacttttgtgaacgg 237  Q
    |||||| ||||||||||||||||||||||||||    
T  34142749 gtgtgcccttggggtacccacttttgtgaacgg 34142717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 34155365 - 34155333
Alignment:
Q  205 gtgtgctcttggggtacccacttttgtgaacgg 237  Q
    |||||| ||||||||||||||||||||||||||    
T  34155365 gtgtgcccttggggtacccacttttgtgaacgg 34155333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 34376432 - 34376400
Alignment:
Q  205 gtgtgctcttggggtacccacttttgtgaacgg 237  Q
    |||||| ||||||||||||||||||||||||||    
T  34376432 gtgtgcccttggggtacccacttttgtgaacgg 34376400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 172; Significance: 4e-92; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 63 - 359
Target Start/End: Complemental strand, 19430817 - 19430517
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatca 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||| ||    
T  19430817 actagttaaatctagtgagaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtgagccacacca 19430718  T
Q  163 actagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatata 262  Q
    |||||||||| ||||||||||||||||||||||||||||||  ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19430717 actagaaagtgtttatataagggtagagtgacctccaaggg--tgtgcccttgggatacccacttttgtgaacgggtgaacgcttacaaaaacatatata 19430620  T
Q  263 tcgcgcgcgagaccgaaccg------aaccgaacagggccggtcgtggatcgtgggtggaaaataaaatatannnnnnngtcacttgaaaatgataaatt 356  Q
    || |||||| |||    |||       ||||||| ||||||| | ||| ||||||||| |||||||||||||       |||||||||||||||||||||    
T  19430619 tcacgcgcgcgacgacgccgccgtctgaccgaaccgggccgggcttgggtcgtgggtgaaaaataaaatatatttttttgtcacttgaaaatgataaatt 19430520  T
Q  357 aat 359  Q
    |||    
T  19430519 aat 19430517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 63 - 359
Target Start/End: Complemental strand, 19566966 - 19566666
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatca 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||| ||    
T  19566966 actagttaaatctagtgagaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtgagccacacca 19566867  T
Q  163 actagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatata 262  Q
    |||||||||| ||||||||||||||||||||||||||||||  ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19566866 actagaaagtgtttatataagggtagagtgacctccaaggg--tgtgcccttgggatacccacttttgtgaacgggtgaacgcttacaaaaacatatata 19566769  T
Q  263 tcgcgcgcgagaccgaaccg------aaccgaacagggccggtcgtggatcgtgggtggaaaataaaatatannnnnnngtcacttgaaaatgataaatt 356  Q
    || |||||| |||    |||       ||||||| ||||||| | ||| ||||||||| |||||||||||||       |||||||||||||||||||||    
T  19566768 tcacgcgcgcgacgacgccgccgtctgaccgaaccgggccgggcttgggtcgtgggtgaaaaataaaatatatttttttgtcacttgaaaatgataaatt 19566669  T
Q  357 aat 359  Q
    |||    
T  19566668 aat 19566666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 336 - 588
Target Start/End: Complemental strand, 31031087 - 31030844
Alignment:
Q  336 gtcacttgaaaatgataaattaattatttaattaatctaatcattatccaaaaacgctacgcgtaacaagtaaggttgttacgatccgacccgatccaaa 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| || |||||||||||||||          |||    
T  31031087 gtcacttgaaaatgataaattaattatttaattaatctaatcattatccgaaagcgctacgcgtaacacgtgaggttgttacgatcc----------aaa 31030998  T
Q  436 acgagtatccagaagcttccggatatatccaattaagaaacaaaa-cgcatttgcttaaggattaagcagacttaatccctaagaaactcgttttttgtt 534  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31030997 acgagtatccagaagtttccggatatatcaaattaagaaacaaaaacgcgtttgcttaaggattaagcagacttaatccctaagtaactcgttttttgtt 31030898  T
Q  535 acgaactcctcctataaaaggagagctcgcccccctcattcttcacatcgaatt 588  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  31030897 acgaactcctcctataaaaggagagctcgcccccctcattctttacaccgaatt 31030844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 63 - 399
Target Start/End: Complemental strand, 19436259 - 19435909
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatca 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||| ||    
T  19436259 actagttaaatctagtgagaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtgagccacacca 19436160  T
Q  163 actagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatata 262  Q
    |||||||||| |||||||||||||| |||||||||||||||||||  | |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19436159 actagaaagtgtttatataagggtaaagtgacctccaagggtgtg--cccttggggtacccacttttgtgaactggtgaacgcttacaaaaacatatata 19436062  T
Q  263 t--cgcgcgcga----------gaccga---accgaaccgaacagggcc-ggtcgtggatcgtgggtggaaaataaaatatannnnnnngtcacttgaaa 346  Q
    |  |||||||||          | |||    ||||||||   | ||||  || | ||| ||||||||| |||||||||||||       |||||||||||    
T  19436061 tcacgcgcgcgacgacgccgccgtccgtccgaccgaaccaggccgggcttgggcttgggtcgtgggtgaaaaataaaatatatttttttgtcacttgaaa 19435962  T
Q  347 atgataaattaattatttaattaatctaatcattatccaaaaacgctacgcgt 399  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  19435961 atgataaattaattatttaattaatctaatcattatccgaaagcgctacgcgt 19435909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 63 - 399
Target Start/End: Complemental strand, 19572408 - 19572058
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatca 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||| ||    
T  19572408 actagttaaatctagtgagaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtgagccacacca 19572309  T
Q  163 actagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatata 262  Q
    |||||||||| |||||||||||||| |||||||||||||||||||  | |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19572308 actagaaagtgtttatataagggtaaagtgacctccaagggtgtg--cccttggggtacccacttttgtgaactggtgaacgcttacaaaaacatatata 19572211  T
Q  263 t--cgcgcgcga----------gaccga---accgaaccgaacagggcc-ggtcgtggatcgtgggtggaaaataaaatatannnnnnngtcacttgaaa 346  Q
    |  |||||||||          | |||    ||||||||   | ||||  || | ||| ||||||||| |||||||||||||       |||||||||||    
T  19572210 tcacgcgcgcgacgacgccgccgtccgtccgaccgaaccaggccgggcttgggcttgggtcgtgggtgaaaaataaaatatatttttttgtcacttgaaa 19572111  T
Q  347 atgataaattaattatttaattaatctaatcattatccaaaaacgctacgcgt 399  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  19572110 atgataaattaattatttaattaatctaatcattatccgaaagcgctacgcgt 19572058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 397 - 602
Target Start/End: Complemental strand, 19430516 - 19430313
Alignment:
Q  397 cgtaacaagtaaggttgttacgatccgacccgatccaaaacgagtatccagaagcttccggatatatccaattaagaaacaaaacgcatttgcttaagga 496  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||| | | ||||||| ||||||||||||    
T  19430516 cgtaacaagtaaggttgttact-tccgacccgatccaaaacgagtatccagaagtttccggatatatccaattaaaaca-aaaacgcgtttgcttaagga 19430419  T
Q  497 ttaagcagacttaatccctaagaaactcgttttttgttacgaactcctcctataaaaggagagctcgcccccctcattcttcacatcgaatttcgcagtt 596  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19430418 ttaagcagacttaatccctaagtaactcgttttttgttatgaactcctcctataaaaggagagctcgcccccctcattctttacatcgaatttcgcagtt 19430319  T
Q  597 gatgat 602  Q
    ||||||    
T  19430318 gatgat 19430313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 397 - 602
Target Start/End: Complemental strand, 19566665 - 19566462
Alignment:
Q  397 cgtaacaagtaaggttgttacgatccgacccgatccaaaacgagtatccagaagcttccggatatatccaattaagaaacaaaacgcatttgcttaagga 496  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||| | | ||||||| ||||||||||||    
T  19566665 cgtaacaagtaaggttgttact-tccgacccgatccaaaacgagtatccagaagtttccggatatatccaattaaaaca-aaaacgcgtttgcttaagga 19566568  T
Q  497 ttaagcagacttaatccctaagaaactcgttttttgttacgaactcctcctataaaaggagagctcgcccccctcattcttcacatcgaatttcgcagtt 596  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19566567 ttaagcagacttaatccctaagtaactcgttttttgttatgaactcctcctataaaaggagagctcgcccccctcattctttacatcgaatttcgcagtt 19566468  T
Q  597 gatgat 602  Q
    ||||||    
T  19566467 gatgat 19566462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 65 - 376
Target Start/End: Original strand, 33616075 - 33616385
Alignment:
Q  65 tagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatcaac 164  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| | || |||||||||||  ||||||||||||||||| ||||    
T  33616075 tagttaaatctagtgagaaaattggataagaaaaatacaatataagaactagtgtgagtatgtggcttaaaaatgtctcacattggtgagccacaccaac 33616174  T
Q  165 tagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatatatc 264  Q
    |||||||| |||||||||||||||||| ||||||||||  |||||| ||| |||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  33616175 tagaaagtgtttatataagggtagagtaacctccaagg--gtgtgccctt-gggtacccacttttatgaacggatgaacgcttacaaaaacatatatatc 33616271  T
Q  265 gcgcgcgagaccgaaccg---aaccgaacagggccggtcgtggatcgtgggtggaaaataaaatatannnnnnngtcacttgaaaatgataaattaatta 361  Q
     | |||| |||    |||    || |  | ||||||| | ||| | ||||||||||||||| |||||       ||||||||||||||||||||||||||    
T  33616272 acacgcgcgacgccgccgtccgactgggccgggccgggcttgggtggtgggtggaaaataatatata-ttttttgtcacttgaaaatgataaattaatta 33616370  T
Q  362 tttaattaatctaat 376  Q
    |||||||||||||||    
T  33616371 tttaattaatctaat 33616385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 63 - 264
Target Start/End: Complemental strand, 31031340 - 31031145
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatca 162  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||  ||||||||||||||||| ||    
T  31031340 actagttaaatctaatgagaaaattggataagaaaaacacattataagaactagtgtgagtgtgtgacttaaaaatgtctcacattggtgagccacacca 31031241  T
Q  163 actagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatata 262  Q
    |||||||||||  |||||||||||||||||||||||||||   ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  31031240 actagaaagta--tatataagggtagagtgacctccaagg--atgtgcccttggggtacccacttttgtgaac--gtgaacgcttacaaaaacatatata 31031147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 63 - 264
Target Start/End: Complemental strand, 13584959 - 13584755
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaa-----cacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagcca 157  Q
    |||||||||||||||||||||||||||||||||||||     |||||||||| || ||||||||| || ||| |||||||||| ||||||||||||||||    
T  13584959 actagttaaatctagtgagaaaattggataagaaaaaaaaaacacaatataagaattagtgtgagcgtgtgatttaaaaatgtcccacattggtgagcca 13584860  T
Q  158 catcaactagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacat 257  Q
    || |||||||||||| |||||||| |||||||||||| ||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13584859 caccaactagaaagtgtttatatacgggtagagtgacatccaaggg--tgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaaaaacat 13584762  T
Q  258 atatatc 264  Q
    |||||||    
T  13584761 atatatc 13584755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 477 - 602
Target Start/End: Original strand, 33616395 - 33616520
Alignment:
Q  477 aaaacgcatttgcttaaggattaagcagacttaatccctaagaaactcgttttttgttacgaactcctcctataaaaggagagctcgcccccctcattct 576  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  33616395 aaaacgcgtttgcttaaggattaagcagacttaatccctaagtaactcgttttttgttatgaactcctcctataaaaggagagctcgcccccctcattct 33616494  T
Q  577 tcacatcgaatttcgcagttgatgat 602  Q
    | ||| |||||| | |||| ||||||    
T  33616495 ttacaccgaattccacagtcgatgat 33616520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 420 - 471
Target Start/End: Complemental strand, 19435909 - 19435858
Alignment:
Q  420 tccgacccgatccaaaacgagtatccagaagcttccggatatatccaattaa 471  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19435909 tccgacccgatccaaaacgagtatccagaagtttccggatatatccaattaa 19435858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 420 - 471
Target Start/End: Complemental strand, 19572058 - 19572007
Alignment:
Q  420 tccgacccgatccaaaacgagtatccagaagcttccggatatatccaattaa 471  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19572058 tccgacccgatccaaaacgagtatccagaagtttccggatatatccaattaa 19572007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 524 - 598
Target Start/End: Complemental strand, 33848387 - 33848312
Alignment:
Q  524 cgttttttgttacgaa-ctcctcctataaaaggagagctcgcccccctcattcttcacatcgaatttcgcagttga 598  Q
    |||||||||||||||| |||  ||||||||||||||||||||| | || |||||| ||| |||| ||| |||||||    
T  33848387 cgttttttgttacgaaactctccctataaaaggagagctcgcctcacttattctttacaccgaaattcacagttga 33848312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 164; Significance: 2e-87; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 336 - 602
Target Start/End: Original strand, 10120108 - 10120375
Alignment:
Q  336 gtcacttgaaaatgataaattaattatttaattaatctaatcattatccaaaaacgctacgcgtaacaagtaaggttgttacgatccgacccgatccaaa 435  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||| ||| ||||| ||||||||| |||  |||||||||||||||||||||||||    
T  10120108 gtcacttgaaaatgttatattaattatttaattaatctaatcattatccgaaagcgctatgcgtaacaaataaaattgttacgatccgacccgatccaaa 10120207  T
Q  436 a-cgagtatccagaagcttccggatatatccaattaagaaacaaaacgcatttgcttaaggattaagcagacttaatccctaagaaactcgttttttgtt 534  Q
    | |||||||||||||| |  ||||||||||||||||||||||||||||| ||| ||| |||||||||| ||||||||||| |||   |||||||||||||    
T  10120208 aacgagtatccagaagttctcggatatatccaattaagaaacaaaacgcgtttacttgaggattaagccgacttaatccccaagtctctcgttttttgtt 10120307  T
Q  535 acgaactcctcctataaaaggagagctcgcccccctcattcttcacatcgaatttcgcagttgatgat 602  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||| |||||||| |||| ||||||    
T  10120308 acgaactcttcctataaaaggagagctcgcccccctcattctacacaccgaatttcacagtcgatgat 10120375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 63 - 263
Target Start/End: Original strand, 10119815 - 10120013
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatca 162  Q
    ||||||| ||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| |||||||||||||||||| ||    
T  10119815 actagttgaatctcgtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtgagccacacca 10119914  T
Q  163 actagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatata 262  Q
    |||||||||| |||||||||||||||||||||||||||||  |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10119915 actagaaagtgtttatataagggtagagtgacctccaagg--gtgtacccttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatata 10120012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 363 - 602
Target Start/End: Complemental strand, 24490573 - 24490333
Alignment:
Q  363 ttaattaatctaatcattatccaaaaacgctacgcgtaacaagtaaggttgttacgatccgacccgatccaaaacgagtatccagaagcttccggatata 462  Q
    ||||||||| |||||||||||  ||| |||||| |||||||| |||  | |||||||||||||||||||||||||| ||||||||||| |||| ||||||    
T  24490573 ttaattaatttaatcattatcggaaagcgctacacgtaacaaataaaatcgttacgatccgacccgatccaaaacgtgtatccagaagtttccagatata 24490474  T
Q  463 tccaattaagaaa-caaaacgcatttgcttaaggattaagcagacttaatccctaagaaactcgttttttgttacgaactcctcctataaaaggagagct 561  Q
    |||||||||||||  ||||||| ||| ||| ||||||||||  |||||||||| |||  ||||||||||||||||||||||  |||||||||||||||||    
T  24490473 tccaattaagaaatgaaaacgcgtttacttgaggattaagcttacttaatccccaagtcactcgttttttgttacgaactctccctataaaaggagagct 24490374  T
Q  562 cgcccccctcattcttcacatcgaatttcgcagttgatgat 602  Q
     || || ||||||||||||| |||| ||| |||||||||||    
T  24490373 tgctccactcattcttcacaccgaaattcacagttgatgat 24490333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 63 - 264
Target Start/End: Complemental strand, 24490873 - 24490679
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatca 162  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||  ||||  |||||||||||| ||| ||||| |||||||| ||    
T  24490873 actagttaaatctagtgagaaaattggata-gaaaaacacaatgtaagaactagtgtg--tgta--acttaaaaatgtcccatattggagagccacacca 24490779  T
Q  163 actagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatata 262  Q
    ||||| |||| ||||||||||||||||||||||||||||||  ||||| |||| |||||| || |||| |||||||||| | |||| |||||||||||||    
T  24490778 actagcaagtgtttatataagggtagagtgacctccaaggg--tgtgcccttgaggtacctacatttgcgaacgggtgagcacttagaaaaacatatata 24490681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 63 - 245
Target Start/End: Complemental strand, 653773 - 653592
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaa-cacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatc 161  Q
    ||||||| ||||||||||||||||||||| |||| || ||| | |||| ||||||||||  | | |||||||||||||| |||||||||| || |||  |    
T  653773 actagtttaatctagtgagaaaattggatgagaataatcactacataagaactagtgtggttatgtgacttaaaaatgtcccacattggttagtcacccc 653674  T
Q  162 aactagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgc 245  Q
    |||||| |||| |||||||||||| |||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||    
T  653673 aactagtaagtgtttatataagggaagagtgacctccaaggg--tgtgcccttggggtacccacttttgtgaacgggtgaacgc 653592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 461 - 602
Target Start/End: Original strand, 10120461 - 10120603
Alignment:
Q  461 tatccaattaagaaacaaaacgcatttgcttaaggattaagcagacttaatccctaagaaactcgtttt-ttgttacgaactcctcctataaaaggagag 559  Q
    ||||||||||||||||||||||| ||| ||| |||||||||| ||||||||||| |||   |||||||| ||||||||||||| ||||||||||||||||    
T  10120461 tatccaattaagaaacaaaacgcgtttacttgaggattaagccgacttaatccccaagtctctcgtttttttgttacgaactcttcctataaaaggagag 10120560  T
Q  560 ctcgcccccctcattcttcacatcgaatttcgcagttgatgat 602  Q
    ||||||||||||||||| |||| ||||||||||||| ||||||    
T  10120561 ctcgcccccctcattctacacaccgaatttcgcagtcgatgat 10120603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 438 - 602
Target Start/End: Original strand, 30564042 - 30564207
Alignment:
Q  438 gagtatccagaagcttccggatatatccaattaagaaaca-aaacgcatttgcttaaggattaagcagacttaatccctaagaaactcgttttttgttac 536  Q
    ||||||| ||||  |||| ||||||||||| ||||||||| ||||||  |||||||| ||||||||||||||||||| ||||  ||||||||||||||||    
T  30564042 gagtatctagaattttccagatatatccaactaagaaacataaacgcggttgcttaaagattaagcagacttaatccttaagtcactcgttttttgttac 30564141  T
Q  537 gaactcctcctataaaaggagagctcgcccccctcattcttcacatcgaatttcgcagttgatgat 602  Q
    ||||||  ||||||||||||||||||| ||| ||||||||| ||| |||| ||| |||||||||||    
T  30564142 gaactctccctataaaaggagagctcgtcccactcattctttacaccgaaattcacagttgatgat 30564207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 488 - 602
Target Start/End: Original strand, 10318455 - 10318569
Alignment:
Q  488 gcttaaggattaagcagacttaatccctaagaaactcgttttttgttacgaactcctcctataaaaggagagctcgcccccctcattcttcacatcgaat 587  Q
    ||||||||||||||| |||||||||| ||||  |||||||||||||||| |||||  |||||||||||||||||| |||  ||||||||| ||| ||||     
T  10318455 gcttaaggattaagctgacttaatccttaagtcactcgttttttgttacaaactctgcctataaaaggagagctcccccaactcattctttacaccgaaa 10318554  T
Q  588 ttcgcagttgatgat 602  Q
    ||| ||||| |||||    
T  10318555 ttcacagttcatgat 10318569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 522 - 598
Target Start/End: Complemental strand, 653422 - 653346
Alignment:
Q  522 ctcgttttttgttacgaactcctcctataaaaggagagctcgcccccctcattcttcacatcgaatttcgcagttga 598  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||   ||||||||||| | |||||||    
T  653422 ctcgtttttagttacgaactcctcctataaaaggagagctcgctcccctcatttaacacatcgaattacacagttga 653346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 121 - 229
Target Start/End: Original strand, 10318245 - 10318350
Alignment:
Q  121 agtgtatgacttaaaaatgttccacattggtgagccacatcaactagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggta 220  Q
    ||||| ||| ||||||||||  ||||||| ||||||||| ||||||  ||||  |||||||||||| |  |||||||||||||||||    |||||||||    
T  10318245 agtgtgtgatttaaaaatgtctcacattgatgagccacaccaactaacaagtgattatataagggtgggatgacctccaagggtgtg---ccttggggta 10318341  T
Q  221 cccactttt 229  Q
    |||||||||    
T  10318342 cccactttt 10318350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 485 - 561
Target Start/End: Complemental strand, 15499054 - 15498977
Alignment:
Q  485 tttgcttaaggattaagcagacttaatccctaagaaactc-gttttttgttacgaactcctcctataaaaggagagct 561  Q
    |||||||||||||||| | |||||||||| ||||  |||| ||||||| ||||||||||  |||||||||||||||||    
T  15499054 tttgcttaaggattaaactgacttaatccttaagtcactcagttttttattacgaactctccctataaaaggagagct 15498977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 336 - 383
Target Start/End: Complemental strand, 653558 - 653512
Alignment:
Q  336 gtcacttgaaaatgataaattaattatttaattaatctaatcattatc 383  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||    
T  653558 gtcacttgaaaatgataaattaatta-ttaattaatttaatcattatc 653512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 473 - 561
Target Start/End: Complemental strand, 15451607 - 15451517
Alignment:
Q  473 aaacaaaacgcattt-gcttaaggattaagcagacttaatccctaagaaactc-gttttttgttacgaactcctcctataaaaggagagct 561  Q
    ||||||||||| ||| ||||||||||||| | |||||||||| ||||  |||| ||||||| |||| |||||  |||||||||||||||||    
T  15451607 aaacaaaacgcgttttgcttaaggattaaactgacttaatccttaagtcactcagttttttattacaaactctccctataaaaggagagct 15451517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 9763442 - 9763484
Alignment:
Q  193 acctccaagggtgtgtgctcttggggtacccacttttgtgaacgg 237  Q
    |||||||||||||||  | ||||||||||||||||||||||||||    
T  9763442 acctccaagggtgtg--cccttggggtacccacttttgtgaacgg 9763484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 13711338 - 13711306
Alignment:
Q  205 gtgtgctcttggggtacccacttttgtgaacgg 237  Q
    |||||| ||||||||||||||||||||||||||    
T  13711338 gtgtgcccttggggtacccacttttgtgaacgg 13711306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 15451819 - 15451783
Alignment:
Q  205 gtgtgctcttggggtacccacttttgtgaacgggtga 241  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  15451819 gtgtgcccttggggtacccacttttgcgaacgggtga 15451783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 565
Target Start/End: Complemental strand, 17359915 - 17359835
Alignment:
Q  485 tttgcttaaggattaagcagacttaatccctaagaaactcgttttttgttacgaactcctcctataaaaggagagctcgcc 565  Q
    |||| |||||||||||||  ||||||||| ||||  ||||   |||||||||||||||   |||||||||||||| |||||    
T  17359915 tttgattaaggattaagcgaacttaatccttaagtcactccggttttgttacgaactctcactataaaaggagagttcgcc 17359835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 41393828 - 41393796
Alignment:
Q  205 gtgtgctcttggggtacccacttttgtgaacgg 237  Q
    |||||| ||||||||||||||||||||||||||    
T  41393828 gtgtgcccttggggtacccacttttgtgaacgg 41393796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 147; Significance: 3e-77; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 63 - 264
Target Start/End: Complemental strand, 42915347 - 42915148
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatca 162  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| |||||||||||||||||| ||    
T  42915347 actagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtgagccacacca 42915248  T
Q  163 actagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatata 262  Q
    |||||||||| ||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||| |||||  |||||||    
T  42915247 actagaaagtgtttatataagggtagagtgacctccaaggg--tgtgcccttggggtacccacttttgtgaacgggtgaacgcttgcaaaagtatatata 42915150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 63 - 264
Target Start/End: Complemental strand, 5089863 - 5089663
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaa-tgttccacattggtgagccacatc 161  Q
    ||||||| ||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||   |||||||||| ||| |||||||||||||||||| |    
T  5089863 actagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgcgggacttaaaaaatgtcccacattggtgagccacacc 5089764  T
Q  162 aactagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatat 261  Q
    || |||||||| ||||||||||| |||||||||||| ||||  |||||| ||||  ||||||||||||||||||||||||||||||||||||| ||||||    
T  5089763 aattagaaagtgtttatataaggatagagtgacctctaagg--gtgtgcccttgatgtacccacttttgtgaacgggtgaacgcttacaaaaatatatat 5089666  T
Q  262 atc 264  Q
    |||    
T  5089665 atc 5089663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 527 - 602
Target Start/End: Complemental strand, 5089654 - 5089579
Alignment:
Q  527 tttttgttacgaactcctcctataaaaggagagctcgcccccctcattcttcacatcgaatttcgcagttgatgat 602  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||| | ||||||||||    
T  5089654 ttttcgttacgaactcttcctataaaaggagagctcgcccccctcattctttacaccgaattttgaagttgatgat 5089579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 452 - 532
Target Start/End: Complemental strand, 42915079 - 42914999
Alignment:
Q  452 ttccggatatatccaattaagaaacaaaacgcatttgcttaaggattaagcagacttaatccctaagaaactcgttttttg 532  Q
    |||||||||||||||||||||||||||||||| ||| ||| |||||||||| ||||||||||| |||   |||||||||||    
T  42915079 ttccggatatatccaattaagaaacaaaacgcgtttacttgaggattaagccgacttaatccccaagtctctcgttttttg 42914999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 39959846 - 39959759
Alignment:
Q  174 tttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatatat 263  Q
    ||||||||||||| | ||||||||||||||||||| ||  |||||||||| |||||| ||||||||||||||||| ||| | ||||||||    
T  39959846 tttatataagggtggggtgacctccaagggtgtgtcct--tggggtacccgcttttgcgaacgggtgaacgcttagaaatatatatatat 39959759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 43111538 - 43111619
Alignment:
Q  127 tgacttaaaaatgttccacattggtgagccacatcaactagaaagtatttatataagggtagagtgacctccaagggtgtgt 208  Q
    |||||||||||||| ||| ||| |||||||||| ||||||| |||| ||||||||||||| | ||||||| |||||||||||    
T  43111538 tgacttaaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataagggtggggtgacctacaagggtgtgt 43111619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 241
Target Start/End: Complemental strand, 44683836 - 44683721
Alignment:
Q  124 gtatgacttaaaaatgttccacattggtgagccacatcaactagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtaccc 223  Q
    |||||||||||||||||| |||||||| || ||| |  |  ||| |||| |||||||||| | || ||||||| ||||| ||||||   ||||||||||     
T  44683836 gtatgacttaaaaatgtttcacattggagaaccataatacttagtaagtgtttatataagtggagggtgacctacaaggatgtgtg--tttggggtacca 44683739  T
Q  224 acttttgtgaacgggtga 241  Q
    ||||||| ||||||||||    
T  44683738 acttttgcgaacgggtga 44683721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 14328959 - 14328999
Alignment:
Q  17 aaaattgactaaatgagtgccactcattgaatggtgttgga 57  Q
    |||||||||||||||| ||||||||||||| |||| |||||    
T  14328959 aaaattgactaaatgaatgccactcattgagtggtattgga 14328999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 135; Significance: 5e-70; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 63 - 236
Target Start/End: Original strand, 2430 - 2601
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatca 162  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||| ||||||||| ||    
T  2430 actagttgaatctagtgagaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacattgttgagccacacca 2529  T
Q  163 actagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacg 236  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||    
T  2530 actagaaagtatttatataagggtagagtgacctccaagg--gtgtgcccttggggtacccacttttgtgaacg 2601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 63 - 236
Target Start/End: Original strand, 10390 - 10561
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatca 162  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||| ||||||||| ||    
T  10390 actagttgaatctagtgagaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacattgttgagccacacca 10489  T
Q  163 actagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacg 236  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||    
T  10490 actagaaagtatttatataagggtagagtgacctccaagg--gtgtgcccttggggtacccacttttgtgaacg 10561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 135; Significance: 5e-70; HSPs: 4)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 63 - 271
Target Start/End: Complemental strand, 2411 - 2204
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaa-tgttccacattggtgagccacatc 161  Q
    ||||||| || ||||||||||||||||||||||||||||||||  || ||||||||||||||| ||||||||||| ||| |||||||||||||||||| |    
T  2411 actagttgaacctagtgagaaaattggataagaaaaacacaatgaaagaactagtgtgagtgtgtgacttaaaaaatgtcccacattggtgagccacacc 2312  T
Q  162 aactagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatat 261  Q
    ||||||||||| ||||||||||||||  ||||||||||||||||||  | |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2311 aactagaaagtgtttatataagggtattgtgacctccaagggtgtg--cccttggggtacccacttttgtgaacggatgaacgcttacaaaaacatatat 2214  T
Q  262 atcgcgcgcg 271  Q
    ||| ||||||    
T  2213 atcacgcgcg 2204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 63 - 228
Target Start/End: Complemental strand, 7665 - 7501
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaa-tgttccacattggtgagccacatc 161  Q
    ||||||| || ||||||||||||||||||||||||||||||||  || ||||||||||||||| ||||||||||| ||| |||||||||||||||||| |    
T  7665 actagttgaacctagtgagaaaattggataagaaaaacacaatgaaagaactagtgtgagtgtgtgacttaaaaaatgtcccacattggtgagccacacc 7566  T
Q  162 aactagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttt 228  Q
    ||||||||||| ||||||||||||||| ||||||||||||||  ||||| |||||||||||||||||    
T  7565 aactagaaagtgtttatataagggtagtgtgacctccaaggg--tgtgcccttggggtacccacttt 7501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 336 - 602
Target Start/End: Complemental strand, 2122 - 1867
Alignment:
Q  336 gtcacttgaaaatgataaattaattatttaattaatctaatcattatccaaaaacgctacgcgtaacaagtaaggttgttacgatccgacccgatccaaa 435  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||| | |  ||| ||||||| || ||||||||||    
T  2122 gtcacttgaaaatgttaaattaattatttaattaatctaatcattatccgaaagcgctacgcgtaacaaatgaaattgatacgatctgatccgatccaaa 2023  T
Q  436 a-cgagtatccagaagcttccggatatatccaattaagaaacaaaacgcatttgcttaaggattaagcagacttaatccctaagaaactcgttttttgtt 534  Q
    | |||||            ||||||||||||||||||| ||||||| |||||| ||| |||||||||| ||||||||||| |||   ||||||||  |||    
T  2022 aacgagt------------ccggatatatccaattaaggaacaaaatgcatttacttgaggattaagctgacttaatccccaagtgtctcgttttcggtt 1935  T
Q  535 acgaactcctcctataaaaggagagctcgcccccctcattcttcacatcgaatttcgcagttgatgat 602  Q
    |||||||| ||||||||||||||||||||| |||||||||||| | | |||||| | |||| ||||||    
T  1934 acgaactcatcctataaaaggagagctcgcgcccctcattctttaaaccgaattccacagtcgatgat 1867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 453 - 602
Target Start/End: Complemental strand, 7497 - 7348
Alignment:
Q  453 tccggatatatccaattaagaaacaaaacgcatttgcttaaggattaagcagacttaatccctaagaaactcgttttttgttacgaactcctcctataaa 552  Q
    |||||||||||||||||||| |||||||||| ||| ||| |||||||||| ||||||||||| |||   ||||||||  ||||||||||| |||||||||    
T  7497 tccggatatatccaattaaggaacaaaacgcgtttacttgaggattaagccgacttaatccccaagtctctcgttttcggttacgaactcatcctataaa 7398  T
Q  553 aggagagctcgcccccctcattcttcacatcgaatttcgcagttgatgat 602  Q
    ||||||||||||||||||||||||| ||| |||||| | |||| ||||||    
T  7397 aggagagctcgcccccctcattctttacaccgaattccacagtcgatgat 7348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 1e-55; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 63 - 271
Target Start/End: Original strand, 13581990 - 13582197
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaa-cacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatc 161  Q
    ||||||| ||||||||||||||||||||| |||| || ||| | |||| ||||||||||  | | |||||||||||||| |||||||||| || |||  |    
T  13581990 actagttcaatctagtgagaaaattggatgagaataatcactacataagaactagtgtggttatgtgacttaaaaatgtcccacattggttagtcacccc 13582089  T
Q  162 aactagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatat 261  Q
    |||||| |||| |||||||||||| |||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13582090 aactagtaagtgtttatataagggaagagtgacctccaagggtgtg--cccttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatat 13582187  T
Q  262 atcgcgcgcg 271  Q
    ||| ||||||    
T  13582188 atcacgcgcg 13582197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 63 - 272
Target Start/End: Complemental strand, 14374908 - 14374701
Alignment:
Q  63 actagttaaatctagtgagaaaattggataagaaaaacacaata-taaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatc 161  Q
    ||||||| |||||||||||||  |||||| |||| ||  || || ||| ||||||||||  ||| |||||||||||||| |||||||||| || |||  |    
T  14374908 actagttcaatctagtgagaagtttggatgagaataag-cactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattggttagtcacccc 14374810  T
Q  162 aactagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatat 261  Q
    ||||||||||| |||||||||||| |||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14374809 aactagaaagtgtttatataagggaagagtgacctccaaggg--tgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatat 14374712  T
Q  262 atcgcgcgcga 272  Q
    ||  |||||||    
T  14374711 atatcgcgcga 14374701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 111 - 271
Target Start/End: Complemental strand, 7805809 - 7805651
Alignment:
Q  111 aactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatcaactagaaagtatttatataagggtagagtgacctccaagggtgtgtgc 210  Q
    ||||||||||  ||| |||||||||||||| |||||||||| || |||  ||||||| |||| |||||||||||| |||||||||||||||||  |||||    
T  7805809 aactagtgtggttgtgtgacttaaaaatgtcccacattggttagtcaccccaactagtaagtgtttatataagggaagagtgacctccaaggg--tgtgc 7805712  T
Q  211 tcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatatatcgcgcgcg 271  Q
     ||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||    
T  7805711 ccttggggtacccacttttgtgaacgggtgaacgcttacaaaaatatgtatatcacgcgcg 7805651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 522 - 598
Target Start/End: Original strand, 13582406 - 13582482
Alignment:
Q  522 ctcgttttttgttacgaactcctcctataaaaggagagctcgcccccctcattcttcacatcgaatttcgcagttga 598  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||   ||||||||||||| |||||||    
T  13582406 ctcgttttttgttatgaactcctcctataaaaggagagctcgctcccctcatttaacacatcgaatttcacagttga 13582482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 506 - 588
Target Start/End: Complemental strand, 7805464 - 7805383
Alignment:
Q  506 cttaatccctaagaaactcgttttttgttacgaactcctcctataaaaggagagctcgcccccctcattcttcacatcgaatt 588  Q
    ||||||||| ||| | ||||||||| ||||||||||||||||||||||||||||||||| |||||||||   |||||||||||    
T  7805464 cttaatccccaagtatctcgttttt-gttacgaactcctcctataaaaggagagctcgctcccctcatttaacacatcgaatt 7805383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 336 - 383
Target Start/End: Complemental strand, 7805575 - 7805528
Alignment:
Q  336 gtcacttgaaaatgataaattaattatttaattaatctaatcattatc 383  Q
    |||||||||||||||||||||||||||||| ||||| || ||||||||    
T  7805575 gtcacttgaaaatgataaattaattatttatttaatttagtcattatc 7805528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 124 - 253
Target Start/End: Original strand, 9361773 - 9361898
Alignment:
Q  124 gtatgacttaaaaatgttccacattggtgagccacatcaactagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtaccc 223  Q
    ||||||||||||||||| ||||||||| ||| || |  | |||| ||||||||||||||| | || ||||  |||||||  |||||| |||| |||| ||    
T  9361773 gtatgacttaaaaatgtgccacattggagagacatactacctagtaagtatttatataagtggagggtga--tccaagg--gtgtgcccttgtggtatcc 9361868  T
Q  224 acttttgtgaacgggtgaacgcttacaaaa 253  Q
    |||||||  ||||| |||||||||| ||||    
T  9361869 acttttgcaaacggatgaacgcttagaaaa 9361898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 537 - 588
Target Start/End: Complemental strand, 14374498 - 14374447
Alignment:
Q  537 gaactcctcctataaaaggagagctcgcccccctcattcttcacatcgaatt 588  Q
    |||||||||||||||||||||||||||| |||||||||   |||||||||||    
T  14374498 gaactcctcctataaaaggagagctcgctcccctcatttaacacatcgaatt 14374447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 363
Target Start/End: Original strand, 13582233 - 13582298
Alignment:
Q  297 ggtcgtggatcgtgggtggaaaataaaatatannnnnnngtcacttgaaaatgataaattaattatt 363  Q
    |||||||| |||||| |||||||| |||||||       ||||||||||||||||||||||||||||    
T  13582233 ggtcgtgggtcgtgg-tggaaaatgaaatatatttttttgtcacttgaaaatgataaattaattatt 13582298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 24776238 - 24776270
Alignment:
Q  205 gtgtgctcttggggtacccacttttgtgaacgg 237  Q
    |||||| ||||||||||||||||||||||||||    
T  24776238 gtgtgcccttggggtacccacttttgtgaacgg 24776270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 528 - 600
Target Start/End: Complemental strand, 31987101 - 31987029
Alignment:
Q  528 ttttgttacgaactcctcctataaaaggagagctcgcccccctcattcttcacatcgaatttcgcagttgatg 600  Q
    |||||||||||||||   |||||||||||||||||||| | || |||||| ||  |||| ||| |||||||||    
T  31987101 ttttgttacgaactctcactataaaaggagagctcgcctcacttattctttacgccgaagttcacagttgatg 31987029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 36254485 - 36254453
Alignment:
Q  205 gtgtgctcttggggtacccacttttgtgaacgg 237  Q
    |||||| ||||||||||||||||||||||||||    
T  36254485 gtgtgcccttggggtacccacttttgtgaacgg 36254453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 83; Significance: 5e-39; HSPs: 2)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 62 - 264
Target Start/End: Original strand, 33313 - 33507
Alignment:
Q  62 tactagttaaatctagtgagaaaattggataagaaaaacacaatataaaaactagtgtgagtgtatgacttaaaaatgttccacattggtgagccacatc 161  Q
    |||||||||| |||||||| ||||||||||| |||||||||||| ||| |||||||||| |||    |||||||||||| |||||||| ||||||||| |    
T  33313 tactagttaattctagtga-aaaattggata-gaaaaacacaatgtaagaactagtgtgtgtg----acttaaaaatgtcccacattgatgagccacacc 33406  T
Q  162 aactagaaagtatttatataagggtagagtgacctccaagggtgtgtgctcttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatat 261  Q
    |||||| |||| |||||||||| || | |||| ||||||||  ||||||  ||||| ||||||||||||||||||||||| |||||| ||||| ||||||    
T  33407 aactagcaagtgtttatataagagtggggtgagctccaagg--gtgtgccattgggatacccacttttgtgaacgggtgagcgcttagaaaaatatatat 33504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 488 - 602
Target Start/End: Original strand, 33645 - 33759
Alignment:
Q  488 gcttaaggattaagcagacttaatccctaagaaactcgttttttgttacgaactcctcctataaaaggagagctcgcccccctcattcttcacatcgaat 587  Q
    ||||||||||||||  |||||||||| ||||  ||||| |||||||||||||||   |||||||||||||||||| |||| ||||||||| |||  |||     
T  33645 gcttaaggattaagttgacttaatccttaagtcactcgatttttgttacgaactatgcctataaaaggagagctcaccccactcattcttaacactgaaa 33744  T
Q  588 ttcgcagttgatgat 602  Q
    ||| || ||||||||    
T  33745 ttcacatttgatgat 33759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 8713 - 8745
Alignment:
Q  205 gtgtgctcttggggtacccacttttgtgaacgg 237  Q
    |||||| ||||||||||||||||||||||||||    
T  8713 gtgtgcccttggggtacccacttttgtgaacgg 8745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 13165 - 13197
Alignment:
Q  205 gtgtgctcttggggtacccacttttgtgaacgg 237  Q
    |||||| ||||||||||||||||||||||||||    
T  13165 gtgtgcccttggggtacccacttttgtgaacgg 13197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 37623 - 37591
Alignment:
Q  205 gtgtgctcttggggtacccacttttgtgaacgg 237  Q
    |||||| ||||||||||||||||||||||||||    
T  37623 gtgtgcccttggggtacccacttttgtgaacgg 37591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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